Wall clock time and date at job start Tue Mar 31 2020 23:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.70270 * 2 1 4 4 C 1.53183 * 109.58689 * 120.35724 * 2 1 3 5 5 C 1.53037 * 109.31353 * 174.42059 * 4 2 1 6 6 H 1.09004 * 109.45047 * 58.64906 * 5 4 2 7 7 N 1.46501 * 109.46102 * 178.61486 * 5 4 2 8 8 C 1.34781 * 120.00247 * 205.34488 * 7 5 4 9 9 O 1.21560 * 119.99545 * 359.72179 * 8 7 5 10 10 C 1.47870 * 120.00275 * 179.72640 * 8 7 5 11 11 N 1.34551 * 126.04620 * 0.02562 * 10 8 7 12 12 C 1.30867 * 107.26721 * 180.02562 * 11 10 8 13 13 N 1.34584 * 107.62493 * 359.97438 * 12 11 10 14 14 C 1.46506 * 125.74965 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46903 * 75.00249 * 14 13 12 16 16 C 1.52994 * 109.47298 * 195.00176 * 14 13 12 17 17 C 1.52995 * 109.46860 * 315.00310 * 14 13 12 18 18 N 1.28848 * 108.50365 * 359.73601 * 13 12 11 19 19 C 1.53039 * 109.54013 * 298.63296 * 5 4 2 20 20 C 1.53198 * 109.30878 * 61.36274 * 19 5 4 21 21 N 1.46921 * 108.77887 * 305.36763 * 20 19 5 22 22 C 1.36934 * 120.63079 * 233.63364 * 21 20 19 23 23 H 1.07995 * 120.00063 * 150.15760 * 22 21 20 24 24 C 1.38810 * 119.99959 * 330.14920 * 22 21 20 25 25 N 1.31629 * 119.99881 * 344.49723 * 24 22 21 26 26 Si 1.86796 * 120.00126 * 164.49268 * 24 22 21 27 27 H 1.48494 * 109.47169 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47200 * 120.00430 * 26 24 22 29 29 H 1.48501 * 109.47279 * 240.00260 * 26 24 22 30 30 H 1.09000 * 109.47281 * 180.35216 * 1 2 3 31 31 H 1.09008 * 109.47134 * 300.35417 * 1 2 3 32 32 H 1.09001 * 109.46911 * 60.35098 * 1 2 3 33 33 H 1.09007 * 109.49834 * 54.46847 * 4 2 1 34 34 H 1.09005 * 109.49845 * 294.37688 * 4 2 1 35 35 H 0.97003 * 120.00448 * 25.07031 * 7 5 4 36 36 H 1.07995 * 126.19079 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46974 * 59.99549 * 15 14 13 38 38 H 1.08999 * 109.47342 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46764 * 300.00044 * 15 14 13 40 40 H 1.09001 * 109.47110 * 60.00217 * 16 14 13 41 41 H 1.08998 * 109.47397 * 180.02562 * 16 14 13 42 42 H 1.09005 * 109.47343 * 299.99962 * 16 14 13 43 43 H 1.08997 * 109.47425 * 60.00326 * 17 14 13 44 44 H 1.09009 * 109.46900 * 179.97438 * 17 14 13 45 45 H 1.08991 * 109.47167 * 299.99592 * 17 14 13 46 46 H 1.09000 * 109.50049 * 181.31267 * 19 5 4 47 47 H 1.08993 * 109.50170 * 301.41538 * 19 5 4 48 48 H 1.09006 * 109.58666 * 65.15440 * 20 19 5 49 49 H 1.08998 * 109.58807 * 185.57618 * 20 19 5 50 50 H 0.96998 * 119.99214 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 6 3.5675 -0.8480 1.1700 6 1 4.0060 0.1474 1.0991 7 7 4.0652 -1.5158 2.3753 8 6 5.3272 -1.2969 2.7946 9 8 6.0541 -0.5492 2.1699 10 6 5.8277 -1.9663 4.0145 11 7 5.1320 -2.8134 4.7947 12 6 5.9243 -3.1846 5.7680 13 7 7.1070 -2.5679 5.5883 14 6 8.2827 -2.7031 6.4519 15 6 8.9460 -4.0590 6.2019 16 6 9.2771 -1.5834 6.1386 17 6 7.8527 -2.6080 7.9171 18 7 7.0331 -1.8435 4.5253 19 6 3.9569 -1.6658 -0.0636 20 6 3.4650 -0.9469 -1.3238 21 7 2.0225 -0.6995 -1.1946 22 6 1.1536 -1.1134 -2.1686 23 1 0.1397 -1.3806 -1.9097 24 6 1.5759 -1.1895 -3.4887 25 7 2.6865 -0.5884 -3.8601 26 14 0.5682 -2.1449 -4.7381 27 1 -0.6270 -2.7224 -4.0725 28 1 0.1354 -1.2325 -5.8269 29 1 1.3948 -3.2389 -5.3083 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3634 0.5194 0.8869 32 1 -0.3633 0.5084 -0.8931 33 1 1.6029 -1.7254 1.2912 34 1 1.7660 -0.1669 2.1368 35 1 3.4852 -2.1125 2.8738 36 1 5.6744 -3.8630 6.5702 37 1 9.2522 -4.1267 5.1581 38 1 9.8204 -4.1598 6.8448 39 1 8.2375 -4.8567 6.4252 40 1 8.8046 -0.6174 6.3167 41 1 10.1520 -1.6842 6.7808 42 1 9.5835 -1.6511 5.0946 43 1 7.1443 -3.4057 8.1404 44 1 8.7274 -2.7090 8.5598 45 1 7.3803 -1.6421 8.0952 46 1 5.0412 -1.7696 -0.1038 47 1 3.4983 -2.6528 -0.0054 48 1 3.9902 0.0021 -1.4318 49 1 3.6517 -1.5717 -2.1973 50 1 2.9817 -0.6420 -4.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947727633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:06 Heat of formation + Delta-G solvation = 70.506541 kcal Electronic energy + Delta-G solvation = -29423.181809 eV Core-core repulsion = 25487.911313 eV Total energy + Delta-G solvation = -3935.270495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.66233 -39.49716 -37.82099 -37.37759 -34.53586 -32.88425 -32.29539 -31.47614 -30.89845 -29.40807 -28.14192 -27.99939 -26.36180 -25.30547 -24.11856 -23.21233 -21.92138 -20.98817 -20.38210 -19.95005 -19.23985 -17.88536 -16.76234 -16.74446 -16.18809 -15.92837 -15.17209 -14.85724 -14.77316 -14.69650 -14.17699 -13.90606 -13.79903 -13.52871 -13.30465 -13.17724 -13.04826 -12.89596 -12.73639 -12.59096 -12.41265 -12.27634 -11.90365 -11.54409 -11.53350 -11.14796 -11.05229 -10.86567 -10.84128 -10.60646 -10.57768 -10.53102 -10.23922 -10.11945 -9.98461 -9.93370 -9.67618 -9.65918 -9.33402 -8.62702 -8.35928 -6.56828 -5.71054 -3.15075 1.35543 1.88179 2.01643 3.20010 3.41640 3.49325 3.51060 3.52079 3.79270 4.02120 4.05644 4.15899 4.48179 4.54597 4.72561 4.79563 4.93480 4.98525 5.06670 5.12505 5.21343 5.32708 5.34861 5.45833 5.48713 5.51392 5.66873 5.71632 5.86261 5.89543 6.06966 6.18018 6.23736 6.31980 6.34930 6.39014 6.49427 6.51163 6.60007 6.72096 6.87475 6.96726 7.09778 7.17438 7.45685 7.66355 7.76423 7.89243 7.99495 8.42554 8.53787 9.28856 9.92554 10.50214 11.37671 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.002236 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.269027 B =12517.383028 C =12851.347494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.084 0.916 7 N -0.702 5.702 8 C 0.610 3.390 9 O -0.520 6.520 10 C 0.144 3.856 11 N -0.484 5.484 12 C 0.186 3.814 13 N -0.295 5.295 14 C 0.167 3.833 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.160 4.160 18 N -0.248 5.248 19 C -0.147 4.147 20 C 0.176 3.824 21 N -0.588 5.588 22 C -0.249 4.249 23 H 0.070 0.930 24 C 0.001 3.999 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.278 1.278 28 H -0.291 1.291 29 H -0.290 1.290 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.404 0.596 36 H 0.220 0.780 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.021 0.979 49 H 0.088 0.912 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.422 -6.760 26.497 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.102 0.898 7 N -0.353 5.353 8 C 0.391 3.609 9 O -0.392 6.392 10 C -0.136 4.136 11 N -0.209 5.209 12 C -0.109 4.109 13 N -0.091 5.091 14 C 0.085 3.915 15 C -0.218 4.218 16 C -0.207 4.207 17 C -0.218 4.218 18 N -0.087 5.087 19 C -0.188 4.188 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.217 1.217 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.039 0.961 49 H 0.106 0.894 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.155 -5.874 25.490 28.438 hybrid contribution -0.604 -1.116 -0.075 1.271 sum 10.551 -6.990 25.415 28.392 Atomic orbital electron populations 1.21790 0.95739 1.01391 1.00334 1.20364 0.93080 0.93595 0.86577 0.95479 1.22388 0.93428 1.01824 0.99713 1.21130 0.94426 0.96744 0.82764 0.89833 1.46045 1.12318 1.48096 1.28819 1.16330 0.82600 0.80833 0.81140 1.90838 1.56330 1.36510 1.55563 1.23954 0.88543 1.01123 1.00008 1.71284 1.31299 1.13680 1.04648 1.26282 0.83049 1.00921 1.00698 1.47785 1.12620 1.30705 1.18024 1.21155 0.82828 0.98676 0.88860 1.22271 1.01538 0.94104 1.03922 1.22000 0.97734 0.96975 1.03972 1.22257 1.03408 1.03681 0.92430 1.74309 1.20982 1.14402 0.98959 1.22591 0.99842 0.99684 0.96666 1.20737 0.83254 0.97295 0.93769 1.44175 1.02986 1.64899 1.19052 1.19197 0.95172 1.37405 0.86063 0.91227 1.25117 0.97927 0.99652 0.97020 1.70043 1.24120 1.43864 1.16587 0.86267 0.79600 0.79600 0.81560 1.20293 1.21831 1.21688 0.92770 0.94301 0.91855 0.91628 0.92550 0.76077 0.76360 0.91157 0.89589 0.91346 0.91236 0.90328 0.90433 0.91132 0.89324 0.91120 0.92819 0.92507 0.96065 0.89360 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.16 0.30 -2.24 16 2 C 0.17 3.58 3.50 -67.60 -0.24 3.34 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -2.35 4.84 -26.62 -0.13 -2.48 16 5 C 0.15 2.84 2.42 -67.89 -0.16 2.68 16 6 H 0.08 1.72 7.57 -51.93 -0.39 1.32 16 7 N -0.70 -11.60 5.07 -54.70 -0.28 -11.88 16 8 C 0.61 11.02 7.80 -12.32 -0.10 10.92 16 9 O -0.52 -11.17 16.74 5.31 0.09 -11.08 16 10 C 0.14 2.25 7.96 -156.36 -1.24 1.01 16 11 N -0.48 -6.32 11.09 -12.37 -0.14 -6.46 16 12 C 0.19 1.71 11.71 -90.48 -1.06 0.65 16 13 N -0.29 -2.90 3.16 -49.84 -0.16 -3.06 16 14 C 0.17 0.98 1.23 -131.82 -0.16 0.82 16 15 C -0.16 -0.69 8.72 37.16 0.32 -0.37 16 16 C -0.15 -0.96 8.05 37.15 0.30 -0.66 16 17 C -0.16 -0.49 8.28 37.15 0.31 -0.19 16 18 N -0.25 -3.58 11.09 32.07 0.36 -3.22 16 19 C -0.15 -3.09 5.66 -26.61 -0.15 -3.24 16 20 C 0.18 4.36 5.28 -3.71 -0.02 4.34 16 21 N -0.59 -14.68 2.99 -164.78 -0.49 -15.17 16 22 C -0.25 -6.71 8.57 -15.06 -0.13 -6.84 16 23 H 0.07 1.83 6.24 -52.49 -0.33 1.50 16 24 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 25 N -0.90 -26.57 11.23 55.49 0.62 -25.95 16 26 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 31 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.06 1.28 7.63 -51.93 -0.40 0.89 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.40 5.88 8.31 -40.82 -0.34 5.54 16 36 H 0.22 0.92 7.53 -52.49 -0.39 0.52 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 43 H 0.07 0.13 7.34 -51.93 -0.38 -0.25 16 44 H 0.09 0.11 8.14 -51.92 -0.42 -0.31 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 2.43 6.15 -51.93 -0.32 2.12 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -34.58 397.70 -9.69 -44.27 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.41 Total: 2.01 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -2.25 Total: 7.69 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.09 Total: -65.73 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.58 -9.69 -44.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947727633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.780 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds