Wall clock time and date at job start Wed Apr 1 2020 00:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08998 * 109.49511 * 61.43649 * 16 2 1 18 18 N 1.46500 * 109.52372 * 301.35896 * 16 2 1 19 19 C 1.34775 * 119.99842 * 155.15123 * 18 16 2 20 20 O 1.21554 * 119.99999 * 359.97438 * 19 18 16 21 21 C 1.47866 * 119.99797 * 179.97438 * 19 18 16 22 22 N 1.34551 * 126.05146 * 0.02562 * 21 19 18 23 23 C 1.30865 * 107.26996 * 180.02562 * 22 21 19 24 24 N 1.34588 * 107.62909 * 0.02562 * 23 22 21 25 25 C 1.46494 * 125.74915 * 180.02562 * 24 23 22 26 26 C 1.52999 * 109.47614 * 74.99692 * 25 24 23 27 27 C 1.53000 * 109.46856 * 194.99613 * 25 24 23 28 28 C 1.52999 * 109.47288 * 314.99158 * 25 24 23 29 29 N 1.28854 * 108.49882 * 359.72422 * 24 23 22 30 30 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 31 31 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 32 32 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 34 34 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 35 35 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 36 36 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 39 39 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 40 40 H 0.97001 * 120.00100 * 335.14305 * 18 16 2 41 41 H 1.08011 * 126.18642 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.47230 * 59.99554 * 26 25 24 43 43 H 1.08995 * 109.47368 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.46488 * 299.99828 * 26 25 24 45 45 H 1.09000 * 109.47334 * 60.00271 * 27 25 24 46 46 H 1.09004 * 109.47272 * 179.97438 * 27 25 24 47 47 H 1.09002 * 109.47061 * 299.99415 * 27 25 24 48 48 H 1.09003 * 109.47060 * 60.00021 * 28 25 24 49 49 H 1.08999 * 109.47199 * 180.02562 * 28 25 24 50 50 H 1.08999 * 109.47012 * 300.00674 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6977 -1.7556 1.2384 18 7 1.5254 -0.0494 2.4464 19 6 1.4000 -0.7327 3.6013 20 8 1.7133 -1.9062 3.6502 21 6 0.8813 -0.0549 4.8087 22 7 0.4996 1.2326 4.8917 23 6 0.1057 1.4426 6.1219 24 7 0.2446 0.2867 6.7972 25 6 -0.0820 0.0762 8.2097 26 6 -1.6009 -0.0035 8.3757 27 6 0.5528 -1.2302 8.6906 28 6 0.4611 1.2422 9.0381 29 7 0.7073 -0.6051 5.9904 30 1 -0.3634 0.5144 0.8896 31 1 -0.3632 0.5133 -0.8904 32 1 -0.3634 -1.0277 0.0005 33 1 1.6593 -0.2219 -2.1447 34 1 1.6981 -1.7560 -1.2419 35 1 3.9144 0.3410 -1.3671 36 1 3.9439 -1.2830 -2.0984 37 1 6.6845 -1.5121 2.6270 38 1 3.9415 -1.2845 2.0986 39 1 3.9142 0.3409 1.3675 40 1 1.2751 0.8870 2.4072 41 1 -0.2640 2.3749 6.5228 42 1 -1.9878 -0.8342 7.7855 43 1 -1.8438 -0.1597 9.4266 44 1 -2.0530 0.9272 8.0330 45 1 1.6349 -1.1735 8.5725 46 1 0.3102 -1.3867 9.7417 47 1 0.1658 -2.0610 8.1005 48 1 0.0089 2.1730 8.6955 49 1 0.2185 1.0853 10.0891 50 1 1.5432 1.2989 8.9198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968330814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:07 Heat of formation + Delta-G solvation = 45.635451 kcal Electronic energy + Delta-G solvation = -30081.239032 eV Core-core repulsion = 26144.890045 eV Total energy + Delta-G solvation = -3936.348987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 16.18 seconds Orbital eigenvalues (eV) -44.54309 -41.00573 -39.17242 -38.20237 -36.14218 -34.78607 -33.61035 -32.83246 -32.13203 -30.51992 -29.01174 -28.48217 -28.40188 -26.26229 -25.58618 -24.01526 -23.53177 -22.64242 -21.55573 -21.10134 -20.91294 -18.89485 -18.74645 -17.61594 -17.50098 -17.30564 -16.80974 -16.05883 -15.86184 -15.54938 -15.28363 -15.26450 -15.07961 -14.96783 -14.79448 -14.45004 -14.10876 -13.81018 -13.58628 -13.32684 -13.27938 -13.25450 -13.06592 -13.02484 -12.78273 -12.72611 -12.56755 -12.41616 -12.36681 -12.20372 -12.01225 -11.92894 -11.64432 -11.61528 -11.49558 -11.41765 -11.22321 -11.16058 -10.61112 -10.55324 -10.12919 -8.70258 -7.90379 -5.36343 0.32616 1.11301 1.17127 1.38613 1.44028 1.51872 2.01346 2.28630 2.47981 3.07077 3.24426 3.29082 3.65382 3.70270 3.76350 3.78634 3.82877 3.91220 4.00405 4.16055 4.46313 4.51999 4.56093 4.57275 4.59764 4.66281 4.67885 4.74453 4.76963 4.79248 4.90198 4.92791 4.98230 5.09071 5.12304 5.15139 5.17675 5.19302 5.21715 5.25579 5.35593 5.39550 5.44974 5.52709 5.60732 5.70227 5.75341 6.33360 6.43183 6.98713 7.09539 7.16543 7.83534 8.33478 9.14703 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.003318 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.254436 B = 8435.648377 C =10068.693737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.263 4.263 8 H 0.071 0.929 9 C -0.052 4.052 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.274 1.274 13 H -0.299 1.299 14 H -0.271 1.271 15 C 0.180 3.820 16 C 0.141 3.859 17 H 0.054 0.946 18 N -0.682 5.682 19 C 0.604 3.396 20 O -0.568 6.568 21 C 0.117 3.883 22 N -0.500 5.500 23 C 0.202 3.798 24 N -0.288 5.288 25 C 0.156 3.844 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.155 4.155 29 N -0.277 5.277 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.246 0.754 38 H 0.041 0.959 39 H -0.001 1.001 40 H 0.416 0.584 41 H 0.277 0.723 42 H 0.045 0.955 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.112 0.888 47 H 0.049 0.951 48 H 0.095 0.905 49 H 0.116 0.884 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 11.578 13.778 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.393 4.393 8 H 0.088 0.912 9 C -0.248 4.248 10 N -0.578 5.578 11 Si 0.790 3.210 12 H -0.200 1.200 13 H -0.226 1.226 14 H -0.196 1.196 15 C 0.053 3.947 16 C 0.035 3.965 17 H 0.072 0.928 18 N -0.333 5.333 19 C 0.387 3.613 20 O -0.444 6.444 21 C -0.161 4.161 22 N -0.226 5.226 23 C -0.092 4.092 24 N -0.085 5.085 25 C 0.076 3.924 26 C -0.211 4.211 27 C -0.209 4.209 28 C -0.213 4.213 29 N -0.117 5.117 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.292 0.708 42 H 0.064 0.936 43 H 0.133 0.867 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.131 0.869 47 H 0.068 0.932 48 H 0.113 0.887 49 H 0.134 0.866 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.740 10.287 13.758 26.168 hybrid contribution 1.061 -0.593 0.486 1.309 sum -18.679 9.694 14.243 25.411 Atomic orbital electron populations 1.21769 0.93014 1.01690 1.02749 1.21330 0.96945 0.99431 0.92629 0.90191 1.22027 0.95670 1.00310 0.97330 1.21200 0.93601 0.96293 0.87891 1.44224 1.48115 1.39920 1.00919 1.19506 1.09262 1.03883 1.06698 0.91164 1.25832 0.98708 1.00342 0.99901 1.70185 1.38215 1.30915 1.18460 0.85349 0.78829 0.80421 0.76389 1.19990 1.22618 1.19577 1.20751 0.89483 0.95026 0.89475 1.21649 0.95061 0.95982 0.83811 0.92789 1.45553 1.64056 1.15026 1.08663 1.16736 0.77482 0.85023 0.82028 1.90815 1.51299 1.17644 1.84692 1.23367 1.08578 0.90510 0.93681 1.71190 1.17766 1.13594 1.20079 1.27283 1.00019 0.94977 0.86931 1.48220 1.41721 1.06774 1.11765 1.21690 0.98571 0.99669 0.72509 1.22275 0.89816 1.03591 1.05437 1.22033 1.00385 0.94996 1.03439 1.22311 1.01430 0.96079 1.01502 1.74241 1.15663 1.20353 1.01455 0.92457 0.89924 0.93726 0.88124 0.92949 0.95959 0.92312 0.94531 0.94054 0.98273 0.74683 0.70801 0.93619 0.86701 0.89539 0.93658 0.86899 0.93215 0.88662 0.86589 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.02 71.98 0.65 -2.80 16 2 C -0.08 -2.75 2.27 -10.66 -0.02 -2.77 16 3 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 4 C -0.11 -3.77 5.39 30.77 0.17 -3.60 16 5 C 0.13 5.70 6.50 86.36 0.56 6.26 16 6 N -0.61 -32.91 2.99 -699.11 -2.09 -35.01 16 7 C -0.26 -15.68 9.58 84.04 0.81 -14.87 16 8 H 0.07 4.02 7.88 -2.91 -0.02 3.99 16 9 C -0.05 -3.22 4.92 84.86 0.42 -2.80 16 10 N -0.93 -60.59 11.20 21.65 0.24 -60.35 16 11 Si 0.96 49.50 29.59 68.60 2.03 51.52 16 12 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 14 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 15 C 0.18 9.71 4.88 86.36 0.42 10.13 16 16 C 0.14 6.06 2.06 45.07 0.09 6.15 16 17 H 0.05 2.66 7.58 -2.39 -0.02 2.64 16 18 N -0.68 -26.64 4.37 -445.02 -1.94 -28.58 16 19 C 0.60 26.80 7.80 86.79 0.68 27.48 16 20 O -0.57 -30.78 16.75 -3.89 -0.07 -30.84 16 21 C 0.12 4.36 7.96 137.12 1.09 5.45 16 22 N -0.50 -14.39 11.09 -193.02 -2.14 -16.53 16 23 C 0.20 3.84 11.71 180.30 2.11 5.96 16 24 N -0.29 -6.41 3.16 -311.59 -0.99 -7.40 16 25 C 0.16 1.99 1.22 3.60 0.00 2.00 16 26 C -0.15 -1.16 8.72 71.98 0.63 -0.53 16 27 C -0.15 -2.47 8.05 71.98 0.58 -1.89 16 28 C -0.16 -0.91 8.28 71.98 0.60 -0.31 16 29 N -0.28 -9.53 11.09 -52.44 -0.58 -10.11 16 30 H 0.06 1.41 7.36 -2.39 -0.02 1.39 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 37 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.04 2.67 6.06 -2.39 -0.01 2.66 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.42 13.69 8.01 -92.71 -0.74 12.95 16 41 H 0.28 1.56 7.53 -2.90 -0.02 1.54 16 42 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.05 1.08 8.02 -2.39 -0.02 1.06 16 48 H 0.09 0.11 7.34 -2.39 -0.02 0.09 16 49 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -89.68 399.96 3.42 -86.26 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.18 Total: 17.19 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 8.78 Total: 33.85 kcal Atomic # 7 Polarization: -150.47 SS G_CDS: -7.50 Total: -157.98 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.07 Total: -30.84 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.03 Total: 51.52 kcal Total: -89.68 3.42 -86.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968330814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.896 kcal (2) G-P(sol) polarization free energy of solvation -89.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.18 seconds