Wall clock time and date at job start Wed Apr 1 2020 00:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.44686 * 2 1 4 4 C 1.53036 * 109.46269 * 119.96636 * 2 1 3 5 5 C 1.53189 * 109.31463 * 181.38893 * 4 2 1 6 6 N 1.46921 * 108.77587 * 305.36375 * 5 4 2 7 7 C 1.36934 * 120.63047 * 233.63119 * 6 5 4 8 8 H 1.08003 * 120.00338 * 27.67480 * 7 6 5 9 9 C 1.38822 * 120.00137 * 207.67903 * 7 6 5 10 10 N 1.31615 * 119.99603 * 17.34873 * 9 7 6 11 11 Si 1.86803 * 119.99991 * 197.35289 * 9 7 6 12 12 H 1.48502 * 109.46953 * 59.99694 * 11 9 7 13 13 H 1.48493 * 109.46877 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46933 * 299.99575 * 11 9 7 15 15 C 1.46927 * 118.74068 * 53.61137 * 6 5 4 16 16 C 1.53043 * 109.46331 * 240.03738 * 2 1 3 17 17 H 1.09001 * 109.49397 * 298.56514 * 16 2 1 18 18 N 1.46502 * 109.49878 * 58.62934 * 16 2 1 19 19 C 1.34777 * 119.99827 * 204.93815 * 18 16 2 20 20 O 1.21555 * 120.00048 * 0.02562 * 19 18 16 21 21 C 1.47872 * 119.99928 * 179.97438 * 19 18 16 22 22 N 1.34547 * 126.04414 * 0.02562 * 21 19 18 23 23 C 1.30873 * 107.26460 * 180.02562 * 22 21 19 24 24 N 1.34581 * 107.62905 * 359.97438 * 23 22 21 25 25 C 1.46492 * 125.75357 * 179.97438 * 24 23 22 26 26 C 1.53006 * 109.47188 * 75.00299 * 25 24 23 27 27 C 1.52999 * 109.47635 * 195.00740 * 25 24 23 28 28 C 1.53004 * 109.47127 * 315.00509 * 25 24 23 29 29 N 1.28856 * 108.49861 * 359.73694 * 24 23 22 30 30 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47388 * 299.96273 * 1 2 3 32 32 H 1.08999 * 109.46959 * 59.96909 * 1 2 3 33 33 H 1.09008 * 109.49702 * 301.33765 * 4 2 1 34 34 H 1.08994 * 109.50016 * 61.43210 * 4 2 1 35 35 H 1.08998 * 109.58963 * 65.15156 * 5 4 2 36 36 H 1.09002 * 109.58541 * 185.43137 * 5 4 2 37 37 H 0.97006 * 119.99566 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.58766 * 186.60614 * 15 6 5 39 39 H 1.09002 * 109.59065 * 66.17514 * 15 6 5 40 40 H 0.96995 * 119.99996 * 24.93189 * 18 16 2 41 41 H 1.08000 * 126.18830 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.46567 * 60.00258 * 26 25 24 43 43 H 1.08999 * 109.47188 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46843 * 300.00260 * 26 25 24 45 45 H 1.08997 * 109.47204 * 59.99338 * 27 25 24 46 46 H 1.08995 * 109.47252 * 180.02562 * 27 25 24 47 47 H 1.09010 * 109.46565 * 299.99870 * 27 25 24 48 48 H 1.09003 * 109.46871 * 60.00135 * 28 25 24 49 49 H 1.08995 * 109.47109 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47248 * 299.99987 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5713 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9758 -2.2737 0.0000 8 1 5.0085 -2.9662 0.8283 9 6 5.8543 -2.4230 -1.0645 10 7 6.0605 -1.4212 -1.8928 11 14 6.7435 -4.0456 -1.3212 12 1 5.7481 -5.1290 -1.5228 13 1 7.6168 -3.9473 -2.5182 14 1 7.5719 -4.3503 -0.1271 15 6 3.5715 -0.6884 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6979 -1.7556 -1.2384 18 7 1.5250 -0.0490 -2.4460 19 6 1.3978 -0.7325 -3.6006 20 8 1.7099 -1.9063 -3.6496 21 6 0.8776 -0.0548 -4.8075 22 7 0.4971 1.2331 -4.8903 23 6 0.1001 1.4426 -6.1196 24 7 0.2360 0.2862 -6.7945 25 6 -0.0946 0.0748 -8.2059 26 6 0.9805 0.7190 -9.0835 27 6 -0.1578 -1.4261 -8.4958 28 6 -1.4519 0.7110 -8.5126 29 7 0.7106 -0.6026 -5.9912 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5132 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6572 -0.2207 2.1399 34 1 1.6979 -1.7555 1.2383 35 1 3.9143 0.3410 1.3673 36 1 3.9416 -1.2823 2.0999 37 1 6.6741 -1.5256 -2.6369 38 1 3.9418 -1.2843 -2.0984 39 1 3.9143 0.3411 -1.3674 40 1 1.2756 0.8875 -2.4068 41 1 -0.2696 2.3749 -6.5202 42 1 1.9474 0.2657 -8.8650 43 1 0.7348 0.5614 -10.1337 44 1 1.0254 1.7883 -8.8770 45 1 -0.9237 -1.8850 -7.8706 46 1 -0.4033 -1.5833 -9.5460 47 1 0.8092 -1.8793 -8.2773 48 1 -1.4069 1.7804 -8.3061 49 1 -1.6977 0.5542 -9.5628 50 1 -2.2178 0.2522 -7.8874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968330813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:59 Heat of formation + Delta-G solvation = 70.469364 kcal Electronic energy + Delta-G solvation = -30083.143381 eV Core-core repulsion = 26147.871273 eV Total energy + Delta-G solvation = -3935.272107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.21 seconds Orbital eigenvalues (eV) -43.48870 -39.36065 -37.73565 -37.22797 -34.27011 -33.15007 -32.48865 -31.06465 -30.84530 -28.83906 -28.02367 -27.86592 -27.27519 -24.70206 -23.87013 -23.05707 -21.95661 -20.93819 -20.24869 -19.95485 -19.31233 -17.68128 -16.73231 -16.57024 -16.51506 -15.68781 -14.96228 -14.70478 -14.61339 -14.52773 -13.92645 -13.82552 -13.64018 -13.44060 -13.23831 -13.18028 -12.92950 -12.86252 -12.75168 -12.32062 -12.29028 -12.13419 -11.91794 -11.77781 -11.56320 -11.49675 -11.40696 -10.81997 -10.62588 -10.55512 -10.40607 -10.37904 -10.34895 -10.10068 -9.95542 -9.82874 -9.54146 -9.49011 -9.38481 -8.41958 -8.33467 -6.57279 -5.67010 -3.10028 1.54478 2.04222 2.21103 3.39534 3.49464 3.55249 3.57887 3.77540 3.92687 4.16314 4.19488 4.28256 4.61004 4.64869 4.88873 4.90514 5.05493 5.10284 5.20180 5.24350 5.28000 5.33308 5.36426 5.43634 5.49317 5.61868 5.64418 5.68612 5.85223 6.00812 6.07100 6.12250 6.12778 6.20817 6.33308 6.35690 6.48358 6.50888 6.55098 6.62576 6.82723 6.83841 7.03082 7.05689 7.38772 7.81854 7.87893 7.92840 8.19821 8.56214 8.69768 9.31291 9.95710 10.50638 11.40860 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003320 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.460703 B = 8431.775228 C =10062.483061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.902 3.098 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.166 3.834 16 C 0.126 3.874 17 H 0.084 0.916 18 N -0.696 5.696 19 C 0.609 3.391 20 O -0.512 6.512 21 C 0.149 3.851 22 N -0.484 5.484 23 C 0.184 3.816 24 N -0.296 5.296 25 C 0.167 3.833 26 C -0.161 4.161 27 C -0.149 4.149 28 C -0.159 4.159 29 N -0.249 5.249 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.402 0.598 41 H 0.219 0.781 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 9.240 -13.139 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.210 1.210 15 C 0.039 3.961 16 C 0.021 3.979 17 H 0.102 0.898 18 N -0.348 5.348 19 C 0.390 3.610 20 O -0.384 6.384 21 C -0.132 4.132 22 N -0.210 5.210 23 C -0.112 4.112 24 N -0.093 5.093 25 C 0.085 3.915 26 C -0.219 4.219 27 C -0.207 4.207 28 C -0.217 4.217 29 N -0.087 5.087 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.236 0.764 41 H 0.235 0.765 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.948 7.911 -13.147 22.862 hybrid contribution 0.233 0.074 -0.562 0.613 sum -16.715 7.985 -13.710 23.046 Atomic orbital electron populations 1.21854 0.95978 1.01532 1.00849 1.21298 0.94633 0.99759 0.95360 0.91341 1.22073 0.98931 1.00047 0.95422 1.20957 0.90833 0.96485 0.90142 1.43943 1.48100 1.39830 0.99155 1.19097 1.09810 1.03257 1.06448 0.91649 1.25027 0.97183 0.97352 0.99683 1.70011 1.37440 1.29081 1.17677 0.86380 0.79163 0.84138 0.77164 1.20859 1.21690 1.20957 1.21113 0.86358 0.97599 0.91045 1.22072 0.98425 0.96381 0.81056 0.89814 1.45744 1.64950 1.14541 1.09531 1.16264 0.78457 0.85486 0.80841 1.90866 1.48821 1.15125 1.83571 1.24004 1.05876 0.89114 0.94160 1.71274 1.16851 1.15169 1.17667 1.26252 1.02612 0.93819 0.88499 1.47759 1.43190 1.07408 1.10927 1.21125 0.96461 0.99303 0.74591 1.22272 0.98526 1.01326 0.99746 1.21999 1.04820 0.91546 1.02327 1.22250 0.94302 1.01380 1.03762 1.74325 1.14800 1.18382 1.01158 0.92984 0.93138 0.93050 0.92585 0.92082 0.96412 0.92631 0.93655 0.88675 0.96340 0.76383 0.76474 0.91082 0.89686 0.91359 0.91270 0.90423 0.90366 0.91173 0.89422 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.02 37.16 0.34 -1.72 16 2 C -0.09 -1.55 2.27 -90.58 -0.21 -1.76 16 3 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 4 C -0.12 -2.19 5.36 -26.61 -0.14 -2.33 16 5 C 0.14 3.03 6.51 -3.72 -0.02 3.01 16 6 N -0.59 -15.38 2.99 -172.32 -0.52 -15.89 16 7 C -0.26 -7.39 9.59 -15.06 -0.14 -7.54 16 8 H 0.07 1.83 7.89 -52.48 -0.41 1.42 16 9 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 10 N -0.90 -27.65 11.19 55.49 0.62 -27.03 16 11 Si 0.90 23.17 29.59 -169.99 -5.03 18.14 16 12 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 C 0.17 4.23 4.89 -3.71 -0.02 4.21 16 16 C 0.13 2.60 2.06 -67.81 -0.14 2.46 16 17 H 0.08 1.95 7.58 -51.93 -0.39 1.55 16 18 N -0.70 -13.06 4.37 -54.62 -0.24 -13.30 16 19 C 0.61 12.65 7.80 -12.32 -0.10 12.55 16 20 O -0.51 -12.74 16.75 5.32 0.09 -12.65 16 21 C 0.15 2.66 7.96 -156.36 -1.24 1.41 16 22 N -0.48 -7.16 11.09 -12.37 -0.14 -7.30 16 23 C 0.18 1.98 11.71 -90.48 -1.06 0.92 16 24 N -0.30 -3.44 3.16 -49.84 -0.16 -3.60 16 25 C 0.17 1.25 1.23 -131.82 -0.16 1.08 16 26 C -0.16 -0.96 8.72 37.16 0.32 -0.64 16 27 C -0.15 -1.20 8.05 37.16 0.30 -0.90 16 28 C -0.16 -0.69 8.28 37.16 0.31 -0.38 16 29 N -0.25 -4.12 11.09 32.07 0.36 -3.76 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.70 7.36 -51.93 -0.38 0.31 16 33 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 37 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.10 2.86 6.04 -51.93 -0.31 2.54 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.40 6.56 8.01 -40.82 -0.33 6.23 16 41 H 0.22 1.21 7.53 -52.49 -0.40 0.82 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.81 8.02 -51.92 -0.42 0.40 16 48 H 0.07 0.21 7.34 -51.93 -0.38 -0.17 16 49 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -36.59 399.91 -9.53 -46.12 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.49 Total: 2.75 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.06 Total: 10.50 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -0.07 Total: -70.88 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.03 Total: 18.14 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.59 -9.53 -46.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968330813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.587 kcal (2) G-P(sol) polarization free energy of solvation -36.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.21 seconds