Wall clock time and date at job start Wed Apr 1 2020 00:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.44684 * 2 1 4 4 C 1.53030 * 109.48764 * 240.04875 * 2 1 3 5 5 C 1.53198 * 109.33862 * 178.64601 * 4 2 1 6 6 N 1.46920 * 108.77555 * 54.61856 * 5 4 2 7 7 C 1.36936 * 120.63016 * 126.41489 * 6 5 4 8 8 H 1.08005 * 120.00323 * 331.80533 * 7 6 5 9 9 C 1.38814 * 120.00378 * 151.81401 * 7 6 5 10 10 N 1.31628 * 119.99629 * 343.07497 * 9 7 6 11 11 Si 1.86798 * 120.00342 * 163.07968 * 9 7 6 12 12 H 1.48502 * 109.47044 * 90.00079 * 11 9 7 13 13 H 1.48496 * 109.46857 * 209.99452 * 11 9 7 14 14 H 1.48492 * 109.47189 * 329.99502 * 11 9 7 15 15 C 1.46922 * 118.74228 * 306.39419 * 6 5 4 16 16 C 1.53044 * 109.45770 * 119.95995 * 2 1 3 17 17 H 1.08994 * 109.49882 * 301.33916 * 16 2 1 18 18 N 1.46503 * 109.49695 * 61.40787 * 16 2 1 19 19 C 1.34771 * 119.99969 * 204.93018 * 18 16 2 20 20 O 1.21560 * 120.00214 * 0.02562 * 19 18 16 21 21 C 1.47876 * 120.00065 * 179.97438 * 19 18 16 22 22 N 1.34548 * 126.04322 * 359.69514 * 21 19 18 23 23 C 1.30875 * 107.25996 * 179.88973 * 22 21 19 24 24 N 1.34580 * 107.62867 * 0.36765 * 23 22 21 25 25 C 1.46502 * 125.74585 * 179.80282 * 24 23 22 26 26 C 1.52991 * 109.47311 * 74.98255 * 25 24 23 27 27 C 1.53004 * 109.46762 * 194.98168 * 25 24 23 28 28 C 1.53001 * 109.47291 * 314.98021 * 25 24 23 29 29 N 1.28846 * 108.50555 * 359.76480 * 24 23 22 30 30 H 1.08999 * 109.47303 * 300.03466 * 1 2 3 31 31 H 1.08997 * 109.47327 * 60.04126 * 1 2 3 32 32 H 1.09009 * 109.46802 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.50048 * 58.67639 * 4 2 1 34 34 H 1.09002 * 109.49963 * 298.61231 * 4 2 1 35 35 H 1.09004 * 109.58526 * 294.83040 * 5 4 2 36 36 H 1.09004 * 109.58784 * 174.40722 * 5 4 2 37 37 H 0.96997 * 119.99744 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58684 * 293.82033 * 15 6 5 39 39 H 1.08996 * 109.59222 * 173.39925 * 15 6 5 40 40 H 0.97003 * 119.99533 * 24.93041 * 18 16 2 41 41 H 1.08003 * 126.18463 * 180.12840 * 23 22 21 42 42 H 1.08999 * 109.47643 * 59.99750 * 26 25 24 43 43 H 1.09005 * 109.47508 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47253 * 300.00015 * 26 25 24 45 45 H 1.08993 * 109.47149 * 60.00155 * 27 25 24 46 46 H 1.09000 * 109.46808 * 179.97438 * 27 25 24 47 47 H 1.09002 * 109.47350 * 299.99722 * 27 25 24 48 48 H 1.09006 * 109.47036 * 59.99869 * 28 25 24 49 49 H 1.09000 * 109.47358 * 180.02562 * 28 25 24 50 50 H 1.09007 * 109.47191 * 300.00280 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7203 -1.2500 5 6 3.5721 -0.6887 -1.2637 6 7 4.0680 -1.2494 0.0006 7 6 4.9761 -2.2743 0.0007 8 1 5.0039 -2.9713 -0.8239 9 6 5.8610 -2.4176 1.0606 10 7 6.0657 -1.4139 1.8872 11 14 6.7612 -4.0346 1.3138 12 1 8.0458 -4.0079 0.5692 13 1 7.0319 -4.2291 2.7608 14 1 5.9217 -5.1523 0.8127 15 6 3.5714 -0.6892 1.2648 16 6 2.0398 -0.7206 1.2502 17 1 1.6572 -0.2206 2.1399 18 7 1.5795 -2.1114 1.2348 19 6 1.4523 -2.7919 2.3911 20 8 1.7189 -2.2516 3.4469 21 6 0.9871 -4.1955 2.3756 22 7 0.6537 -4.9070 1.2835 23 6 0.2989 -6.0993 1.6901 24 7 0.4054 -6.1209 3.0315 25 6 0.1012 -7.2639 3.8960 26 6 1.2216 -8.2998 3.7850 27 6 -0.0134 -6.7901 5.3463 28 6 -1.2223 -7.8954 3.4597 29 7 0.8208 -4.9672 3.4274 30 1 -0.3634 0.5144 0.8897 31 1 -0.3634 0.5132 -0.8903 32 1 -0.3633 -1.0278 0.0005 33 1 1.6584 -0.2200 -2.1398 34 1 1.6980 -1.7550 -1.2391 35 1 3.9155 0.3407 -1.3666 36 1 3.9424 -1.2847 -2.0979 37 1 6.6843 -1.5139 2.6276 38 1 3.9147 0.3402 1.3682 39 1 3.9412 -1.2853 2.0990 40 1 1.3664 -2.5424 0.3923 41 1 -0.0249 -6.9168 1.0630 42 1 2.1645 -7.8500 4.0958 43 1 0.9955 -9.1500 4.4285 44 1 1.3033 -8.6373 2.7517 45 1 -0.8116 -6.0521 5.4254 46 1 -0.2402 -7.6404 5.9894 47 1 0.9295 -6.3402 5.6572 48 1 -1.1407 -8.2328 2.4264 49 1 -1.4489 -8.7455 4.1031 50 1 -2.0206 -7.1573 3.5388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968330811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:33 Heat of formation + Delta-G solvation = 72.198699 kcal Electronic energy + Delta-G solvation = -30867.419234 eV Core-core repulsion = 26932.222116 eV Total energy + Delta-G solvation = -3935.197118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 14.94 seconds Orbital eigenvalues (eV) -43.34031 -39.38421 -37.67065 -37.11622 -34.05019 -32.92955 -32.25072 -30.99005 -30.82264 -29.07500 -27.93672 -27.78723 -27.24482 -24.62672 -23.80378 -22.91707 -22.01801 -20.99423 -20.37655 -20.05925 -18.53035 -17.75399 -16.66001 -16.47395 -16.44677 -15.37347 -14.87319 -14.63544 -14.53861 -14.42380 -13.94877 -13.86457 -13.63887 -13.42867 -13.13749 -13.08778 -12.91876 -12.73978 -12.68113 -12.48721 -12.20901 -12.01321 -11.85496 -11.68849 -11.48629 -11.31291 -11.29546 -10.99590 -10.84023 -10.64483 -10.41908 -10.26145 -10.20534 -10.14998 -9.83631 -9.67168 -9.48634 -9.39232 -9.32931 -8.36808 -8.24703 -6.54346 -5.67801 -3.09812 1.68476 2.17116 2.37719 3.42895 3.50365 3.52083 3.57334 3.95126 4.04008 4.26274 4.34232 4.37158 4.58456 4.78005 4.98486 5.02705 5.15456 5.19025 5.27749 5.31816 5.33740 5.36009 5.40540 5.44458 5.51762 5.52219 5.66147 5.74006 5.92221 5.99317 6.03161 6.10920 6.22831 6.25437 6.38594 6.46170 6.50374 6.53819 6.61350 6.67199 6.76160 6.84898 6.98516 7.10385 7.45734 7.76328 7.90166 8.06336 8.36646 8.56548 8.86050 9.31263 9.95626 10.51278 11.40351 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.004441 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.819001 B = 6302.781958 C = 7874.770908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.062 0.938 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.078 0.922 18 N -0.675 5.675 19 C 0.612 3.388 20 O -0.528 6.528 21 C 0.153 3.847 22 N -0.480 5.480 23 C 0.182 3.818 24 N -0.297 5.297 25 C 0.168 3.832 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.158 4.158 29 N -0.252 5.252 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.053 0.947 37 H 0.253 0.747 38 H 0.027 0.973 39 H 0.097 0.903 40 H 0.405 0.595 41 H 0.218 0.782 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.042 -11.669 0.539 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.170 4.170 5 C 0.017 3.983 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.725 3.275 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.208 1.208 15 C 0.033 3.967 16 C 0.020 3.980 17 H 0.096 0.904 18 N -0.326 5.326 19 C 0.392 3.608 20 O -0.402 6.402 21 C -0.127 4.127 22 N -0.205 5.205 23 C -0.113 4.113 24 N -0.094 5.094 25 C 0.086 3.914 26 C -0.219 4.219 27 C -0.206 4.206 28 C -0.216 4.216 29 N -0.090 5.090 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.115 0.885 40 H 0.241 0.759 41 H 0.234 0.766 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.571 -10.893 1.759 19.909 hybrid contribution 0.413 -1.520 -0.364 1.616 sum -16.158 -12.413 1.395 20.423 Atomic orbital electron populations 1.21858 0.95983 1.01519 1.00883 1.21301 0.94635 0.99812 0.95418 0.90314 1.22094 0.99194 0.99682 0.96009 1.20928 0.90725 0.96442 0.90214 1.43955 1.48223 1.39567 0.99179 1.19057 1.09445 1.02860 1.06489 0.91983 1.24973 0.97256 0.97048 0.99925 1.69992 1.37310 1.28895 1.18022 0.86417 0.79638 0.84352 0.77127 1.21423 1.21645 1.20765 1.21210 0.86538 0.97858 0.91060 1.21881 0.99068 0.79858 0.97153 0.90431 1.45523 1.65432 1.13726 1.07967 1.16205 0.78142 0.81614 0.84793 1.90795 1.50496 1.68001 1.30905 1.23981 1.05821 0.97881 0.85054 1.71291 1.17104 1.02709 1.29422 1.26244 1.02824 0.98128 0.84132 1.47721 1.44854 1.09769 1.07064 1.21092 0.96608 0.82539 0.91199 1.22274 0.98054 0.98069 1.03540 1.21986 1.04656 1.02077 0.91855 1.22244 0.94805 1.01733 1.02854 1.74291 1.15827 0.92608 1.26288 0.93126 0.93145 0.92907 0.92773 0.92456 0.96437 0.92832 0.93681 0.95476 0.88528 0.75893 0.76587 0.91098 0.89754 0.91340 0.91317 0.90519 0.90413 0.91176 0.89511 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.05 37.16 0.34 -1.68 16 2 C -0.09 -1.53 2.48 -90.58 -0.22 -1.76 16 3 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.13 -2.19 5.20 -26.61 -0.14 -2.33 16 5 C 0.14 2.97 6.52 -3.71 -0.02 2.94 16 6 N -0.59 -14.78 2.91 -172.32 -0.50 -15.29 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 8 H 0.06 1.73 7.89 -52.48 -0.41 1.31 16 9 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -27.37 11.20 55.49 0.62 -26.75 16 11 Si 0.89 23.10 29.59 -169.99 -5.03 18.07 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 14 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 15 C 0.16 3.99 4.90 -3.71 -0.02 3.97 16 16 C 0.13 2.55 2.24 -67.80 -0.15 2.40 16 17 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 18 N -0.68 -13.64 4.25 -54.62 -0.23 -13.87 16 19 C 0.61 13.49 7.80 -12.32 -0.10 13.40 16 20 O -0.53 -13.23 16.75 5.31 0.09 -13.14 16 21 C 0.15 3.01 7.96 -156.35 -1.24 1.77 16 22 N -0.48 -8.17 11.09 -12.36 -0.14 -8.31 16 23 C 0.18 2.32 11.71 -90.48 -1.06 1.26 16 24 N -0.30 -3.93 3.17 -49.84 -0.16 -4.09 16 25 C 0.17 1.47 1.23 -131.82 -0.16 1.30 16 26 C -0.16 -1.22 8.72 37.15 0.32 -0.89 16 27 C -0.15 -1.33 8.04 37.16 0.30 -1.03 16 28 C -0.16 -0.86 8.28 37.16 0.31 -0.55 16 29 N -0.25 -4.55 11.09 32.08 0.36 -4.20 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.75 7.54 -51.92 -0.39 0.36 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.99 6.41 -51.93 -0.33 0.65 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 37 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 2.85 6.06 -51.93 -0.31 2.53 16 40 H 0.40 7.77 6.35 -40.82 -0.26 7.51 16 41 H 0.22 1.62 7.53 -52.48 -0.39 1.23 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.88 8.02 -51.93 -0.42 0.47 16 48 H 0.07 0.29 7.34 -51.93 -0.38 -0.09 16 49 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -35.85 396.79 -9.44 -45.29 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.34 Total: 4.52 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -2.08 Total: 11.78 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.05 Total: -72.49 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.03 Total: 18.07 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.85 -9.44 -45.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968330811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.488 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.94 seconds