Wall clock time and date at job start Tue Mar 31 2020 23:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.70270 * 2 1 4 4 C 1.53183 * 109.58689 * 120.35724 * 2 1 3 5 5 C 1.53037 * 109.31353 * 174.42059 * 4 2 1 6 6 H 1.09004 * 109.45047 * 58.64906 * 5 4 2 7 7 N 1.46501 * 109.46102 * 178.61486 * 5 4 2 8 8 C 1.34781 * 120.00247 * 205.34488 * 7 5 4 9 9 O 1.21560 * 119.99545 * 359.72179 * 8 7 5 10 10 C 1.47870 * 120.00275 * 179.72640 * 8 7 5 11 11 N 1.34551 * 126.04620 * 0.02562 * 10 8 7 12 12 C 1.30867 * 107.26721 * 180.02562 * 11 10 8 13 13 N 1.34584 * 107.62493 * 359.97438 * 12 11 10 14 14 C 1.46506 * 125.74965 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46903 * 75.00249 * 14 13 12 16 16 C 1.52994 * 109.47298 * 195.00176 * 14 13 12 17 17 C 1.52995 * 109.46860 * 315.00310 * 14 13 12 18 18 N 1.28848 * 108.50365 * 359.73601 * 13 12 11 19 19 C 1.53039 * 109.54013 * 298.63296 * 5 4 2 20 20 C 1.53198 * 109.30878 * 61.36274 * 19 5 4 21 21 N 1.46921 * 108.77887 * 305.36763 * 20 19 5 22 22 C 1.36934 * 120.63079 * 233.63364 * 21 20 19 23 23 H 1.07995 * 120.00063 * 150.15760 * 22 21 20 24 24 C 1.38810 * 119.99959 * 330.14920 * 22 21 20 25 25 N 1.31629 * 119.99881 * 344.49723 * 24 22 21 26 26 Si 1.86796 * 120.00126 * 164.49268 * 24 22 21 27 27 H 1.48494 * 109.47169 * 0.02562 * 26 24 22 28 28 H 1.48506 * 109.47200 * 120.00430 * 26 24 22 29 29 H 1.48501 * 109.47279 * 240.00260 * 26 24 22 30 30 H 1.09000 * 109.47281 * 180.35216 * 1 2 3 31 31 H 1.09008 * 109.47134 * 300.35417 * 1 2 3 32 32 H 1.09001 * 109.46911 * 60.35098 * 1 2 3 33 33 H 1.09007 * 109.49834 * 54.46847 * 4 2 1 34 34 H 1.09005 * 109.49845 * 294.37688 * 4 2 1 35 35 H 0.97003 * 120.00448 * 25.07031 * 7 5 4 36 36 H 1.07995 * 126.19079 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46974 * 59.99549 * 15 14 13 38 38 H 1.08999 * 109.47342 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.46764 * 300.00044 * 15 14 13 40 40 H 1.09001 * 109.47110 * 60.00217 * 16 14 13 41 41 H 1.08998 * 109.47397 * 180.02562 * 16 14 13 42 42 H 1.09005 * 109.47343 * 299.99962 * 16 14 13 43 43 H 1.08997 * 109.47425 * 60.00326 * 17 14 13 44 44 H 1.09009 * 109.46900 * 179.97438 * 17 14 13 45 45 H 1.08991 * 109.47167 * 299.99592 * 17 14 13 46 46 H 1.09000 * 109.50049 * 181.31267 * 19 5 4 47 47 H 1.08993 * 109.50170 * 301.41538 * 19 5 4 48 48 H 1.09006 * 109.58666 * 65.15440 * 20 19 5 49 49 H 1.08998 * 109.58807 * 185.57618 * 20 19 5 50 50 H 0.96998 * 119.99214 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 6 3.5675 -0.8480 1.1700 6 1 4.0060 0.1474 1.0991 7 7 4.0652 -1.5158 2.3753 8 6 5.3272 -1.2969 2.7946 9 8 6.0541 -0.5492 2.1699 10 6 5.8277 -1.9663 4.0145 11 7 5.1320 -2.8134 4.7947 12 6 5.9243 -3.1846 5.7680 13 7 7.1070 -2.5679 5.5883 14 6 8.2827 -2.7031 6.4519 15 6 8.9460 -4.0590 6.2019 16 6 9.2771 -1.5834 6.1386 17 6 7.8527 -2.6080 7.9171 18 7 7.0331 -1.8435 4.5253 19 6 3.9569 -1.6658 -0.0636 20 6 3.4650 -0.9469 -1.3238 21 7 2.0225 -0.6995 -1.1946 22 6 1.1536 -1.1134 -2.1686 23 1 0.1397 -1.3806 -1.9097 24 6 1.5759 -1.1895 -3.4887 25 7 2.6865 -0.5884 -3.8601 26 14 0.5682 -2.1449 -4.7381 27 1 -0.6270 -2.7224 -4.0725 28 1 0.1354 -1.2325 -5.8269 29 1 1.3948 -3.2389 -5.3083 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3634 0.5194 0.8869 32 1 -0.3633 0.5084 -0.8931 33 1 1.6029 -1.7254 1.2912 34 1 1.7660 -0.1669 2.1368 35 1 3.4852 -2.1125 2.8738 36 1 5.6744 -3.8630 6.5702 37 1 9.2522 -4.1267 5.1581 38 1 9.8204 -4.1598 6.8448 39 1 8.2375 -4.8567 6.4252 40 1 8.8046 -0.6174 6.3167 41 1 10.1520 -1.6842 6.7808 42 1 9.5835 -1.6511 5.0946 43 1 7.1443 -3.4057 8.1404 44 1 8.7274 -2.7090 8.5598 45 1 7.3803 -1.6421 8.0952 46 1 5.0412 -1.7696 -0.1038 47 1 3.4983 -2.6528 -0.0054 48 1 3.9902 0.0021 -1.4318 49 1 3.6517 -1.5717 -2.1973 50 1 2.9817 -0.6420 -4.7825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947727633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:05 Heat of formation + Delta-G solvation = 48.092144 kcal Electronic energy + Delta-G solvation = -29424.153770 eV Core-core repulsion = 25487.911313 eV Total energy + Delta-G solvation = -3936.242457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 13.89 seconds Orbital eigenvalues (eV) -44.54520 -40.97481 -39.25602 -38.20566 -36.19102 -34.28248 -33.68494 -32.98599 -32.08148 -31.13394 -28.49392 -28.39856 -28.02489 -26.90945 -25.58385 -24.01178 -23.67761 -22.45893 -21.47732 -21.08602 -20.92018 -18.98903 -18.21360 -17.61930 -17.48500 -17.33928 -16.92342 -15.98966 -15.91732 -15.69818 -15.52003 -15.20169 -15.01885 -14.94052 -14.81111 -14.54723 -14.31758 -13.79917 -13.32856 -13.30087 -13.23983 -13.03219 -12.96861 -12.76849 -12.73262 -12.68330 -12.60767 -12.39765 -12.35772 -12.05964 -12.00054 -11.87595 -11.72021 -11.53694 -11.51853 -11.47991 -11.42021 -11.10264 -10.61467 -10.54410 -10.07843 -8.63182 -7.82243 -5.29084 0.31114 1.10236 1.15805 1.47752 1.49587 1.59873 1.99198 2.24802 2.54072 3.06731 3.27262 3.34585 3.60301 3.66237 3.75751 3.78398 3.84910 3.90458 4.04237 4.26342 4.38282 4.55073 4.58277 4.60849 4.61521 4.68828 4.70787 4.75469 4.78185 4.79852 4.80812 4.91671 4.96167 5.06516 5.08076 5.10676 5.15845 5.16940 5.22339 5.36250 5.38778 5.42715 5.52728 5.57345 5.69349 5.71405 5.75251 6.37528 6.45092 6.96301 7.11905 7.18370 7.89849 8.43744 9.25617 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.002236 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.269027 B =12517.383028 C =12851.347494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.013 0.987 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.061 0.939 7 N -0.687 5.687 8 C 0.608 3.392 9 O -0.566 6.566 10 C 0.115 3.885 11 N -0.501 5.501 12 C 0.202 3.798 13 N -0.287 5.287 14 C 0.156 3.844 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.155 4.155 18 N -0.274 5.274 19 C -0.131 4.131 20 C 0.185 3.815 21 N -0.603 5.603 22 C -0.246 4.246 23 H 0.081 0.919 24 C -0.059 4.059 25 N -0.941 5.941 26 Si 0.964 3.036 27 H -0.260 1.260 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.418 0.582 36 H 0.273 0.727 37 H 0.043 0.957 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.063 0.937 48 H -0.010 1.010 49 H 0.055 0.945 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.334 -9.018 30.689 33.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.054 3.946 3 H 0.031 0.969 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.079 0.921 7 N -0.338 5.338 8 C 0.391 3.609 9 O -0.442 6.442 10 C -0.163 4.163 11 N -0.227 5.227 12 C -0.092 4.092 13 N -0.083 5.083 14 C 0.076 3.924 15 C -0.214 4.214 16 C -0.207 4.207 17 C -0.212 4.212 18 N -0.115 5.115 19 C -0.171 4.171 20 C 0.059 3.941 21 N -0.326 5.326 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.254 4.254 25 N -0.588 5.588 26 Si 0.793 3.207 27 H -0.184 1.184 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.256 0.744 36 H 0.289 0.711 37 H 0.062 0.938 38 H 0.132 0.868 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.132 0.868 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.008 0.992 49 H 0.074 0.926 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.034 -8.159 29.750 32.440 hybrid contribution -0.151 -0.399 -1.226 1.298 sum 9.883 -8.558 28.524 31.378 Atomic orbital electron populations 1.21706 0.93623 1.01787 1.01223 1.20645 0.94880 0.92909 0.86215 0.96882 1.22202 0.91825 1.02497 0.99133 1.20814 0.95442 0.95263 0.82642 0.92056 1.45744 1.12229 1.47890 1.27911 1.16685 0.82368 0.80163 0.81641 1.90805 1.57492 1.38625 1.57322 1.23390 0.89603 1.03078 1.00252 1.71215 1.32248 1.13766 1.05487 1.27245 0.81824 0.99856 1.00285 1.48213 1.14016 1.29279 1.16834 1.21677 0.81618 0.99161 0.89924 1.22295 1.02884 0.93321 1.02928 1.22021 0.99173 0.96612 1.02915 1.22300 1.05047 1.03845 0.90054 1.74231 1.20873 1.15723 1.00667 1.22333 0.98999 0.99714 0.96100 1.20420 0.83803 0.95465 0.94440 1.44430 1.02561 1.65580 1.20075 1.19582 0.95653 1.35920 0.86423 0.90107 1.25914 0.99216 1.01119 0.99104 1.70218 1.26165 1.45952 1.16495 0.85238 0.78550 0.77852 0.79033 1.18447 1.22319 1.22271 0.92544 0.90410 0.93977 0.90446 0.89186 0.74447 0.71111 0.93793 0.86766 0.89795 0.93017 0.87109 0.93310 0.88916 0.86756 0.92361 0.93881 0.91869 0.99237 0.92630 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 7.95 71.98 0.57 -3.89 16 2 C 0.16 6.58 3.50 44.97 0.16 6.73 16 3 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 4 C -0.12 -3.90 4.84 30.67 0.15 -3.75 16 5 C 0.16 6.10 2.42 45.02 0.11 6.21 16 6 H 0.06 2.61 7.57 -2.38 -0.02 2.60 16 7 N -0.69 -22.47 5.07 -445.24 -2.26 -24.72 16 8 C 0.61 22.54 7.80 86.79 0.68 23.21 16 9 O -0.57 -25.68 16.74 -3.90 -0.07 -25.74 16 10 C 0.12 3.62 7.96 137.13 1.09 4.71 16 11 N -0.50 -12.17 11.09 -193.04 -2.14 -14.31 16 12 C 0.20 3.08 11.71 180.30 2.11 5.19 16 13 N -0.29 -5.15 3.16 -311.59 -0.99 -6.14 16 14 C 0.16 1.44 1.23 3.60 0.00 1.44 16 15 C -0.16 -0.88 8.72 71.98 0.63 -0.25 16 16 C -0.15 -1.80 8.05 71.98 0.58 -1.22 16 17 C -0.15 -0.32 8.28 71.98 0.60 0.28 16 18 N -0.27 -7.96 11.09 -52.44 -0.58 -8.54 16 19 C -0.13 -5.67 5.66 30.67 0.17 -5.50 16 20 C 0.19 9.70 5.28 86.37 0.46 10.16 16 21 N -0.60 -30.67 2.99 -675.24 -2.02 -32.68 16 22 C -0.25 -13.35 8.57 84.03 0.72 -12.63 16 23 H 0.08 4.16 6.24 -2.91 -0.02 4.14 16 24 C -0.06 -3.36 4.94 84.86 0.42 -2.94 16 25 N -0.94 -58.00 11.23 21.65 0.24 -57.75 16 26 Si 0.96 45.77 29.58 68.60 2.03 47.80 16 27 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 30 H 0.06 1.97 7.44 -2.39 -0.02 1.95 16 31 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.04 1.65 7.63 -2.39 -0.02 1.63 16 33 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.42 11.47 8.31 -92.71 -0.77 10.70 16 36 H 0.27 0.74 7.53 -2.91 -0.02 0.72 16 37 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.05 0.87 8.02 -2.38 -0.02 0.85 16 43 H 0.09 -0.18 7.34 -2.39 -0.02 -0.20 16 44 H 0.11 -0.29 8.14 -2.38 -0.02 -0.30 16 45 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 48 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 49 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -81.75 397.70 2.83 -78.92 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.16 Total: 15.43 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 8.44 Total: 27.74 kcal Atomic # 7 Polarization: -136.41 SS G_CDS: -7.74 Total: -144.15 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.07 Total: -25.74 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -81.75 2.83 -78.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947727633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.014 kcal (2) G-P(sol) polarization free energy of solvation -81.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.90 seconds