Wall clock time and date at job start Wed Apr 1 2020 00:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08998 * 109.49511 * 61.43649 * 16 2 1 18 18 N 1.46500 * 109.52372 * 301.35896 * 16 2 1 19 19 C 1.34775 * 119.99842 * 155.15123 * 18 16 2 20 20 O 1.21554 * 119.99999 * 359.97438 * 19 18 16 21 21 C 1.47866 * 119.99797 * 179.97438 * 19 18 16 22 22 N 1.34551 * 126.05146 * 0.02562 * 21 19 18 23 23 C 1.30865 * 107.26996 * 180.02562 * 22 21 19 24 24 N 1.34588 * 107.62909 * 0.02562 * 23 22 21 25 25 C 1.46494 * 125.74915 * 180.02562 * 24 23 22 26 26 C 1.52999 * 109.47614 * 74.99692 * 25 24 23 27 27 C 1.53000 * 109.46856 * 194.99613 * 25 24 23 28 28 C 1.52999 * 109.47288 * 314.99158 * 25 24 23 29 29 N 1.28854 * 108.49882 * 359.72422 * 24 23 22 30 30 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 31 31 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 32 32 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 34 34 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 35 35 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 36 36 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 39 39 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 40 40 H 0.97001 * 120.00100 * 335.14305 * 18 16 2 41 41 H 1.08011 * 126.18642 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.47230 * 59.99554 * 26 25 24 43 43 H 1.08995 * 109.47368 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.46488 * 299.99828 * 26 25 24 45 45 H 1.09000 * 109.47334 * 60.00271 * 27 25 24 46 46 H 1.09004 * 109.47272 * 179.97438 * 27 25 24 47 47 H 1.09002 * 109.47061 * 299.99415 * 27 25 24 48 48 H 1.09003 * 109.47060 * 60.00021 * 28 25 24 49 49 H 1.08999 * 109.47199 * 180.02562 * 28 25 24 50 50 H 1.08999 * 109.47012 * 300.00674 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6977 -1.7556 1.2384 18 7 1.5254 -0.0494 2.4464 19 6 1.4000 -0.7327 3.6013 20 8 1.7133 -1.9062 3.6502 21 6 0.8813 -0.0549 4.8087 22 7 0.4996 1.2326 4.8917 23 6 0.1057 1.4426 6.1219 24 7 0.2446 0.2867 6.7972 25 6 -0.0820 0.0762 8.2097 26 6 -1.6009 -0.0035 8.3757 27 6 0.5528 -1.2302 8.6906 28 6 0.4611 1.2422 9.0381 29 7 0.7073 -0.6051 5.9904 30 1 -0.3634 0.5144 0.8896 31 1 -0.3632 0.5133 -0.8904 32 1 -0.3634 -1.0277 0.0005 33 1 1.6593 -0.2219 -2.1447 34 1 1.6981 -1.7560 -1.2419 35 1 3.9144 0.3410 -1.3671 36 1 3.9439 -1.2830 -2.0984 37 1 6.6845 -1.5121 2.6270 38 1 3.9415 -1.2845 2.0986 39 1 3.9142 0.3409 1.3675 40 1 1.2751 0.8870 2.4072 41 1 -0.2640 2.3749 6.5228 42 1 -1.9878 -0.8342 7.7855 43 1 -1.8438 -0.1597 9.4266 44 1 -2.0530 0.9272 8.0330 45 1 1.6349 -1.1735 8.5725 46 1 0.3102 -1.3867 9.7417 47 1 0.1658 -2.0610 8.1005 48 1 0.0089 2.1730 8.6955 49 1 0.2185 1.0853 10.0891 50 1 1.5432 1.2989 8.9198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968330814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:37 Heat of formation + Delta-G solvation = 70.308040 kcal Electronic energy + Delta-G solvation = -30080.169148 eV Core-core repulsion = 26144.890045 eV Total energy + Delta-G solvation = -3935.279103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 14.25 seconds Orbital eigenvalues (eV) -43.48791 -39.35763 -37.73076 -37.22201 -34.26906 -33.14331 -32.48744 -31.06355 -30.84331 -28.84231 -28.02622 -27.86455 -27.27384 -24.70265 -23.86655 -23.05539 -21.95742 -20.93550 -20.24848 -19.95518 -19.31395 -17.68169 -16.73650 -16.56463 -16.51564 -15.68942 -14.92404 -14.80189 -14.60360 -14.46197 -13.96008 -13.81280 -13.63703 -13.43279 -13.22930 -13.17697 -12.97249 -12.81734 -12.76340 -12.32203 -12.29082 -12.13843 -11.92278 -11.77456 -11.56242 -11.49532 -11.40543 -10.82657 -10.62067 -10.55747 -10.41734 -10.37684 -10.34475 -10.08809 -9.95700 -9.83068 -9.53616 -9.49165 -9.38514 -8.41949 -8.34140 -6.56471 -5.67262 -3.10604 1.54410 2.04227 2.21039 3.39341 3.48431 3.55576 3.58367 3.77572 3.92744 4.16445 4.19362 4.28315 4.60770 4.64605 4.88149 4.91115 5.06078 5.08752 5.19465 5.25094 5.28201 5.34870 5.36480 5.43686 5.49226 5.61787 5.62719 5.68454 5.86536 6.00623 6.07055 6.12134 6.12749 6.20842 6.33274 6.35676 6.48375 6.50826 6.54954 6.62582 6.82679 6.83879 7.02990 7.05772 7.38740 7.81974 7.87866 7.92849 8.19758 8.56387 8.69680 9.31273 9.95555 10.50708 11.40725 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.003318 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.254436 B = 8435.648377 C =10068.693737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.256 4.256 8 H 0.066 0.934 9 C 0.006 3.994 10 N -0.898 5.898 11 Si 0.901 3.099 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.166 3.834 16 C 0.126 3.874 17 H 0.084 0.916 18 N -0.696 5.696 19 C 0.609 3.391 20 O -0.512 6.512 21 C 0.149 3.851 22 N -0.484 5.484 23 C 0.184 3.816 24 N -0.296 5.296 25 C 0.167 3.833 26 C -0.159 4.159 27 C -0.150 4.150 28 C -0.160 4.160 29 N -0.249 5.249 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.402 0.598 41 H 0.219 0.781 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.446 9.230 13.172 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.083 0.917 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.731 3.269 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.039 3.961 16 C 0.021 3.979 17 H 0.102 0.898 18 N -0.348 5.348 19 C 0.390 3.610 20 O -0.384 6.384 21 C -0.132 4.132 22 N -0.210 5.210 23 C -0.112 4.112 24 N -0.093 5.093 25 C 0.085 3.915 26 C -0.217 4.217 27 C -0.207 4.207 28 C -0.218 4.218 29 N -0.087 5.087 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.236 0.764 41 H 0.235 0.765 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.910 7.893 13.179 22.846 hybrid contribution 0.231 0.083 0.561 0.612 sum -16.679 7.976 13.740 23.034 Atomic orbital electron populations 1.21856 0.95988 1.01529 1.00845 1.21351 0.94618 0.99752 0.95332 0.91341 1.22123 0.98918 1.00040 0.95377 1.20963 0.90854 0.96484 0.90152 1.43947 1.48062 1.39878 0.99149 1.19121 1.09485 1.03103 1.06808 0.91658 1.25040 0.97176 0.97352 0.99698 1.70017 1.37187 1.29062 1.17950 0.86316 0.79426 0.83991 0.77155 1.21501 1.21561 1.20371 1.21105 0.86354 0.97601 0.91033 1.22061 0.98423 0.96379 0.81057 0.89818 1.45744 1.64957 1.14572 1.09495 1.16260 0.78464 0.85479 0.80836 1.90865 1.48773 1.15151 1.83597 1.24005 1.05860 0.89038 0.94254 1.71271 1.16806 1.15253 1.17631 1.26255 1.02643 0.93898 0.88385 1.47760 1.43442 1.07288 1.10798 1.21122 0.96823 0.98983 0.74547 1.22258 0.92073 1.03561 1.03817 1.22005 1.02098 0.95008 1.01632 1.22259 1.02617 0.96499 1.00436 1.74327 1.14983 1.18233 1.01119 0.93056 0.93139 0.92984 0.92544 0.92090 0.96412 0.92649 0.93710 0.88726 0.96331 0.76383 0.76470 0.91237 0.89688 0.91415 0.91111 0.90425 0.90457 0.91175 0.89416 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.02 37.16 0.34 -1.72 16 2 C -0.09 -1.55 2.27 -90.41 -0.21 -1.76 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.12 -2.19 5.39 -26.45 -0.14 -2.33 16 5 C 0.14 3.03 6.50 -3.71 -0.02 3.00 16 6 N -0.59 -15.38 2.99 -172.32 -0.52 -15.90 16 7 C -0.26 -7.36 9.58 -15.06 -0.14 -7.51 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 10 N -0.90 -27.65 11.20 55.49 0.62 -27.02 16 11 Si 0.90 23.15 29.59 -169.99 -5.03 18.12 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 15 C 0.17 4.24 4.88 -3.71 -0.02 4.22 16 16 C 0.13 2.60 2.06 -67.81 -0.14 2.46 16 17 H 0.08 1.94 7.58 -51.93 -0.39 1.55 16 18 N -0.70 -13.05 4.37 -54.63 -0.24 -13.29 16 19 C 0.61 12.64 7.80 -12.32 -0.10 12.55 16 20 O -0.51 -12.73 16.75 5.32 0.09 -12.64 16 21 C 0.15 2.66 7.96 -156.35 -1.24 1.41 16 22 N -0.48 -7.16 11.09 -12.36 -0.14 -7.30 16 23 C 0.18 1.98 11.71 -90.48 -1.06 0.92 16 24 N -0.30 -3.45 3.16 -49.84 -0.16 -3.60 16 25 C 0.17 1.25 1.22 -131.82 -0.16 1.08 16 26 C -0.16 -0.85 8.72 37.16 0.32 -0.53 16 27 C -0.15 -1.24 8.05 37.16 0.30 -0.94 16 28 C -0.16 -0.76 8.28 37.16 0.31 -0.45 16 29 N -0.25 -4.12 11.09 32.07 0.36 -3.76 16 30 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.09 2.84 6.06 -51.93 -0.31 2.53 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.40 6.56 8.01 -40.82 -0.33 6.23 16 41 H 0.22 1.21 7.53 -52.48 -0.39 0.82 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 48 H 0.07 0.23 7.34 -51.93 -0.38 -0.15 16 49 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -36.61 399.96 -9.53 -46.14 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.49 Total: 2.72 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -2.06 Total: 10.52 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -0.07 Total: -70.88 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.03 Total: 18.12 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.61 -9.53 -46.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968330814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.445 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.25 seconds