Wall clock time and date at job start Wed Apr 1 2020 01:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47178 * 2 1 4 4 N 1.46496 * 109.47287 * 239.99958 * 2 1 3 5 5 C 1.34774 * 120.00011 * 84.99904 * 4 2 1 6 6 O 1.21605 * 120.00217 * 0.02562 * 5 4 2 7 7 C 1.47434 * 119.99818 * 180.02562 * 5 4 2 8 8 C 1.41286 * 126.41773 * 359.97438 * 7 5 4 9 9 N 1.30444 * 108.02686 * 180.02562 * 8 7 5 10 10 N 1.39937 * 108.89424 * 359.97438 * 9 8 7 11 11 C 1.46497 * 125.75218 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47527 * 304.97910 * 11 10 9 13 13 N 1.46894 * 109.47635 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00004 * 66.04355 * 13 12 11 15 15 C 1.46897 * 111.00462 * 190.00026 * 13 12 11 16 16 C 1.34258 * 108.49400 * 0.02562 * 10 9 8 17 17 C 1.52996 * 109.47060 * 119.99431 * 2 1 3 18 18 C 1.53940 * 113.74572 * 282.19860 * 17 2 1 19 19 N 1.47814 * 86.03974 * 222.08525 * 18 17 2 20 20 C 1.36934 * 134.45877 * 204.64984 * 19 18 17 21 21 H 1.08000 * 120.00210 * 182.57906 * 20 19 18 22 22 C 1.38817 * 120.00066 * 2.57900 * 20 19 18 23 23 N 1.31625 * 119.99751 * 353.41671 * 22 20 19 24 24 Si 1.86795 * 120.00215 * 173.42101 * 22 20 19 25 25 H 1.48495 * 109.47514 * 94.96887 * 24 22 20 26 26 H 1.48501 * 109.46899 * 214.97184 * 24 22 20 27 27 H 1.48506 * 109.46885 * 334.96541 * 24 22 20 28 28 C 1.47583 * 91.04749 * 24.54769 * 19 18 17 29 29 H 1.09003 * 109.47360 * 304.49307 * 1 2 3 30 30 H 1.08999 * 109.46917 * 64.48891 * 1 2 3 31 31 H 1.08997 * 109.47442 * 184.49180 * 1 2 3 32 32 H 0.96996 * 119.99794 * 264.99923 * 4 2 1 33 33 H 1.08001 * 125.98689 * 359.97438 * 8 7 5 34 34 H 1.09008 * 109.46995 * 64.97521 * 11 10 9 35 35 H 1.09001 * 109.47230 * 184.97722 * 11 10 9 36 36 H 1.09004 * 109.47133 * 299.99952 * 12 11 10 37 37 H 1.09001 * 109.47019 * 59.99683 * 12 11 10 38 38 H 1.08996 * 109.46672 * 60.00204 * 14 13 12 39 39 H 1.09004 * 109.47091 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.47088 * 300.00465 * 14 13 12 41 41 H 1.09000 * 109.47242 * 59.99485 * 15 13 12 42 42 H 1.09001 * 109.47856 * 180.02562 * 15 13 12 43 43 H 1.09007 * 109.46952 * 300.00258 * 15 13 12 44 44 H 1.07996 * 126.28849 * 180.26304 * 16 10 9 45 45 H 1.09002 * 112.94063 * 53.79546 * 17 2 1 46 46 H 1.09004 * 113.77015 * 336.34658 * 18 17 2 47 47 H 1.09004 * 113.76966 * 107.74806 * 18 17 2 48 48 H 0.97000 * 119.99559 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.76439 * 221.15086 * 28 19 18 50 50 H 1.08999 * 113.86699 * 89.77375 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8583 1.1617 -2.4116 7 6 2.6380 -0.7135 -3.5610 8 6 3.0110 -2.0732 -3.6508 9 7 3.3898 -2.3077 -4.8769 10 7 3.2784 -1.1268 -5.6193 11 6 3.6071 -0.9738 -7.0387 12 6 5.0463 -1.4327 -7.2813 13 7 5.3757 -1.2799 -8.7047 14 6 5.3905 0.1369 -9.0925 15 6 6.6567 -1.9257 -9.0210 16 6 2.8195 -0.1576 -4.8115 17 6 2.0399 -0.7211 1.2493 18 6 1.9658 0.1299 2.5299 19 7 3.3032 -0.4143 2.8463 20 6 4.0103 -0.6096 4.0026 21 1 5.0166 -0.9994 3.9609 22 6 3.4335 -0.3067 5.2284 23 7 2.2601 0.2879 5.2746 24 14 4.3226 -0.7426 6.8122 25 1 5.0967 0.4331 7.2852 26 1 3.3300 -1.1303 7.8465 27 1 5.2479 -1.8774 6.5642 28 6 3.5693 -0.6650 1.4164 29 1 -0.3634 0.5820 0.8470 30 1 -0.3633 0.4426 -0.9275 31 1 -0.3634 -1.0245 0.0805 32 1 2.2490 -1.6317 -1.1525 33 1 2.9874 -2.7923 -2.8454 34 1 2.9267 -1.5804 -7.6366 35 1 3.5065 0.0733 -7.3242 36 1 5.7267 -0.8262 -6.6835 37 1 5.1469 -2.4798 -6.9958 38 1 6.1375 0.6674 -8.5020 39 1 5.6366 0.2213 -10.1511 40 1 4.4081 0.5732 -8.9123 41 1 6.5947 -2.9888 -8.7887 42 1 6.8766 -1.7971 -10.0808 43 1 7.4496 -1.4699 -8.4278 44 1 2.6238 0.8673 -5.0900 45 1 1.6225 -1.7217 1.3624 46 1 1.9614 1.2040 2.3440 47 1 1.1863 -0.1863 3.2231 48 1 1.8573 0.4999 6.1311 49 1 4.0676 -1.6148 1.2223 50 1 4.0371 0.1739 0.9012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970556648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:04 Heat of formation + Delta-G solvation = 103.667172 kcal Electronic energy + Delta-G solvation = -28231.552443 eV Core-core repulsion = 24297.719900 eV Total energy + Delta-G solvation = -3933.832542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.59246 -39.39756 -38.22891 -37.80005 -34.68353 -33.97785 -32.11990 -30.89451 -30.38890 -29.01634 -28.17319 -27.42466 -25.28605 -24.71351 -24.04946 -22.90447 -22.13922 -21.02928 -20.77018 -19.98129 -19.09500 -17.92898 -16.78993 -16.39889 -16.35382 -15.87948 -15.68189 -15.30503 -15.09648 -14.76346 -14.67778 -14.24887 -14.00065 -13.85991 -13.77721 -13.47440 -13.09593 -12.98071 -12.95564 -12.56322 -12.30058 -12.23206 -12.17161 -11.97601 -11.76559 -11.50745 -11.34088 -11.20100 -11.11906 -10.86738 -10.60926 -10.31488 -9.98241 -9.84979 -9.76730 -9.57192 -9.37737 -9.04939 -8.95548 -8.72011 -8.62109 -6.83893 -5.73824 -3.04300 1.37059 1.96660 2.05061 3.36021 3.41161 3.45819 3.46655 3.48556 3.57864 4.00277 4.34403 4.48686 4.50236 4.54528 4.58933 4.72560 4.79351 4.91252 5.01304 5.02301 5.11304 5.18901 5.25436 5.26860 5.30781 5.35750 5.38480 5.46899 5.56141 5.60441 5.74444 5.90165 6.08189 6.14024 6.18278 6.30286 6.33793 6.36970 6.43454 6.52657 6.56325 6.66972 6.70790 6.91063 7.26769 7.29992 7.42808 7.59673 7.80814 8.02033 8.49827 9.08436 9.74847 10.64923 11.43907 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.001894 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.921430 B =14778.060157 C =15665.917208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.153 3.847 3 H 0.087 0.913 4 N -0.714 5.714 5 C 0.593 3.407 6 O -0.555 6.555 7 C -0.287 4.287 8 C 0.083 3.917 9 N -0.296 5.296 10 N -0.363 5.363 11 C 0.135 3.865 12 C 0.043 3.957 13 N -0.545 5.545 14 C 0.015 3.985 15 C 0.025 3.975 16 C 0.125 3.875 17 C -0.146 4.146 18 C 0.175 3.825 19 N -0.613 5.613 20 C -0.222 4.222 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.126 3.874 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.397 0.603 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.028 0.972 44 H 0.186 0.814 45 H 0.088 0.912 46 H 0.028 0.972 47 H 0.073 0.927 48 H 0.253 0.747 49 H 0.040 0.960 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.903 -3.759 -29.600 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.105 0.895 4 N -0.363 5.363 5 C 0.380 3.620 6 O -0.434 6.434 7 C -0.301 4.301 8 C -0.105 4.105 9 N -0.116 5.116 10 N -0.143 5.143 11 C 0.013 3.987 12 C -0.086 4.086 13 N -0.270 5.270 14 C -0.133 4.133 15 C -0.123 4.123 16 C -0.026 4.026 17 C -0.166 4.166 18 C 0.050 3.950 19 N -0.339 5.339 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.000 4.000 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.230 0.770 33 H 0.208 0.792 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.203 0.797 45 H 0.107 0.893 46 H 0.046 0.954 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.868 -4.023 -30.514 30.835 hybrid contribution 1.005 0.512 1.955 2.257 sum 2.872 -3.511 -28.560 28.918 Atomic orbital electron populations 1.22108 0.95531 1.01847 1.02064 1.21081 0.93708 0.97434 0.82958 0.89483 1.45887 1.67071 1.13879 1.09512 1.17209 0.76885 0.85850 0.82089 1.90761 1.51803 1.15610 1.85223 1.20366 1.19305 0.95110 0.95362 1.24119 0.96081 0.95355 0.94930 1.77149 1.24648 1.04978 1.04806 1.48455 1.49228 1.07004 1.09572 1.21760 0.97665 1.03380 0.75866 1.22353 0.94539 1.03317 0.88370 1.61908 1.32681 1.14886 1.17483 1.22535 1.01596 0.87743 1.01467 1.22392 0.88692 0.99756 1.01443 1.22966 0.94607 0.95293 0.89724 1.23827 0.97561 1.00686 0.94550 1.22233 0.89570 0.93966 0.89271 1.46046 1.16102 1.72066 0.99670 1.19028 0.96860 1.36502 0.82601 0.90361 1.24776 0.97319 1.00978 0.97406 1.69829 1.17216 1.45610 1.24145 0.86128 0.78386 0.78005 0.83409 1.21749 1.21603 1.20615 1.22527 0.93162 0.97660 0.86674 0.91255 0.92828 0.92768 0.76974 0.79241 0.88351 0.88341 0.93921 0.88910 0.95168 0.90853 0.91090 0.90950 0.90914 0.95320 0.79662 0.89342 0.95395 0.90884 0.93679 0.94144 0.95032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.43 37.16 0.35 -1.90 16 2 C 0.15 2.38 2.28 -67.94 -0.16 2.23 16 3 H 0.09 1.58 7.49 -51.93 -0.39 1.19 16 4 N -0.71 -9.46 4.94 -54.88 -0.27 -9.73 16 5 C 0.59 8.50 7.78 -12.52 -0.10 8.40 16 6 O -0.55 -9.87 16.56 5.27 0.09 -9.78 16 7 C -0.29 -3.35 6.13 -105.06 -0.64 -4.00 16 8 C 0.08 0.85 11.50 -16.98 -0.20 0.66 16 9 N -0.30 -3.21 12.33 30.86 0.38 -2.83 16 10 N -0.36 -3.33 3.65 -60.81 -0.22 -3.55 16 11 C 0.13 0.84 6.41 -4.04 -0.03 0.81 16 12 C 0.04 0.28 5.13 -3.83 -0.02 0.26 16 13 N -0.55 -3.20 5.02 -251.26 -1.26 -4.46 16 14 C 0.01 0.07 9.32 60.07 0.56 0.63 16 15 C 0.03 0.13 9.57 60.06 0.57 0.70 16 16 C 0.13 1.25 11.25 -16.56 -0.19 1.06 16 17 C -0.15 -2.62 3.35 -89.70 -0.30 -2.92 16 18 C 0.18 4.09 7.02 -2.84 -0.02 4.07 16 19 N -0.61 -15.84 3.70 -177.68 -0.66 -16.50 16 20 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 21 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -27.51 11.43 55.49 0.63 -26.87 16 24 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.13 2.56 8.38 -2.97 -0.02 2.54 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.40 4.26 7.56 -40.82 -0.31 3.95 16 33 H 0.19 1.41 7.50 -52.49 -0.39 1.01 16 34 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.10 0.41 6.47 -51.93 -0.34 0.07 16 36 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 37 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 38 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 40 H 0.07 0.25 6.47 -51.93 -0.34 -0.09 16 41 H 0.07 0.36 8.12 -51.93 -0.42 -0.07 16 42 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 43 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 44 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 47 H 0.07 1.87 7.20 -51.93 -0.37 1.49 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -35.22 410.99 -9.01 -44.23 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.43 Total: 0.28 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.44 Total: 5.72 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -1.40 Total: -63.95 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.22 -9.01 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970556648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.898 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds