Wall clock time and date at job start Wed Apr 1 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21563 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.47715 * 120.00063 * 179.97438 * 5 4 2 8 8 C 1.41504 * 126.51711 * 179.70520 * 7 5 4 9 9 C 1.35369 * 105.50045 * 179.90100 * 8 7 5 10 10 N 1.35027 * 107.22913 * 0.36183 * 9 8 7 11 11 C 1.46498 * 124.88594 * 179.76159 * 10 9 8 12 12 C 1.52998 * 109.47586 * 124.97766 * 11 10 9 13 13 N 1.46901 * 109.47406 * 180.02562 * 12 11 10 14 14 C 1.46900 * 111.00015 * 169.99728 * 13 12 11 15 15 C 1.46895 * 110.99581 * 293.95255 * 13 12 11 16 16 N 1.28474 * 110.23491 * 359.76172 * 10 9 8 17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 18 18 C 1.53953 * 113.74647 * 158.73801 * 17 2 1 19 19 N 1.47803 * 86.03866 * 222.08719 * 18 17 2 20 20 C 1.36940 * 134.45480 * 204.64597 * 19 18 17 21 21 H 1.08004 * 120.00062 * 179.86839 * 20 19 18 22 22 C 1.38806 * 119.99897 * 359.86583 * 20 19 18 23 23 N 1.31618 * 120.00303 * 0.02562 * 22 20 19 24 24 Si 1.86812 * 119.99830 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46797 * 120.00021 * 24 22 20 27 27 H 1.48495 * 109.46799 * 239.99894 * 24 22 20 28 28 C 1.47580 * 91.05616 * 24.54814 * 19 18 17 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 1.07998 * 127.24720 * 0.02562 * 8 7 5 34 34 H 1.08000 * 126.38059 * 180.08725 * 9 8 7 35 35 H 1.09002 * 109.47233 * 244.97898 * 11 10 9 36 36 H 1.09000 * 109.47043 * 4.97418 * 11 10 9 37 37 H 1.09002 * 109.46722 * 299.99804 * 12 11 10 38 38 H 1.09000 * 109.47214 * 59.99756 * 12 11 10 39 39 H 1.09005 * 109.47043 * 60.00027 * 14 13 12 40 40 H 1.08997 * 109.47113 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47346 * 300.00037 * 14 13 12 42 42 H 1.08993 * 109.47471 * 60.00095 * 15 13 12 43 43 H 1.09006 * 109.46964 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.47361 * 299.99524 * 15 13 12 45 45 H 1.08997 * 112.94423 * 290.33469 * 17 2 1 46 46 H 1.08999 * 113.76379 * 336.35463 * 18 17 2 47 47 H 1.09004 * 113.76409 * 107.74717 * 18 17 2 48 48 H 0.96996 * 120.00162 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.77170 * 221.15419 * 28 19 18 50 50 H 1.09002 * 113.86789 * 89.76287 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1614 2.4116 7 6 2.6388 -0.7146 3.5634 8 6 2.8315 -0.1456 4.8446 9 6 3.2876 -1.1543 5.6236 10 7 3.3683 -2.2551 4.8459 11 6 3.8248 -3.5707 5.3008 12 6 2.7544 -4.6182 4.9881 13 7 3.2119 -5.9374 5.4449 14 6 2.1247 -6.9232 5.3799 15 6 4.3772 -6.3870 4.6717 16 7 2.9873 -1.9829 3.6495 17 6 2.0400 -0.7212 -1.2491 18 6 3.4849 -0.3520 -1.6316 19 7 2.9979 -0.3177 -3.0267 20 6 3.5876 -0.4758 -4.2525 21 1 2.9929 -0.4038 -5.1512 22 6 4.9497 -0.7284 -4.3400 23 7 5.6744 -0.8166 -3.2449 24 14 5.7542 -0.9434 -6.0123 25 1 4.7293 -0.7985 -7.0769 26 1 6.8045 0.0908 -6.1928 27 1 6.3685 -2.2927 -6.0961 28 6 1.6214 -0.0472 -2.5684 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 2.6505 0.8776 5.1393 34 1 3.5437 -1.0894 6.6708 35 1 4.7499 -3.8321 4.7869 36 1 4.0021 -3.5421 6.3759 37 1 1.8293 -4.3569 5.5021 38 1 2.5771 -4.6469 3.9130 39 1 1.7751 -7.0113 4.3512 40 1 2.4907 -7.8908 5.7231 41 1 1.3017 -6.5989 6.0168 42 1 5.1917 -5.6731 4.7938 43 1 4.6951 -7.3662 5.0300 44 1 4.1092 -6.4558 3.6174 45 1 1.8529 -1.7948 -1.2261 46 1 3.8047 0.6191 -1.2539 47 1 4.2071 -1.1448 -1.4365 48 1 6.6262 -0.9927 -3.3061 49 1 0.8587 -0.5970 -3.1199 50 1 1.3910 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969688091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:48 Heat of formation + Delta-G solvation = 108.710322 kcal Electronic energy + Delta-G solvation = -28799.660795 eV Core-core repulsion = 24866.046940 eV Total energy + Delta-G solvation = -3933.613855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.75664 -39.46326 -38.17036 -37.84958 -34.68718 -33.89508 -32.16606 -31.04172 -30.31139 -29.26202 -28.06152 -27.46234 -25.62583 -24.72618 -23.97714 -23.04448 -21.67769 -21.47729 -20.84800 -19.92413 -18.97033 -17.85756 -16.89165 -16.65469 -16.39762 -15.89822 -15.87826 -15.37038 -14.90489 -14.82301 -14.56877 -14.11928 -14.07438 -13.83047 -13.49798 -13.37627 -13.22545 -12.94493 -12.85709 -12.45021 -12.35897 -12.22932 -12.07549 -12.00483 -11.60930 -11.58585 -11.27497 -11.23290 -10.95316 -10.88128 -10.68616 -10.28650 -10.00683 -9.73174 -9.67460 -9.37388 -9.35118 -9.16443 -8.93809 -8.75717 -8.66593 -6.82031 -5.71855 -3.04007 1.58625 2.07799 2.17859 3.37685 3.41274 3.46291 3.48981 3.53156 3.61160 4.11991 4.28228 4.48944 4.60588 4.62308 4.71544 4.77885 4.94392 5.02974 5.05925 5.15747 5.24707 5.26124 5.34508 5.37485 5.41274 5.42650 5.49260 5.57599 5.59569 5.69236 5.74240 5.88853 6.02346 6.11303 6.27246 6.33890 6.37885 6.40924 6.43345 6.48154 6.63083 6.66120 6.74394 6.90142 7.30340 7.43445 7.62164 7.66111 7.94302 8.03025 8.47166 9.09337 9.75665 10.65752 11.45162 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.002648 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.263264 B =10571.783242 C =12104.464712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.704 5.704 5 C 0.603 3.397 6 O -0.538 6.538 7 C -0.010 4.010 8 C -0.179 4.179 9 C -0.019 4.019 10 N -0.283 5.283 11 C 0.124 3.876 12 C 0.041 3.959 13 N -0.546 5.546 14 C 0.025 3.975 15 C 0.014 3.986 16 N -0.259 5.259 17 C -0.146 4.146 18 C 0.171 3.829 19 N -0.614 5.614 20 C -0.221 4.221 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.131 3.869 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.405 0.595 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.087 0.913 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.252 0.748 49 H 0.044 0.956 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -9.693 22.990 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.107 0.893 4 N -0.353 5.353 5 C 0.387 3.613 6 O -0.414 6.414 7 C -0.171 4.171 8 C -0.208 4.208 9 C -0.161 4.161 10 N -0.072 5.072 11 C 0.004 3.996 12 C -0.088 4.088 13 N -0.270 5.270 14 C -0.123 4.123 15 C -0.134 4.134 16 N -0.095 5.095 17 C -0.166 4.166 18 C 0.046 3.954 19 N -0.340 5.340 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.004 3.996 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.179 0.821 34 H 0.198 0.802 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.105 0.895 46 H 0.044 0.956 47 H 0.089 0.911 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.591 -9.958 22.667 25.620 hybrid contribution 0.482 0.115 -1.179 1.279 sum -6.109 -9.843 21.488 24.412 Atomic orbital electron populations 1.22133 0.95650 1.01738 1.02109 1.21127 0.93498 0.97613 0.83201 0.89326 1.45949 1.65901 1.14369 1.09126 1.16885 0.77320 0.85647 0.81485 1.90773 1.51046 1.14939 1.84609 1.22069 1.08034 0.90722 0.96272 1.21785 1.06322 1.00760 0.91885 1.22852 1.07432 0.86667 0.99194 1.45447 1.46117 1.09790 1.05849 1.21958 0.98243 0.77759 1.01668 1.22345 0.97464 0.88441 1.00554 1.61941 1.07714 1.02218 1.55126 1.22391 0.93843 0.95636 1.00475 1.22539 0.93202 1.01598 0.96033 1.73501 1.15624 1.17309 1.03078 1.23808 1.00923 0.99641 0.92239 1.22289 0.91419 0.98519 0.83183 1.46011 1.03333 1.82581 1.02033 1.19072 0.91430 1.41329 0.83001 0.90248 1.24786 0.96076 1.02540 0.97210 1.69836 1.05961 1.55347 1.25648 0.86063 0.79320 0.77335 0.83163 1.20482 1.21787 1.21771 1.22490 0.89596 0.96638 0.90874 0.92785 0.91374 0.92704 0.76072 0.82057 0.80183 0.88740 0.87074 0.89989 0.92447 0.95103 0.90908 0.91176 0.91009 0.90922 0.94773 0.89461 0.95567 0.91090 0.93789 0.93800 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.31 37.16 0.35 -1.90 16 2 C 0.15 2.49 2.38 -67.94 -0.16 2.33 16 3 H 0.09 1.66 7.41 -51.93 -0.39 1.28 16 4 N -0.70 -11.09 5.07 -54.80 -0.28 -11.37 16 5 C 0.60 10.08 7.79 -12.39 -0.10 9.98 16 6 O -0.54 -10.42 16.59 5.31 0.09 -10.34 16 7 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 8 C -0.18 -2.16 10.81 -39.36 -0.43 -2.58 16 9 C -0.02 -0.17 11.40 -17.17 -0.20 -0.37 16 10 N -0.28 -2.82 3.41 -61.33 -0.21 -3.03 16 11 C 0.12 0.85 6.32 -4.04 -0.03 0.82 16 12 C 0.04 0.30 5.06 -3.82 -0.02 0.28 16 13 N -0.55 -3.62 5.02 -251.26 -1.26 -4.88 16 14 C 0.02 0.14 9.57 60.06 0.57 0.72 16 15 C 0.01 0.09 9.32 60.06 0.56 0.65 16 16 N -0.26 -3.38 11.36 33.42 0.38 -3.00 16 17 C -0.15 -2.75 3.47 -89.69 -0.31 -3.06 16 18 C 0.17 4.15 7.08 -2.84 -0.02 4.13 16 19 N -0.61 -16.16 3.70 -177.68 -0.66 -16.82 16 20 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 21 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.92 -27.95 11.39 55.49 0.63 -27.32 16 24 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.13 2.70 7.64 -2.96 -0.02 2.68 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.40 5.93 8.33 -40.82 -0.34 5.59 16 33 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.09 0.63 6.55 -51.93 -0.34 0.29 16 36 H 0.11 0.50 8.04 -51.93 -0.42 0.08 16 37 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 39 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 41 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.07 0.40 6.47 -51.93 -0.34 0.06 16 43 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 44 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 47 H 0.07 1.90 7.16 -51.93 -0.37 1.53 16 48 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 410.07 15.07 6.18 6.18 Total: -1.00 -35.19 410.07 -9.24 -44.44 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.45 Total: 2.55 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.64 Total: 6.05 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -1.39 Total: -66.42 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.19 -9.24 -44.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969688091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.146 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds