Wall clock time and date at job start Wed Apr 1 2020 00:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.44686 * 2 1 4 4 C 1.53036 * 109.46269 * 119.96636 * 2 1 3 5 5 C 1.53189 * 109.31463 * 181.38893 * 4 2 1 6 6 N 1.46921 * 108.77587 * 305.36375 * 5 4 2 7 7 C 1.36934 * 120.63047 * 233.63119 * 6 5 4 8 8 H 1.08003 * 120.00338 * 27.67480 * 7 6 5 9 9 C 1.38822 * 120.00137 * 207.67903 * 7 6 5 10 10 N 1.31615 * 119.99603 * 17.34873 * 9 7 6 11 11 Si 1.86803 * 119.99991 * 197.35289 * 9 7 6 12 12 H 1.48502 * 109.46953 * 59.99694 * 11 9 7 13 13 H 1.48493 * 109.46877 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46933 * 299.99575 * 11 9 7 15 15 C 1.46927 * 118.74068 * 53.61137 * 6 5 4 16 16 C 1.53043 * 109.46331 * 240.03738 * 2 1 3 17 17 H 1.09001 * 109.49397 * 298.56514 * 16 2 1 18 18 N 1.46502 * 109.49878 * 58.62934 * 16 2 1 19 19 C 1.34777 * 119.99827 * 204.93815 * 18 16 2 20 20 O 1.21555 * 120.00048 * 0.02562 * 19 18 16 21 21 C 1.47872 * 119.99928 * 179.97438 * 19 18 16 22 22 N 1.34547 * 126.04414 * 0.02562 * 21 19 18 23 23 C 1.30873 * 107.26460 * 180.02562 * 22 21 19 24 24 N 1.34581 * 107.62905 * 359.97438 * 23 22 21 25 25 C 1.46492 * 125.75357 * 179.97438 * 24 23 22 26 26 C 1.53006 * 109.47188 * 75.00299 * 25 24 23 27 27 C 1.52999 * 109.47635 * 195.00740 * 25 24 23 28 28 C 1.53004 * 109.47127 * 315.00509 * 25 24 23 29 29 N 1.28856 * 108.49861 * 359.73694 * 24 23 22 30 30 H 1.09000 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47388 * 299.96273 * 1 2 3 32 32 H 1.08999 * 109.46959 * 59.96909 * 1 2 3 33 33 H 1.09008 * 109.49702 * 301.33765 * 4 2 1 34 34 H 1.08994 * 109.50016 * 61.43210 * 4 2 1 35 35 H 1.08998 * 109.58963 * 65.15156 * 5 4 2 36 36 H 1.09002 * 109.58541 * 185.43137 * 5 4 2 37 37 H 0.97006 * 119.99566 * 180.02562 * 10 9 7 38 38 H 1.08994 * 109.58766 * 186.60614 * 15 6 5 39 39 H 1.09002 * 109.59065 * 66.17514 * 15 6 5 40 40 H 0.96995 * 119.99996 * 24.93189 * 18 16 2 41 41 H 1.08000 * 126.18830 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.46567 * 60.00258 * 26 25 24 43 43 H 1.08999 * 109.47188 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46843 * 300.00260 * 26 25 24 45 45 H 1.08997 * 109.47204 * 59.99338 * 27 25 24 46 46 H 1.08995 * 109.47252 * 180.02562 * 27 25 24 47 47 H 1.09010 * 109.46565 * 299.99870 * 27 25 24 48 48 H 1.09003 * 109.46871 * 60.00135 * 28 25 24 49 49 H 1.08995 * 109.47109 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47248 * 299.99987 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2500 5 6 3.5713 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9758 -2.2737 0.0000 8 1 5.0085 -2.9662 0.8283 9 6 5.8543 -2.4230 -1.0645 10 7 6.0605 -1.4212 -1.8928 11 14 6.7435 -4.0456 -1.3212 12 1 5.7481 -5.1290 -1.5228 13 1 7.6168 -3.9473 -2.5182 14 1 7.5719 -4.3503 -0.1271 15 6 3.5715 -0.6884 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6979 -1.7556 -1.2384 18 7 1.5250 -0.0490 -2.4460 19 6 1.3978 -0.7325 -3.6006 20 8 1.7099 -1.9063 -3.6496 21 6 0.8776 -0.0548 -4.8075 22 7 0.4971 1.2331 -4.8903 23 6 0.1001 1.4426 -6.1196 24 7 0.2360 0.2862 -6.7945 25 6 -0.0946 0.0748 -8.2059 26 6 0.9805 0.7190 -9.0835 27 6 -0.1578 -1.4261 -8.4958 28 6 -1.4519 0.7110 -8.5126 29 7 0.7106 -0.6026 -5.9912 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5132 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6572 -0.2207 2.1399 34 1 1.6979 -1.7555 1.2383 35 1 3.9143 0.3410 1.3673 36 1 3.9416 -1.2823 2.0999 37 1 6.6741 -1.5256 -2.6369 38 1 3.9418 -1.2843 -2.0984 39 1 3.9143 0.3411 -1.3674 40 1 1.2756 0.8875 -2.4068 41 1 -0.2696 2.3749 -6.5202 42 1 1.9474 0.2657 -8.8650 43 1 0.7348 0.5614 -10.1337 44 1 1.0254 1.7883 -8.8770 45 1 -0.9237 -1.8850 -7.8706 46 1 -0.4033 -1.5833 -9.5460 47 1 0.8092 -1.8793 -8.2773 48 1 -1.4069 1.7804 -8.3061 49 1 -1.6977 0.5542 -9.5628 50 1 -2.2178 0.2522 -7.8874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968330813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:58 Heat of formation + Delta-G solvation = 45.810718 kcal Electronic energy + Delta-G solvation = -30084.212660 eV Core-core repulsion = 26147.871273 eV Total energy + Delta-G solvation = -3936.341387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -44.54401 -41.00976 -39.18261 -38.20190 -36.14436 -34.79440 -33.61008 -32.83571 -32.13258 -30.51714 -29.01240 -28.47837 -28.40550 -26.26148 -25.58956 -24.01571 -23.53045 -22.64745 -21.55711 -21.10087 -20.90986 -18.89395 -18.74793 -17.61504 -17.50111 -17.30412 -16.81932 -16.00548 -15.90602 -15.58169 -15.28825 -15.23423 -15.03051 -15.00693 -14.81686 -14.44287 -14.10628 -13.81076 -13.58636 -13.32611 -13.28266 -13.24662 -13.06393 -13.02651 -12.78365 -12.71643 -12.59137 -12.41222 -12.35851 -12.20706 -12.01215 -11.92375 -11.64245 -11.61716 -11.48487 -11.42761 -11.22714 -11.16295 -10.61250 -10.54972 -10.13054 -8.70946 -7.90166 -5.35731 0.32609 1.11076 1.17377 1.38696 1.45934 1.49966 2.01327 2.28637 2.48183 3.07111 3.24566 3.29305 3.65088 3.70254 3.76459 3.78522 3.82815 3.91317 4.00242 4.16195 4.46187 4.52443 4.55977 4.56931 4.59886 4.66308 4.67528 4.74528 4.77308 4.79348 4.90306 4.92732 4.98189 5.08977 5.12296 5.15453 5.17753 5.19267 5.21440 5.25582 5.35831 5.39650 5.45005 5.52765 5.60560 5.70305 5.75370 6.33110 6.43126 6.98741 7.09469 7.16539 7.83651 8.33401 9.14684 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003320 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.460703 B = 8431.775228 C =10062.483061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.264 4.264 8 H 0.071 0.929 9 C -0.052 4.052 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.286 1.286 13 H -0.295 1.295 14 H -0.264 1.264 15 C 0.179 3.821 16 C 0.141 3.859 17 H 0.054 0.946 18 N -0.681 5.681 19 C 0.604 3.396 20 O -0.568 6.568 21 C 0.118 3.882 22 N -0.500 5.500 23 C 0.202 3.798 24 N -0.288 5.288 25 C 0.156 3.844 26 C -0.157 4.157 27 C -0.150 4.150 28 C -0.153 4.153 29 N -0.277 5.277 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.059 0.941 37 H 0.246 0.754 38 H 0.042 0.958 39 H -0.001 1.001 40 H 0.416 0.584 41 H 0.277 0.723 42 H 0.039 0.961 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.112 0.888 47 H 0.044 0.956 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 11.621 -13.738 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.395 4.395 8 H 0.089 0.911 9 C -0.248 4.248 10 N -0.577 5.577 11 Si 0.790 3.210 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.189 1.189 15 C 0.052 3.948 16 C 0.035 3.965 17 H 0.072 0.928 18 N -0.333 5.333 19 C 0.387 3.613 20 O -0.445 6.445 21 C -0.161 4.161 22 N -0.226 5.226 23 C -0.092 4.092 24 N -0.085 5.085 25 C 0.076 3.924 26 C -0.215 4.215 27 C -0.208 4.208 28 C -0.210 4.210 29 N -0.117 5.117 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.292 0.708 42 H 0.058 0.942 43 H 0.134 0.866 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.131 0.869 47 H 0.063 0.937 48 H 0.112 0.888 49 H 0.133 0.867 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.729 10.338 -13.719 26.160 hybrid contribution 1.047 -0.612 -0.489 1.307 sum -18.682 9.726 -14.208 25.407 Atomic orbital electron populations 1.21767 0.93008 1.01687 1.02755 1.21278 0.96958 0.99448 0.92644 0.90175 1.21974 0.95705 1.00310 0.97379 1.21196 0.93564 0.96306 0.87891 1.44220 1.48147 1.39872 1.00926 1.19492 1.09569 1.04030 1.06364 0.91117 1.25820 0.98707 1.00349 0.99890 1.70180 1.38465 1.30926 1.18159 0.85412 0.78017 0.80154 0.77407 1.21223 1.22145 1.18860 1.20761 0.89482 0.95039 0.89499 1.21659 0.95074 0.95968 0.83817 0.92819 1.45553 1.64047 1.14996 1.08698 1.16741 0.77472 0.85028 0.82034 1.90816 1.51353 1.17626 1.84669 1.23363 1.08590 0.90585 0.93582 1.71194 1.17822 1.13506 1.20109 1.27281 0.99972 0.94919 0.87030 1.48218 1.41443 1.06914 1.11895 1.21693 0.99089 0.99211 0.72456 1.22303 0.96302 1.01783 1.01103 1.22024 1.02352 0.92201 1.04176 1.22292 0.91230 1.02273 1.05250 1.74239 1.15466 1.20520 1.01496 0.93738 0.89917 0.92449 0.88162 0.92952 0.95942 0.92273 0.94525 0.93991 0.98258 0.74680 0.70806 0.94184 0.86594 0.89685 0.92927 0.86942 0.93704 0.88812 0.86662 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.02 71.98 0.65 -2.81 16 2 C -0.08 -2.75 2.27 -10.77 -0.02 -2.77 16 3 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 4 C -0.11 -3.78 5.36 30.67 0.16 -3.62 16 5 C 0.14 5.71 6.51 86.36 0.56 6.27 16 6 N -0.61 -32.91 2.99 -699.10 -2.09 -35.00 16 7 C -0.26 -15.74 9.59 84.04 0.81 -14.94 16 8 H 0.07 4.04 7.89 -2.91 -0.02 4.01 16 9 C -0.05 -3.20 4.91 84.87 0.42 -2.78 16 10 N -0.93 -60.56 11.19 21.65 0.24 -60.32 16 11 Si 0.96 49.52 29.59 68.60 2.03 51.55 16 12 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 14 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 15 C 0.18 9.69 4.89 86.36 0.42 10.11 16 16 C 0.14 6.06 2.06 45.07 0.09 6.15 16 17 H 0.05 2.65 7.58 -2.39 -0.02 2.63 16 18 N -0.68 -26.65 4.37 -444.99 -1.94 -28.60 16 19 C 0.60 26.82 7.80 86.79 0.68 27.49 16 20 O -0.57 -30.83 16.75 -3.89 -0.07 -30.89 16 21 C 0.12 4.37 7.96 137.13 1.09 5.46 16 22 N -0.50 -14.39 11.09 -193.04 -2.14 -16.53 16 23 C 0.20 3.85 11.71 180.30 2.11 5.96 16 24 N -0.29 -6.41 3.16 -311.59 -0.99 -7.39 16 25 C 0.16 1.99 1.23 3.61 0.00 2.00 16 26 C -0.16 -1.48 8.72 71.98 0.63 -0.85 16 27 C -0.15 -2.36 8.05 71.98 0.58 -1.79 16 28 C -0.15 -0.70 8.28 71.98 0.60 -0.10 16 29 N -0.28 -9.54 11.09 -52.44 -0.58 -10.12 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.41 7.36 -2.39 -0.02 1.39 16 33 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 2.42 7.94 -2.39 -0.02 2.40 16 37 H 0.25 15.66 8.31 -92.70 -0.77 14.88 16 38 H 0.04 2.71 6.04 -2.39 -0.01 2.70 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.42 13.70 8.01 -92.71 -0.74 12.96 16 41 H 0.28 1.56 7.53 -2.91 -0.02 1.54 16 42 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.04 1.00 8.02 -2.38 -0.02 0.98 16 48 H 0.09 0.02 7.34 -2.39 -0.02 0.01 16 49 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 50 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -89.67 399.91 3.42 -86.25 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.18 Total: 17.26 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: 8.78 Total: 33.79 kcal Atomic # 7 Polarization: -150.46 SS G_CDS: -7.50 Total: -157.96 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.07 Total: -30.89 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.03 Total: 51.55 kcal Total: -89.67 3.42 -86.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968330813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.062 kcal (2) G-P(sol) polarization free energy of solvation -89.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds