Wall clock time and date at job start Wed Apr 1 2020 00:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87149 * 2 1 4 4 C 1.54315 * 109.88508 * 121.01541 * 2 1 3 5 5 H 1.09005 * 110.72207 * 215.59089 * 4 2 1 6 6 N 1.46497 * 110.72358 * 338.86239 * 4 2 1 7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2 8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00382 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99790 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46773 * 90.00662 * 11 9 7 13 13 H 1.48497 * 109.47129 * 210.00112 * 11 9 7 14 14 H 1.48499 * 109.47224 * 330.00526 * 11 9 7 15 15 C 1.55156 * 102.94436 * 97.22518 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.87941 * 238.82754 * 2 1 3 18 18 C 1.34776 * 125.65312 * 59.58028 * 17 2 1 19 19 O 1.21572 * 119.99931 * 359.97438 * 18 17 2 20 20 C 1.47714 * 120.00278 * 180.02562 * 18 17 2 21 21 C 1.41496 * 126.52066 * 179.97438 * 20 18 17 22 22 C 1.35361 * 105.50497 * 179.97438 * 21 20 18 23 23 N 1.35036 * 107.22903 * 359.97438 * 22 21 20 24 24 C 1.46502 * 124.88341 * 180.02562 * 23 22 21 25 25 C 1.52997 * 109.47084 * 124.99996 * 24 23 22 26 26 N 1.46894 * 109.47257 * 180.02562 * 25 24 23 27 27 C 1.46894 * 111.00513 * 66.04341 * 26 25 24 28 28 C 1.46904 * 111.00190 * 190.00139 * 26 25 24 29 29 N 1.28465 * 110.22941 * 359.72263 * 23 22 21 30 30 H 1.09004 * 109.47271 * 298.98374 * 1 2 3 31 31 H 1.08999 * 109.47439 * 58.98369 * 1 2 3 32 32 H 1.09000 * 109.46977 * 178.98918 * 1 2 3 33 33 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 34 34 H 0.96997 * 120.00558 * 179.97438 * 10 9 7 35 35 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 36 36 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 37 37 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 38 38 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 39 39 H 1.08007 * 127.24708 * 359.97438 * 21 20 18 40 40 H 1.08003 * 126.38137 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.46686 * 244.99609 * 24 23 22 42 42 H 1.09002 * 109.47088 * 5.00036 * 24 23 22 43 43 H 1.09000 * 109.47141 * 299.99941 * 25 24 23 44 44 H 1.09000 * 109.47460 * 59.99647 * 25 24 23 45 45 H 1.09000 * 109.46955 * 60.00055 * 27 26 25 46 46 H 1.08996 * 109.47305 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.46854 * 300.00605 * 27 26 25 48 48 H 1.09002 * 109.46893 * 59.99627 * 28 26 25 49 49 H 1.08992 * 109.47135 * 179.97438 * 28 26 25 50 50 H 1.08999 * 109.46818 * 299.99634 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9657 -0.2808 1.6186 6 7 1.0294 -0.7994 2.2886 7 6 1.3879 -1.0366 3.5888 8 1 2.4267 -1.1859 3.8438 9 6 0.4161 -1.0861 4.5787 10 7 0.7607 -1.3145 5.8283 11 14 -1.3807 -0.8285 4.1375 12 1 -2.0022 -2.1367 3.8092 13 1 -2.0909 -0.2185 5.2901 14 1 -1.4774 0.0743 2.9624 15 6 2.3519 -2.1685 0.6954 16 6 2.8564 -1.8517 -0.7346 17 7 2.0299 -0.7156 -1.1829 18 6 1.7756 -0.3876 -2.4652 19 8 1.0774 0.5746 -2.7195 20 6 2.3442 -1.1978 -3.5616 21 6 2.1674 -0.9803 -4.9485 22 6 2.8682 -1.9630 -5.5612 23 7 3.4282 -2.7187 -4.5922 24 6 4.2729 -3.8922 -4.8279 25 6 5.6102 -3.7110 -4.1072 26 7 6.4575 -4.8874 -4.3440 27 6 6.8346 -4.9882 -5.7601 28 6 7.6474 -4.8611 -3.4830 29 7 3.1188 -2.2567 -3.4341 30 1 -0.3634 0.4980 0.8990 31 1 -0.3634 0.5295 -0.8807 32 1 -0.3633 -1.0275 -0.0181 33 1 0.0963 -0.6656 2.0595 34 1 0.0817 -1.3487 6.5201 35 1 3.1271 -2.6600 1.2833 36 1 1.4454 -2.7729 0.6649 37 1 3.9089 -1.5690 -0.7116 38 1 2.7079 -2.7111 -1.3884 39 1 1.5940 -0.1953 -5.4192 40 