Wall clock time and date at job start Wed Apr 1 2020 01:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21563 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.47715 * 120.00063 * 179.97438 * 5 4 2 8 8 C 1.41504 * 126.51711 * 179.70520 * 7 5 4 9 9 C 1.35369 * 105.50045 * 179.90100 * 8 7 5 10 10 N 1.35027 * 107.22913 * 0.36183 * 9 8 7 11 11 C 1.46498 * 124.88594 * 179.76159 * 10 9 8 12 12 C 1.52998 * 109.47586 * 124.97766 * 11 10 9 13 13 N 1.46901 * 109.47406 * 180.02562 * 12 11 10 14 14 C 1.46900 * 111.00015 * 169.99728 * 13 12 11 15 15 C 1.46895 * 110.99581 * 293.95255 * 13 12 11 16 16 N 1.28474 * 110.23491 * 359.76172 * 10 9 8 17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 18 18 C 1.53953 * 113.74647 * 158.73801 * 17 2 1 19 19 N 1.47803 * 86.03866 * 222.08719 * 18 17 2 20 20 C 1.36940 * 134.45480 * 204.64597 * 19 18 17 21 21 H 1.08004 * 120.00062 * 179.86839 * 20 19 18 22 22 C 1.38806 * 119.99897 * 359.86583 * 20 19 18 23 23 N 1.31618 * 120.00303 * 0.02562 * 22 20 19 24 24 Si 1.86812 * 119.99830 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47087 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46797 * 120.00021 * 24 22 20 27 27 H 1.48495 * 109.46799 * 239.99894 * 24 22 20 28 28 C 1.47580 * 91.05616 * 24.54814 * 19 18 17 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 33 33 H 1.07998 * 127.24720 * 0.02562 * 8 7 5 34 34 H 1.08000 * 126.38059 * 180.08725 * 9 8 7 35 35 H 1.09002 * 109.47233 * 244.97898 * 11 10 9 36 36 H 1.09000 * 109.47043 * 4.97418 * 11 10 9 37 37 H 1.09002 * 109.46722 * 299.99804 * 12 11 10 38 38 H 1.09000 * 109.47214 * 59.99756 * 12 11 10 39 39 H 1.09005 * 109.47043 * 60.00027 * 14 13 12 40 40 H 1.08997 * 109.47113 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47346 * 300.00037 * 14 13 12 42 42 H 1.08993 * 109.47471 * 60.00095 * 15 13 12 43 43 H 1.09006 * 109.46964 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.47361 * 299.99524 * 15 13 12 45 45 H 1.08997 * 112.94423 * 290.33469 * 17 2 1 46 46 H 1.08999 * 113.76379 * 336.35463 * 18 17 2 47 47 H 1.09004 * 113.76409 * 107.74717 * 18 17 2 48 48 H 0.96996 * 120.00162 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.77170 * 221.15419 * 28 19 18 50 50 H 1.09002 * 113.86789 * 89.76287 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1614 2.4116 7 6 2.6388 -0.7146 3.5634 8 6 2.8315 -0.1456 4.8446 9 6 3.2876 -1.1543 5.6236 10 7 3.3683 -2.2551 4.8459 11 6 3.8248 -3.5707 5.3008 12 6 2.7544 -4.6182 4.9881 13 7 3.2119 -5.9374 5.4449 14 6 2.1247 -6.9232 5.3799 15 6 4.3772 -6.3870 4.6717 16 7 2.9873 -1.9829 3.6495 17 6 2.0400 -0.7212 -1.2491 18 6 3.4849 -0.3520 -1.6316 19 7 2.9979 -0.3177 -3.0267 20 6 3.5876 -0.4758 -4.2525 21 1 2.9929 -0.4038 -5.1512 22 6 4.9497 -0.7284 -4.3400 23 7 5.6744 -0.8166 -3.2449 24 14 5.7542 -0.9434 -6.0123 25 1 4.7293 -0.7985 -7.0769 26 1 6.8045 0.0908 -6.1928 27 1 6.3685 -2.2927 -6.0961 28 6 1.6214 -0.0472 -2.5684 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 2.6505 0.8776 5.1393 34 1 3.5437 -1.0894 6.6708 35 1 4.7499 -3.8321 4.7869 36 1 4.0021 -3.5421 6.3759 37 1 1.8293 -4.3569 5.5021 38 1 2.5771 -4.6469 3.9130 39 1 1.7751 -7.0113 4.3512 40 1 2.4907 -7.8908 5.7231 41 1 1.3017 -6.5989 6.0168 42 1 5.1917 -5.6731 4.7938 43 1 4.6951 -7.3662 5.0300 44 1 4.1092 -6.4558 3.6174 45 1 1.8529 -1.7948 -1.2261 46 1 3.8047 0.6191 -1.2539 47 1 4.2071 -1.1448 -1.4365 48 1 6.6262 -0.9927 -3.3061 49 1 0.8587 -0.5970 -3.1199 50 1 1.3910 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969688091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:47 Heat of formation + Delta-G solvation = 83.050632 kcal Electronic energy + Delta-G solvation = -28800.773483 eV Core-core repulsion = 24866.046940 eV Total energy + Delta-G solvation = -3934.726543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.62410 -40.87937 -39.56865 -38.65465 -36.19599 -34.67014 -34.16202 -32.17911 -31.41215 -30.10052 -29.35321 -28.53704 -26.80937 -26.15934 -25.58144 -24.17639 -22.64095 -22.42142 -21.93835 -21.23431 -20.40641 -18.88971 -18.69191 -17.75361 -17.38908 -17.15047 -16.92071 -16.45940 -16.14933 -15.77698 -15.69622 -15.62475 -15.21310 -14.88801 -14.70887 -14.64273 -14.29532 -14.17381 -13.87630 -13.44967 -13.38356 -13.27601 -13.10455 -12.95892 -12.92486 -12.72588 -12.68411 -12.55941 -12.53934 -12.18525 -11.98976 -11.84342 -11.75435 -11.52967 -11.31098 -11.09402 -10.88915 -10.30397 -10.09407 -9.92420 -9.48630 -8.93520 -7.91201 -5.25425 0.55068 1.22993 1.43593 1.45216 1.45790 1.55707 2.18575 2.41838 2.46193 2.94494 3.29087 3.35011 3.40252 3.71314 3.73750 3.83802 3.93743 4.00882 4.19409 4.22524 4.28258 4.30623 4.45802 4.47887 4.56628 4.57461 4.65273 4.72988 4.73266 4.77135 4.79844 4.82448 4.83398 4.86188 4.99664 5.00183 5.02957 5.08706 5.24326 5.32444 5.36162 5.46613 5.54653 5.64480 5.80249 5.89777 5.91784 5.97235 6.47754 6.90086 6.92782 7.20277 7.59670 8.55690 9.25848 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.002648 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.263264 B =10571.783242 C =12104.464712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.158 3.842 3 H 0.064 0.936 4 N -0.700 5.700 5 C 0.600 3.400 6 O -0.573 6.573 7 C -0.043 4.043 8 C -0.203 4.203 9 C 0.007 3.993 10 N -0.277 5.277 11 C 0.121 3.879 12 C 0.047 3.953 13 N -0.544 5.544 14 C 0.022 3.978 15 C 0.013 3.987 16 N -0.276 5.276 17 C -0.110 4.110 18 C 0.168 3.832 19 N -0.644 5.644 20 C -0.233 4.233 21 H 0.087 0.913 22 C -0.072 4.072 23 N -0.956 5.956 24 Si 0.981 3.019 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.290 1.290 28 C 0.133 3.867 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.410 0.590 33 H 0.164 0.836 34 H 0.230 0.770 35 H 0.097 0.903 36 H 0.146 0.854 37 H 0.083 0.917 38 H 0.033 0.967 39 H 0.021 0.979 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.020 0.980 45 H 0.100 0.900 46 H 0.003 0.997 47 H 0.038 0.962 48 H 0.247 0.753 49 H 0.067 0.933 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -10.951 24.348 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.082 0.918 4 N -0.350 5.350 5 C 0.385 3.615 6 O -0.451 6.451 7 C -0.202 4.202 8 C -0.231 4.231 9 C -0.136 4.136 10 N -0.066 5.066 11 C 0.002 3.998 12 C -0.082 4.082 13 N -0.269 5.269 14 C -0.126 4.126 15 C -0.135 4.135 16 N -0.113 5.113 17 C -0.130 4.130 18 C 0.043 3.957 19 N -0.371 5.371 20 C -0.362 4.362 21 H 0.104 0.896 22 C -0.265 4.265 23 N -0.605 5.605 24 Si 0.809 3.191 25 H -0.187 1.187 26 H -0.222 1.222 27 H -0.217 1.217 28 C 0.008 3.992 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.246 0.754 33 H 0.182 0.818 34 H 0.246 0.754 35 H 0.115 0.885 36 H 0.164 0.836 37 H 0.101 0.899 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.038 0.962 45 H 0.119 0.881 46 H 0.021 0.979 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.085 0.915 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.449 -11.238 24.018 27.544 hybrid contribution 0.747 0.455 -1.516 1.750 sum -6.702 -10.783 22.503 25.837 Atomic orbital electron populations 1.22047 0.93011 1.03033 1.02546 1.20925 0.95336 0.95890 0.82531 0.91774 1.45894 1.65789 1.14519 1.08818 1.17239 0.76646 0.85358 0.82209 1.90735 1.52718 1.16376 1.85304 1.21876 1.10269 0.91732 0.96297 1.22010 1.07703 1.01902 0.91469 1.23497 1.04488 0.84992 1.00597 1.45808 1.44574 1.11105 1.05072 1.22259 0.97837 0.76113 1.03605 1.22242 0.97784 0.89132 0.99061 1.61999 1.07996 1.02067 1.54793 1.22455 0.93926 0.96036 1.00140 1.22589 0.93249 1.02469 0.95228 1.73444 1.16275 1.16700 1.04912 1.23439 0.96387 1.00368 0.92824 1.22149 0.93948 0.96347 0.83287 1.46437 1.05893 1.82854 1.01898 1.19513 0.91961 1.40307 0.84373 0.89555 1.25691 0.96820 1.03021 1.00928 1.70044 1.05762 1.56832 1.27840 0.84973 0.78207 0.76772 0.79161 1.18691 1.22186 1.21692 1.22677 0.87616 0.97674 0.91276 0.91020 0.90196 0.93011 0.75430 0.81797 0.75375 0.88521 0.83620 0.89892 0.94863 0.95996 0.89807 0.90539 0.90316 0.89837 0.96159 0.88148 0.97872 0.94329 0.94413 0.91504 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.31 71.98 0.67 -3.31 16 2 C 0.16 5.26 2.38 44.99 0.11 5.37 16 3 H 0.06 2.48 7.41 -2.39 -0.02 2.47 16 4 N -0.70 -22.55 5.07 -445.56 -2.26 -24.81 16 5 C 0.60 20.72 7.79 86.75 0.68 21.39 16 6 O -0.57 -23.05 16.59 -3.91 -0.06 -23.12 16 7 C -0.04 -1.26 7.13 42.46 0.30 -0.95 16 8 C -0.20 -4.71 10.81 22.41 0.24 -4.47 16 9 C 0.01 0.11 11.40 83.54 0.95 1.06 16 10 N -0.28 -4.98 3.41 -347.96 -1.19 -6.17 16 11 C 0.12 1.35 6.32 86.38 0.55 1.89 16 12 C 0.05 0.61 5.06 86.30 0.44 1.05 16 13 N -0.54 -6.30 5.02 -948.85 -4.76 -11.06 16 14 C 0.02 0.23 9.57 127.69 1.22 1.45 16 15 C 0.01 0.14 9.32 127.69 1.19 1.33 16 16 N -0.28 -7.12 11.36 -48.17 -0.55 -7.66 16 17 C -0.11 -4.14 3.47 -10.13 -0.04 -4.18 16 18 C 0.17 8.48 7.08 86.45 0.61 9.09 16 19 N -0.64 -34.33 3.70 -716.07 -2.65 -36.99 16 20 C -0.23 -13.49 10.70 84.03 0.90 -12.59 16 21 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 22 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 23 N -0.96 -59.91 11.39 21.65 0.25 -59.66 16 24 Si 0.98 46.96 29.55 68.60 2.03 48.98 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 C 0.13 5.35 7.64 86.49 0.66 6.01 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.96 7.52 -2.39 -0.02 1.95 16 31 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.41 12.25 8.33 -92.70 -0.77 11.48 16 33 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.23 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.10 1.09 6.55 -2.39 -0.02 1.08 16 36 H 0.15 0.67 8.04 -2.39 -0.02 0.65 16 37 H 0.08 1.07 8.06 -2.39 -0.02 1.05 16 38 H 0.03 0.60 8.06 -2.39 -0.02 0.58 16 39 H 0.02 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 41 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 42 H 0.08 0.74 6.47 -2.39 -0.02 0.73 16 43 H 0.08 0.73 8.12 -2.38 -0.02 0.71 16 44 H 0.02 0.28 8.14 -2.38 -0.02 0.26 16 45 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.00 0.19 7.99 -2.39 -0.02 0.17 16 47 H 0.04 2.17 7.16 -2.38 -0.02 2.15 16 48 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -79.36 410.07 -0.09 -79.45 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.15 Total: 21.68 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 8.95 Total: 19.36 kcal Atomic # 7 Polarization: -135.19 SS G_CDS: -11.16 Total: -146.35 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -79.36 -0.09 -79.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969688091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.503 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds