Wall clock time and date at job start Wed Apr 1 2020 00:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.46227 * 2 1 4 4 C 1.53358 * 109.42183 * 240.10199 * 2 1 3 5 5 C 1.53188 * 109.15126 * 178.67300 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57704 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53041 * 109.46440 * 119.97191 * 2 1 3 17 17 H 1.09006 * 109.52170 * 61.41915 * 16 2 1 18 18 N 1.46496 * 109.49714 * 301.34242 * 16 2 1 19 19 C 1.34773 * 120.00453 * 155.15792 * 18 16 2 20 20 O 1.21595 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.47521 * 120.00576 * 179.97438 * 19 18 16 22 22 C 1.36598 * 125.77378 * 180.02562 * 21 19 18 23 23 N 1.34816 * 106.83734 * 179.97438 * 22 21 19 24 24 C 1.46500 * 126.58918 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.47204 * 74.99940 * 24 23 22 26 26 C 1.53000 * 109.47015 * 195.00005 * 24 23 22 27 27 C 1.53006 * 109.47213 * 314.99763 * 24 23 22 28 28 N 1.40208 * 106.81431 * 359.97438 * 23 22 21 29 29 N 1.28764 * 108.36699 * 359.75009 * 28 23 22 30 30 H 1.08998 * 109.47686 * 300.02567 * 1 2 3 31 31 H 1.09003 * 109.46966 * 60.03069 * 1 2 3 32 32 H 1.09002 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68305 * 58.70700 * 4 2 1 34 34 H 1.09002 * 109.46954 * 298.51478 * 4 2 1 35 35 H 1.08997 * 109.58674 * 294.71955 * 5 4 2 36 36 H 1.09000 * 109.58865 * 174.43595 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58387 * 173.39335 * 15 6 5 39 39 H 1.09004 * 109.58558 * 293.67310 * 15 6 5 40 40 H 0.97001 * 119.99965 * 335.15599 * 18 16 2 41 41 H 1.07997 * 126.57500 * 359.95702 * 22 21 19 42 42 H 1.08998 * 109.47235 * 60.00250 * 25 24 23 43 43 H 1.09003 * 109.46617 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47175 * 299.99316 * 25 24 23 45 45 H 1.08996 * 109.46981 * 59.99426 * 26 24 23 46 46 H 1.08991 * 109.47270 * 179.97438 * 26 24 23 47 47 H 1.09006 * 109.46773 * 299.99972 * 26 24 23 48 48 H 1.09004 * 109.46860 * 60.00185 * 27 24 23 49 49 H 1.08999 * 109.46959 * 180.02562 * 27 24 23 50 50 H 1.08996 * 109.46876 * 300.00631 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2538 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2487 -0.0002 7 6 4.9764 -2.2732 -0.0003 8 1 5.0044 -2.9701 -0.8250 9 6 5.8615 -2.4163 1.0595 10 7 6.0660 -1.4125 1.8860 11 14 6.7623 -4.0330 1.3125 12 1 8.0467 -4.0059 0.5678 13 1 7.0331 -4.2275 2.7596 14 1 5.9230 -5.1510 0.8115 15 6 3.5713 -0.6886 1.2641 16 6 2.0399 -0.7209 1.2500 17 1 1.6978 -1.7558 1.2387 18 7 1.5256 -0.0490 2.4459 19 6 1.4001 -0.7318 3.6011 20 8 1.7135 -1.9056 3.6506 21 6 0.8828 -0.0551 4.8055 22 6 0.7085 -0.6306 6.0321 23 7 0.2200 0.3262 6.8465 24 6 -0.1236 0.1757 8.2627 25 6 1.1584 0.1266 9.0962 26 6 -0.9773 1.3642 8.7094 27 6 -0.9111 -1.1210 8.4614 28 7 0.1053 1.4933 6.0780 29 7 0.5094 1.2337 4.8833 30 1 -0.3634 0.5142 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6592 -0.2216 -2.1448 34 1 1.6980 -1.7559 -1.2422 35 1 3.9142 0.3412 -1.3673 36 1 3.9438 -1.2826 -2.0988 37 1 6.6847 -1.5123 2.6264 38 1 3.9416 -1.2847 2.0982 39 1 3.9163 0.3401 1.3686 40 1 1.2753 0.8873 2.4064 41 1 0.9210 -1.6555 6.2980 42 1 1.7194 1.0504 8.9548 43 1 0.9026 0.0151 10.1499 44 1 1.7665 -0.7202 8.7781 45 1 -1.8905 1.3992 8.1155 46 1 -1.2334 1.2521 9.7628 47 1 -0.4162 2.2881 8.5678 48 1 -0.3030 -1.9678 8.1431 49 1 -1.1672 -1.2328 9.5149 50 1 -1.8244 -1.0861 7.8675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966597321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:26 Heat of formation + Delta-G solvation = 46.974954 kcal Electronic energy + Delta-G solvation = -29999.973231 eV Core-core repulsion = 26063.682329 eV Total energy + Delta-G solvation = -3936.290902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = -0.69 seconds Orbital eigenvalues (eV) -43.33321 -40.87560 -39.10223 -38.28932 -36.08758 -34.69231 -33.05401 -32.81159 -32.07369 -30.31774 -28.97492 -28.44921 -28.43514 -25.97731 -25.10364 -24.64524 -23.24912 -22.59973 -21.78742 -21.19462 -20.53958 -18.75365 -18.59539 -17.36443 -17.20592 -17.13913 -16.73007 -15.84524 -15.74340 -15.67262 -15.32072 -15.25311 -15.06942 -14.97653 -14.76862 -14.41916 -14.08227 -13.69403 -13.52866 -13.41012 -13.35327 -13.25600 -13.18691 -13.04864 -12.79636 -12.70743 -12.54647 -12.47166 -12.37602 -12.34357 -12.17102 -11.98994 -11.90068 -11.62984 -11.51246 -11.28853 -11.19474 -11.04824 -10.53954 -10.41999 -10.02855 -8.67667 -7.87398 -5.33828 0.12100 0.61670 1.01026 1.42456 1.46337 1.55227 2.10910 2.28688 2.51128 3.14389 3.22867 3.29549 3.62924 3.66643 3.75411 3.79899 3.84717 3.93217 4.01874 4.15777 4.17617 4.47939 4.50828 4.55394 4.58046 4.60023 4.66098 4.67240 4.74806 4.75555 4.77927 4.79976 4.93379 4.99362 5.05496 5.13591 5.17029 5.18535 5.21544 5.26194 5.29357 5.44123 5.45904 5.52544 5.54407 5.63232 5.78787 6.36851 6.49603 6.90505 7.12095 7.21489 7.85727 8.36223 9.17781 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.003273 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.508486 B = 8553.082393 C =10179.192350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.113 4.113 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.264 4.264 8 H 0.070 0.930 9 C -0.051 4.051 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.278 1.278 13 H -0.296 1.296 14 H -0.270 1.270 15 C 0.180 3.820 16 C 0.142 3.858 17 H 0.058 0.942 18 N -0.694 5.694 19 C 0.597 3.403 20 O -0.574 6.574 21 C -0.118 4.118 22 C 0.103 3.897 23 N -0.337 5.337 24 C 0.157 3.843 25 C -0.160 4.160 26 C -0.146 4.146 27 C -0.160 4.160 28 N -0.078 5.078 29 N -0.224 5.224 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.247 0.753 38 H 0.046 0.954 39 H -0.006 1.006 40 H 0.411 0.589 41 H 0.222 0.778 42 H 0.054 0.946 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.112 0.888 47 H 0.060 0.940 48 H 0.072 0.928 49 H 0.117 0.883 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 4.605 13.817 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.394 4.394 8 H 0.087 0.913 9 C -0.247 4.247 10 N -0.578 5.578 11 Si 0.792 3.208 12 H -0.205 1.205 13 H -0.222 1.222 14 H -0.195 1.195 15 C 0.053 3.947 16 C 0.036 3.964 17 H 0.077 0.923 18 N -0.344 5.344 19 C 0.382 3.618 20 O -0.453 6.453 21 C -0.258 4.258 22 C -0.055 4.055 23 N -0.123 5.123 24 C 0.077 3.923 25 C -0.218 4.218 26 C -0.203 4.203 27 C -0.218 4.218 28 N -0.057 5.057 29 N -0.097 5.097 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.012 0.988 40 H 0.247 0.753 41 H 0.238 0.762 42 H 0.073 0.927 43 H 0.135 0.865 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.130 0.870 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.135 0.865 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.444 5.271 13.993 23.744 hybrid contribution 1.338 -1.271 0.270 1.866 sum -17.106 3.999 14.263 22.628 Atomic orbital electron populations 1.21757 0.93088 1.01786 1.02545 1.21330 0.96892 0.99275 0.93079 0.90746 1.22014 0.95639 1.00359 0.97263 1.21183 0.93634 0.96117 0.88083 1.44229 1.48161 1.39895 1.00893 1.19502 1.09410 1.03808 1.06718 0.91279 1.25835 0.98594 1.00388 0.99870 1.70196 1.38192 1.30913 1.18499 0.85322 0.78628 0.80325 0.76510 1.20456 1.22241 1.19516 1.20767 0.89615 0.94863 0.89476 1.21577 0.94894 0.96046 0.83919 0.92337 1.45713 1.64305 1.14932 1.09416 1.17111 0.77012 0.85321 0.82328 1.90807 1.52324 1.17168 1.84963 1.21355 1.15903 0.92082 0.96412 1.23526 0.94878 0.97976 0.89147 1.51160 1.41954 1.07405 1.11822 1.21632 0.97982 1.00223 0.72469 1.22333 0.94832 1.02873 1.01805 1.22016 0.98969 0.95534 1.03774 1.22346 0.99919 0.93677 1.05899 1.81805 1.21958 1.05762 0.96221 1.74590 1.09049 1.13361 1.12705 0.92588 0.90288 0.93393 0.88489 0.92724 0.96332 0.92369 0.94441 0.93545 0.98765 0.75260 0.76186 0.92733 0.86499 0.91669 0.92080 0.86979 0.92044 0.90924 0.86472 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.02 71.98 0.65 -2.78 16 2 C -0.09 -2.81 2.27 -10.66 -0.02 -2.84 16 3 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 4 C -0.11 -3.72 5.39 30.78 0.17 -3.56 16 5 C 0.13 5.66 6.50 86.36 0.56 6.22 16 6 N -0.61 -32.32 2.99 -699.11 -2.09 -34.41 16 7 C -0.26 -15.39 9.58 84.04 0.81 -14.59 16 8 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 9 C -0.05 -3.07 4.92 84.86 0.42 -2.65 16 10 N -0.93 -58.99 11.20 21.65 0.24 -58.75 16 11 Si 0.96 47.85 29.59 68.60 2.03 49.88 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 15 C 0.18 9.46 4.88 86.36 0.42 9.88 16 16 C 0.14 5.88 2.07 45.07 0.09 5.97 16 17 H 0.06 2.74 7.58 -2.38 -0.02 2.72 16 18 N -0.69 -25.87 4.37 -445.36 -1.95 -27.82 16 19 C 0.60 23.55 7.78 86.69 0.67 24.22 16 20 O -0.57 -26.83 16.53 -4.02 -0.07 -26.90 16 21 C -0.12 -3.84 6.99 40.81 0.29 -3.55 16 22 C 0.10 2.60 10.43 83.85 0.87 3.48 16 23 N -0.34 -7.28 3.44 -306.89 -1.06 -8.34 16 24 C 0.16 1.96 1.25 3.61 0.00 1.96 16 25 C -0.16 -1.68 8.74 71.98 0.63 -1.05 16 26 C -0.15 -1.51 8.11 71.98 0.58 -0.92 16 27 C -0.16 -1.27 8.30 71.98 0.60 -0.67 16 28 N -0.08 -2.16 12.91 37.02 0.48 -1.68 16 29 N -0.22 -7.10 12.04 -49.99 -0.60 -7.70 16 30 H 0.06 1.39 7.36 -2.39 -0.02 1.37 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 37 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 39 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 40 H 0.41 13.42 7.99 -92.71 -0.74 12.68 16 41 H 0.22 4.46 7.63 -2.91 -0.02 4.43 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 0.83 8.06 -2.38 -0.02 0.81 16 48 H 0.07 0.59 7.44 -2.39 -0.02 0.57 16 49 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -79.45 400.85 3.91 -75.54 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.19 Total: 21.05 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 6.74 Total: 19.13 kcal Atomic # 7 Polarization: -133.72 SS G_CDS: -4.98 Total: -138.70 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.07 Total: -26.90 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -79.45 3.91 -75.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966597321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.511 kcal (2) G-P(sol) polarization free energy of solvation -79.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.69 seconds