Wall clock time and date at job start Wed Apr 1 2020 01:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47178 * 2 1 4 4 N 1.46496 * 109.47287 * 239.99958 * 2 1 3 5 5 C 1.34774 * 120.00011 * 84.99904 * 4 2 1 6 6 O 1.21605 * 120.00217 * 0.02562 * 5 4 2 7 7 C 1.47434 * 119.99818 * 180.02562 * 5 4 2 8 8 C 1.41286 * 126.41773 * 359.97438 * 7 5 4 9 9 N 1.30444 * 108.02686 * 180.02562 * 8 7 5 10 10 N 1.39937 * 108.89424 * 359.97438 * 9 8 7 11 11 C 1.46497 * 125.75218 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47527 * 304.97910 * 11 10 9 13 13 N 1.46894 * 109.47635 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00004 * 66.04355 * 13 12 11 15 15 C 1.46897 * 111.00462 * 190.00026 * 13 12 11 16 16 C 1.34258 * 108.49400 * 0.02562 * 10 9 8 17 17 C 1.52996 * 109.47060 * 119.99431 * 2 1 3 18 18 C 1.53940 * 113.74572 * 282.19860 * 17 2 1 19 19 N 1.47814 * 86.03974 * 222.08525 * 18 17 2 20 20 C 1.36934 * 134.45877 * 204.64984 * 19 18 17 21 21 H 1.08000 * 120.00210 * 182.57906 * 20 19 18 22 22 C 1.38817 * 120.00066 * 2.57900 * 20 19 18 23 23 N 1.31625 * 119.99751 * 353.41671 * 22 20 19 24 24 Si 1.86795 * 120.00215 * 173.42101 * 22 20 19 25 25 H 1.48495 * 109.47514 * 94.96887 * 24 22 20 26 26 H 1.48501 * 109.46899 * 214.97184 * 24 22 20 27 27 H 1.48506 * 109.46885 * 334.96541 * 24 22 20 28 28 C 1.47583 * 91.04749 * 24.54769 * 19 18 17 29 29 H 1.09003 * 109.47360 * 304.49307 * 1 2 3 30 30 H 1.08999 * 109.46917 * 64.48891 * 1 2 3 31 31 H 1.08997 * 109.47442 * 184.49180 * 1 2 3 32 32 H 0.96996 * 119.99794 * 264.99923 * 4 2 1 33 33 H 1.08001 * 125.98689 * 359.97438 * 8 7 5 34 34 H 1.09008 * 109.46995 * 64.97521 * 11 10 9 35 35 H 1.09001 * 109.47230 * 184.97722 * 11 10 9 36 36 H 1.09004 * 109.47133 * 299.99952 * 12 11 10 37 37 H 1.09001 * 109.47019 * 59.99683 * 12 11 10 38 38 H 1.08996 * 109.46672 * 60.00204 * 14 13 12 39 39 H 1.09004 * 109.47091 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.47088 * 300.00465 * 14 13 12 41 41 H 1.09000 * 109.47242 * 59.99485 * 15 13 12 42 42 H 1.09001 * 109.47856 * 180.02562 * 15 13 12 43 43 H 1.09007 * 109.46952 * 300.00258 * 15 13 12 44 44 H 1.07996 * 126.28849 * 180.26304 * 16 10 9 45 45 H 1.09002 * 112.94063 * 53.79546 * 17 2 1 46 46 H 1.09004 * 113.77015 * 336.34658 * 18 17 2 47 47 H 1.09004 * 113.76966 * 107.74806 * 18 17 2 48 48 H 0.97000 * 119.99559 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.76439 * 221.15086 * 28 19 18 50 50 H 1.08999 * 113.86699 * 89.77375 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8583 1.1617 -2.4116 7 6 2.6380 -0.7135 -3.5610 8 6 3.0110 -2.0732 -3.6508 9 7 3.3898 -2.3077 -4.8769 10 7 3.2784 -1.1268 -5.6193 11 6 3.6071 -0.9738 -7.0387 12 6 5.0463 -1.4327 -7.2813 13 7 5.3757 -1.2799 -8.7047 14 6 5.3905 0.1369 -9.0925 15 6 6.6567 -1.9257 -9.0210 16 6 2.8195 -0.1576 -4.8115 17 6 2.0399 -0.7211 1.2493 18 6 1.9658 0.1299 2.5299 19 7 3.3032 -0.4143 2.8463 20 6 4.0103 -0.6096 4.0026 21 1 5.0166 -0.9994 3.9609 22 6 3.4335 -0.3067 5.2284 23 7 2.2601 0.2879 5.2746 24 14 4.3226 -0.7426 6.8122 25 1 5.0967 0.4331 7.2852 26 1 3.3300 -1.1303 7.8465 27 1 5.2479 -1.8774 6.5642 28 6 3.5693 -0.6650 1.4164 29 1 -0.3634 0.5820 0.8470 30 1 -0.3633 0.4426 -0.9275 31 1 -0.3634 -1.0245 0.0805 32 1 2.2490 -1.6317 -1.1525 33 1 2.9874 -2.7923 -2.8454 34 1 2.9267 -1.5804 -7.6366 35 1 3.5065 0.0733 -7.3242 36 1 5.7267 -0.8262 -6.6835 37 1 5.1469 -2.4798 -6.9958 38 1 6.1375 0.6674 -8.5020 39 1 5.6366 0.2213 -10.1511 40 1 4.4081 0.5732 -8.9123 41 1 6.5947 -2.9888 -8.7887 42 1 6.8766 -1.7971 -10.0808 43 1 7.4496 -1.4699 -8.4278 44 1 2.6238 0.8673 -5.0900 45 1 1.6225 -1.7217 1.3624 46 1 1.9614 1.2040 2.3440 47 1 1.1863 -0.1863 3.2231 48 1 1.8573 0.4999 6.1311 49 1 4.0676 -1.6148 1.2223 50 1 4.0371 0.1739 0.9012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970556648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:21:03 Heat of formation + Delta-G solvation = 78.473084 kcal Electronic energy + Delta-G solvation = -28232.644940 eV Core-core repulsion = 24297.719900 eV Total energy + Delta-G solvation = -3934.925040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.37779 -40.68480 -39.40262 -38.63693 -36.08033 -34.65947 -34.07354 -32.07945 -31.23663 -29.83048 -29.25258 -28.53610 -26.58836 -25.87962 -25.52115 -24.07912 -22.76662 -22.26292 -21.57220 -21.11710 -20.50069 -18.89637 -18.70158 -17.27294 -17.14916 -16.90932 -16.76612 -16.31102 -15.94642 -15.85641 -15.78531 -15.58438 -15.14836 -14.97934 -14.72189 -14.58499 -14.38278 -14.00023 -13.73561 -13.42012 -13.34271 -13.19076 -13.04733 -13.01724 -12.94378 -12.69517 -12.64749 -12.57878 -12.40404 -12.29906 -12.01610 -11.83519 -11.74343 -11.50017 -11.20014 -10.80010 -10.77958 -10.58670 -10.04709 -9.60981 -9.47327 -8.90481 -7.89565 -5.21557 0.55724 1.20991 1.31332 1.46387 1.47946 1.57466 2.35353 2.49069 2.55460 2.91108 3.31877 3.41471 3.43817 3.75305 3.82779 3.86090 3.92515 4.03509 4.15641 4.18327 4.27569 4.32924 4.33956 4.46003 4.50696 4.60433 4.62449 4.63360 4.75680 4.78208 4.81660 4.81920 4.90552 4.92587 4.98442 5.01097 5.02182 5.18151 5.27790 5.36186 5.43571 5.56641 5.64632 5.70818 5.78595 5.90036 5.95930 5.97385 6.52683 6.76745 6.93914 7.41846 7.62660 8.59187 9.28013 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.001894 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.921430 B =14778.060157 C =15665.917208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.165 3.835 3 H 0.060 0.940 4 N -0.704 5.704 5 C 0.594 3.406 6 O -0.595 6.595 7 C -0.310 4.310 8 C 0.088 3.912 9 N -0.317 5.317 10 N -0.358 5.358 11 C 0.132 3.868 12 C 0.051 3.949 13 N -0.552 5.552 14 C 0.012 3.988 15 C 0.024 3.976 16 C 0.133 3.867 17 C -0.107 4.107 18 C 0.170 3.830 19 N -0.644 5.644 20 C -0.236 4.236 21 H 0.082 0.918 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.978 3.022 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.266 1.266 28 C 0.128 3.872 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.214 0.786 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.025 0.975 44 H 0.205 0.795 45 H 0.107 0.893 46 H 0.011 0.989 47 H 0.045 0.955 48 H 0.249 0.751 49 H 0.063 0.937 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -5.022 -31.377 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.060 3.940 3 H 0.078 0.922 4 N -0.354 5.354 5 C 0.384 3.616 6 O -0.477 6.477 7 C -0.325 4.325 8 C -0.100 4.100 9 N -0.137 5.137 10 N -0.136 5.136 11 C 0.012 3.988 12 C -0.078 4.078 13 N -0.276 5.276 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.020 4.020 17 C -0.127 4.127 18 C 0.044 3.956 19 N -0.370 5.370 20 C -0.364 4.364 21 H 0.100 0.900 22 C -0.261 4.261 23 N -0.602 5.602 24 Si 0.806 3.194 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.191 1.191 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.231 0.769 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.043 0.957 44 H 0.221 0.779 45 H 0.125 0.875 46 H 0.029 0.971 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.379 -5.337 -32.350 32.873 hybrid contribution 0.908 0.935 2.379 2.713 sum 3.286 -4.402 -29.971 30.470 Atomic orbital electron populations 1.22040 0.94192 1.02960 1.01721 1.20710 0.94597 0.95838 0.82902 0.92171 1.45661 1.66800 1.14479 1.08493 1.17515 0.76055 0.85354 0.82718 1.90741 1.53700 1.17413 1.85858 1.20206 1.21411 0.95934 0.94941 1.24488 0.94990 0.95121 0.95353 1.77135 1.25333 1.05987 1.05213 1.48666 1.48246 1.06358 1.10336 1.21999 0.97370 1.05099 0.74359 1.22201 0.94586 1.02150 0.88821 1.61946 1.33084 1.15876 1.16704 1.22611 1.02198 0.86819 1.01904 1.22433 0.88318 0.99588 1.02090 1.23287 0.93265 0.96062 0.89365 1.23431 0.95911 1.00389 0.92983 1.22147 0.88167 0.93761 0.91521 1.46490 1.17028 1.72314 1.01202 1.19441 0.97274 1.35750 0.83984 0.89987 1.25633 0.98331 1.01453 1.00649 1.70018 1.18774 1.46996 1.24421 0.85068 0.77259 0.77898 0.79128 1.21760 1.21843 1.19090 1.22669 0.94971 0.98410 0.83670 0.92014 0.92866 0.90815 0.75167 0.76914 0.87787 0.85866 0.95010 0.90378 0.95553 0.90016 0.89941 0.91138 0.89786 0.95675 0.77864 0.87490 0.97144 0.93617 0.94244 0.91928 0.95198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.43 71.98 0.68 -3.47 16 2 C 0.17 5.02 2.28 44.99 0.10 5.12 16 3 H 0.06 2.20 7.49 -2.38 -0.02 2.18 16 4 N -0.70 -17.45 4.94 -445.81 -2.20 -19.65 16 5 C 0.59 16.35 7.78 86.67 0.67 17.03 16 6 O -0.59 -20.97 16.56 -4.05 -0.07 -21.04 16 7 C -0.31 -6.73 6.13 -20.15 -0.12 -6.86 16 8 C 0.09 1.62 11.50 85.65 0.99 2.61 16 9 N -0.32 -6.29 12.33 -56.28 -0.69 -6.99 16 10 N -0.36 -5.87 3.65 -346.30 -1.26 -7.13 16 11 C 0.13 1.37 6.41 86.38 0.55 1.92 16 12 C 0.05 0.62 5.13 86.30 0.44 1.06 16 13 N -0.55 -5.66 5.02 -948.85 -4.76 -10.42 16 14 C 0.01 0.09 9.32 127.69 1.19 1.28 16 15 C 0.02 0.21 9.57 127.69 1.22 1.43 16 16 C 0.13 2.40 11.25 84.28 0.95 3.34 16 17 C -0.11 -3.74 3.35 -10.14 -0.03 -3.78 16 18 C 0.17 8.10 7.02 86.44 0.61 8.71 16 19 N -0.64 -33.44 3.70 -716.07 -2.65 -36.09 16 20 C -0.24 -13.47 10.69 84.04 0.90 -12.57 16 21 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 23 N -0.95 -58.28 11.43 21.65 0.25 -58.03 16 24 Si 0.98 46.23 29.56 68.60 2.03 48.26 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 28 C 0.13 5.05 8.38 86.49 0.72 5.78 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.41 7.72 7.56 -92.71 -0.70 7.02 16 33 H 0.21 2.56 7.50 -2.91 -0.02 2.54 16 34 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.12 0.67 6.47 -2.39 -0.02 0.65 16 36 H 0.03 0.45 8.12 -2.38 -0.02 0.43 16 37 H 0.08 1.17 8.06 -2.39 -0.02 1.15 16 38 H 0.03 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.08 0.44 8.12 -2.38 -0.02 0.42 16 40 H 0.08 0.37 6.47 -2.39 -0.02 0.35 16 41 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 42 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 43 H 0.02 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.20 2.80 8.06 -2.91 -0.02 2.77 16 45 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.01 0.54 8.04 -2.38 -0.02 0.52 16 47 H 0.05 2.41 7.20 -2.39 -0.02 2.39 16 48 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 49 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.03 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -77.10 410.99 0.20 -76.90 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.22 Total: 16.04 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 9.34 Total: 18.15 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -11.33 Total: -138.31 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.07 Total: -21.04 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -77.10 0.20 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970556648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.376 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds