Wall clock time and date at job start Tue Mar 31 2020 23:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46502 * 109.44885 * 181.25664 * 5 4 2 8 8 C 1.34777 * 119.99989 * 154.94231 * 7 5 4 9 9 O 1.21548 * 120.00166 * 359.97438 * 8 7 5 10 10 C 1.47874 * 119.99879 * 180.02562 * 8 7 5 11 11 N 1.34549 * 126.05029 * 0.02562 * 10 8 7 12 12 C 1.30867 * 107.26974 * 180.02562 * 11 10 8 13 13 N 1.34588 * 107.62799 * 0.02562 * 12 11 10 14 14 C 1.46502 * 125.75014 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46829 * 74.99937 * 14 13 12 16 16 C 1.52992 * 109.46879 * 194.99924 * 14 13 12 17 17 C 1.53001 * 109.46926 * 314.99929 * 14 13 12 18 18 N 1.28848 * 108.49870 * 359.73136 * 13 12 11 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00292 * 209.22921 * 22 21 20 24 24 C 1.38821 * 119.99775 * 29.22866 * 22 21 20 25 25 N 1.31613 * 119.99866 * 24.23336 * 24 22 21 26 26 Si 1.86800 * 119.99862 * 204.23488 * 24 22 21 27 27 H 1.48493 * 109.46799 * 179.97438 * 26 24 22 28 28 H 1.48503 * 109.46833 * 299.99850 * 26 24 22 29 29 H 1.48503 * 109.47246 * 59.99528 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 35 35 H 0.97002 * 120.00297 * 334.94176 * 7 5 4 36 36 H 1.08005 * 126.18613 * 180.02562 * 12 11 10 37 37 H 1.08997 * 109.47126 * 60.00363 * 15 14 13 38 38 H 1.08998 * 109.46693 * 180.02562 * 15 14 13 39 39 H 1.09007 * 109.46882 * 299.99669 * 15 14 13 40 40 H 1.08998 * 109.47599 * 60.00254 * 16 14 13 41 41 H 1.09007 * 109.46937 * 180.02562 * 16 14 13 42 42 H 1.08999 * 109.47069 * 299.99738 * 16 14 13 43 43 H 1.09002 * 109.47158 * 59.99755 * 17 14 13 44 44 H 1.08998 * 109.47032 * 180.02562 * 17 14 13 45 45 H 1.08996 * 109.47116 * 300.00301 * 17 14 13 46 46 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 47 47 H 1.08999 * 109.49891 * 58.58386 * 19 5 4 48 48 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 49 49 H 1.09004 * 109.70226 * 174.48951 * 20 19 5 50 50 H 0.97003 * 120.00561 * 5.76988 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1016 -2.8894 2.3804 8 6 1.4763 -4.0080 2.7978 9 8 0.5300 -4.4446 2.1724 10 6 1.9410 -4.7035 4.0173 11 7 2.9695 -4.3284 4.7994 12 6 3.0572 -5.2010 5.7708 13 7 2.0847 -6.1133 5.5882 14 6 1.8224 -7.2689 6.4497 15 6 1.1474 -6.8001 7.7402 16 6 0.9028 -8.2502 5.7204 17 6 3.1433 -7.9629 6.7880 18 7 1.4193 -5.7956 4.5315 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2873 0.8517 -1.9118 24 6 2.6490 -0.4549 -3.4860 25 7 1.6257 -1.1718 -3.8996 26 14 4.0259 -0.0214 -4.6716 27 1 3.7298 -0.6000 -6.0067 28 1 4.1351 1.4552 -4.7846 29 1 5.3075 -0.5753 -4.1657 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1241 -0.6413 1.2936 35 1 2.8566 -2.5408 2.8797 36 1 3.7794 -5.1908 6.5739 37 1 0.2064 -6.3056 7.4991 38 1 0.9527 -7.6598 8.3813 39 1 1.8027 -6.1008 8.2597 40 1 1.3837 -8.5842 4.8010 41 1 0.7073 -9.1099 6.3616 42 1 -0.0382 -7.7557 5.4794 43 1 3.7986 -7.2637 7.3075 44 1 2.9482 -8.8229 7.4286 45 1 3.6243 -8.2968 5.8686 46 1 2.0200 -3.8999 -0.0966 47 1 3.3678 -2.7405 0.0022 48 1 0.7043 -2.3203 -1.4310 49 1 2.3004 -2.5283 -2.1940 50 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947727631.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:45 Heat of formation + Delta-G solvation = 67.389961 kcal Electronic energy + Delta-G solvation = -29599.677509 eV Core-core repulsion = 25664.271868 eV Total energy + Delta-G solvation = -3935.405640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.66 seconds Orbital eigenvalues (eV) -43.69894 -39.63534 -37.97165 -37.52352 -34.61351 -32.99182 -32.50762 -31.35266 -30.71200 -29.26919 -28.16464 -28.02406 -26.97027 -25.07644 -23.84649 -23.24835 -21.83202 -21.72840 -20.43142 -20.27482 -18.67442 -17.91463 -17.23345 -16.79652 -16.54644 -16.10328 -15.17185 -14.87332 -14.75618 -14.36889 -14.26144 -14.02027 -13.71134 -13.51034 -13.37850 -13.27911 -13.08886 -12.91560 -12.84015 -12.62851 -12.43543 -12.30513 -12.07033 -11.92968 -11.63145 -11.56860 -11.15704 -10.80040 -10.70910 -10.61756 -10.56712 -10.52508 -10.33915 -10.15074 -9.98590 -9.92529 -9.71660 -9.64477 -9.18949 -8.68686 -8.29832 -6.82247 -5.99721 -3.17679 1.31417 1.84751 1.97276 3.14036 3.46315 3.53676 3.57374 3.75289 3.76526 3.98368 4.02950 4.13483 4.44428 4.63824 4.67904 4.77573 4.91196 4.95859 5.03308 5.10298 5.19439 5.24237 5.30644 5.31322 5.47616 5.48455 5.55328 5.69315 5.77980 5.86043 5.96421 6.02328 6.14056 6.22484 6.27646 6.30864 6.35283 6.40827 6.54295 6.59067 6.69692 6.84084 6.90982 7.04212 7.16735 7.30833 7.60561 7.94398 8.08539 8.35741 8.65104 9.19153 9.91357 10.36974 11.28799 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.002278 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.675179 B =12290.604906 C =12512.208147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.068 0.932 4 C -0.132 4.132 5 C 0.152 3.848 6 H 0.087 0.913 7 N -0.702 5.702 8 C 0.611 3.389 9 O -0.520 6.520 10 C 0.143 3.857 11 N -0.484 5.484 12 C 0.187 3.813 13 N -0.294 5.294 14 C 0.167 3.833 15 C -0.160 4.160 16 C -0.150 4.150 17 C -0.160 4.160 18 N -0.248 5.248 19 C -0.143 4.143 20 C 0.154 3.846 21 N -0.592 5.592 22 C -0.348 4.348 23 H 0.055 0.945 24 C -0.024 4.024 25 N -0.915 5.915 26 Si 1.064 2.936 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.405 0.595 36 H 0.221 0.779 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.021 0.979 49 H 0.080 0.920 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.648 -12.608 26.927 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 H 0.086 0.914 4 C -0.172 4.172 5 C 0.049 3.951 6 H 0.105 0.895 7 N -0.353 5.353 8 C 0.392 3.608 9 O -0.393 6.393 10 C -0.137 4.137 11 N -0.209 5.209 12 C -0.109 4.109 13 N -0.091 5.091 14 C 0.085 3.915 15 C -0.218 4.218 16 C -0.207 4.207 17 C -0.218 4.218 18 N -0.086 5.086 19 C -0.183 4.183 20 C 0.028 3.972 21 N -0.314 5.314 22 C -0.477 4.477 23 H 0.073 0.927 24 C -0.226 4.226 25 N -0.555 5.555 26 Si 0.894 3.106 27 H -0.212 1.212 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.240 0.760 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.038 0.962 49 H 0.098 0.902 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.177 -13.168 24.512 27.910 hybrid contribution 0.052 0.292 2.287 2.307 sum 2.229 -12.876 26.799 29.815 Atomic orbital electron populations 1.22340 0.98809 1.01052 1.00277 1.20357 0.91619 0.95282 0.86321 0.91430 1.22226 1.01523 0.93806 0.99647 1.21145 0.99840 0.91453 0.82652 0.89472 1.46017 1.34759 1.25897 1.28651 1.16323 0.82611 0.80689 0.81172 1.90832 1.27515 1.65377 1.55548 1.23920 0.95131 0.94709 0.99949 1.71281 1.18545 1.26495 1.04594 1.26291 0.95956 0.87883 1.00764 1.47790 1.21755 1.21257 1.18288 1.21164 0.98073 0.82951 0.89341 1.22268 1.01611 1.02964 0.94944 1.22003 1.00012 0.97888 1.00801 1.22262 0.94729 1.01472 1.03359 1.74308 1.19638 1.15479 0.99181 1.22469 1.00561 0.99121 0.96186 1.20902 0.97320 0.84012 0.94965 1.44199 1.64590 1.02541 1.20098 1.19934 1.25292 1.14038 0.88472 0.92723 1.25848 1.01435 0.99676 0.95640 1.70763 1.05581 1.41127 1.38024 0.83535 0.75310 0.75555 0.76165 1.21179 1.22044 1.22119 0.93241 0.94148 0.92744 0.92280 0.91613 0.76002 0.76318 0.91206 0.89565 0.91348 0.91189 0.90297 0.90469 0.91119 0.89293 0.91079 0.92627 0.92142 0.96151 0.90160 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.02 37.16 0.34 -2.89 16 2 C 0.17 3.58 3.27 -67.82 -0.22 3.36 16 3 H 0.07 1.42 7.93 -51.93 -0.41 1.01 16 4 C -0.13 -2.31 4.99 -26.84 -0.13 -2.45 16 5 C 0.15 2.79 2.21 -67.89 -0.15 2.64 16 6 H 0.09 1.75 5.93 -51.93 -0.31 1.44 16 7 N -0.70 -11.47 5.07 -54.70 -0.28 -11.75 16 8 C 0.61 10.90 7.80 -12.32 -0.10 10.81 16 9 O -0.52 -11.02 16.75 5.32 0.09 -10.93 16 10 C 0.14 2.22 7.96 -156.35 -1.24 0.97 16 11 N -0.48 -6.26 11.09 -12.36 -0.14 -6.40 16 12 C 0.19 1.69 11.71 -90.48 -1.06 0.63 16 13 N -0.29 -2.86 3.16 -49.84 -0.16 -3.02 16 14 C 0.17 0.96 1.22 -131.82 -0.16 0.80 16 15 C -0.16 -0.64 8.72 37.16 0.32 -0.32 16 16 C -0.15 -0.95 8.05 37.15 0.30 -0.65 16 17 C -0.16 -0.51 8.28 37.16 0.31 -0.20 16 18 N -0.25 -3.53 11.09 32.08 0.36 -3.18 16 19 C -0.14 -2.95 5.65 -26.61 -0.15 -3.10 16 20 C 0.15 3.74 4.29 -3.72 -0.02 3.73 16 21 N -0.59 -14.71 2.54 -165.03 -0.42 -15.13 16 22 C -0.35 -9.67 9.48 -15.05 -0.14 -9.82 16 23 H 0.05 1.52 7.94 -52.49 -0.42 1.10 16 24 C -0.02 -0.67 4.69 -17.43 -0.08 -0.75 16 25 N -0.92 -27.73 12.45 55.49 0.69 -27.04 16 26 Si 1.06 25.51 29.98 -169.99 -5.10 20.42 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H 0.05 0.99 5.74 -51.93 -0.30 0.69 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.41 5.83 8.31 -40.82 -0.34 5.49 16 36 H 0.22 0.89 7.53 -52.48 -0.39 0.50 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.07 0.22 8.14 -51.92 -0.42 -0.21 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 43 H 0.07 0.13 7.34 -51.93 -0.38 -0.25 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.02 0.51 7.23 -51.93 -0.38 0.14 16 49 H 0.08 2.18 6.38 -51.93 -0.33 1.85 16 50 H 0.27 8.27 6.71 -40.82 -0.27 7.99 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -35.22 395.73 -9.42 -44.64 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.24 Total: 3.66 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.19 Total: 2.74 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: 0.05 Total: -66.50 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.10 Total: 20.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.22 -9.42 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947727631.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.033 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.67 seconds