1 2.9619 -2.1145 -6.6264 41 1 3.7725 -4.7824 -4.4469 42 1 4.4490 -4.0042 -5.8978 43 1 6.1106 -2.8207 -4.4882 44 1 5.4342 -3.5990 -3.0373 45 1 7.3865 -4.0952 -6.0536 46 1 7.4611 -5.8678 -5.9076 47 1 5.9355 -5.0764 -6.3701 48 1 7.3393 -4.8570 -2.4374 49 1 8.2568 -5.7434 -3.6784 50 1 8.2288 -3.9636 -3.6939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986302266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:17 Heat of formation + Delta-G solvation = 91.699977 kcal Electronic energy + Delta-G solvation = -29539.521844 eV Core-core repulsion = 25605.170365 eV Total energy + Delta-G solvation = -3934.351479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = -1.15 seconds Orbital eigenvalues (eV) -42.83433 -39.80827 -38.22563 -37.41308 -34.31225 -33.90342 -31.82108 -30.88907 -30.72920 -29.83335 -28.96130 -28.14743 -25.57138 -25.37532 -23.74272 -22.76505 -22.06479 -21.75539 -21.10353 -19.63671 -18.73320 -17.90407 -17.60002 -16.83436 -16.48714 -16.00736 -15.67426 -15.51494 -15.25696 -14.88643 -14.43594 -14.25234 -14.10160 -13.85084 -13.57199 -13.30871 -13.23716 -12.97445 -12.84930 -12.57928 -12.53076 -12.22388 -12.14292 -12.09247 -11.91722 -11.69892 -11.59002 -11.32872 -11.15680 -10.91377 -10.72168 -10.46372 -10.23539 -10.02730 -9.80503 -9.52576 -9.42162 -9.23685 -8.99780 -8.92326 -8.36239 -7.28521 -5.78137 -3.14314 1.52679 1.99983 2.10857 3.15228 3.38109 3.41355 3.43809 3.46542 3.52764 3.95951 4.32148 4.45489 4.53483 4.58595 4.60703 4.71033 4.77622 4.89089 5.01670 5.04778 5.10628 5.20538 5.25096 5.30241 5.32204 5.39042 5.45447 5.50409 5.55536 5.59654 5.61378 5.69548 5.81800 5.96481 6.02609 6.11746 6.23940 6.31251 6.33383 6.37497 6.47805 6.55331 6.59540 6.66605 6.72605 6.93031 7.68200 7.80148 7.97839 8.36946 8.40893 9.18760 9.91113 10.10467 11.39910 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014326 B = 0.002778 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.962713 B =10075.844878 C =11616.916058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.179 3.821 5 H 0.071 0.929 6 N -0.742 5.742 7 C -0.245 4.245 8 H 0.092 0.908 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.878 3.122 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.275 1.275 15 C -0.153 4.153 16 C 0.103 3.897 17 N -0.596 5.596 18 C 0.613 3.387 19 O -0.538 6.538 20 C -0.006 4.006 21 C -0.179 4.179 22 C -0.021 4.021 23 N -0.286 5.286 24 C 0.125 3.875 25 C 0.042 3.958 26 N -0.544 5.544 27 C 0.016 3.984 28 C 0.025 3.975 29 N -0.252 5.252 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.368 0.632 34 H 0.260 0.740 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.161 0.839 40 H 0.179 0.821 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.042 0.958 44 H 0.096 0.904 45 H 0.028 0.972 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -7.037 -27.636 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.094 0.906 4 C 0.068 3.932 5 H 0.089 0.911 6 N -0.387 5.387 7 C -0.375 4.375 8 H 0.109 0.891 9 C -0.189 4.189 10 N -0.579 5.579 11 Si 0.708 3.292 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.194 4.194 16 C -0.020 4.020 17 N -0.329 5.329 18 C 0.400 3.600 19 O -0.414 6.414 20 C -0.167 4.167 21 C -0.207 4.207 22 C -0.163 4.163 23 N -0.074 5.074 24 C 0.004 3.996 25 C -0.087 4.087 26 N -0.268 5.268 27 C -0.133 4.133 28 C -0.123 4.123 29 N -0.088 5.088 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.204 0.796 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.179 0.821 40 H 0.197 0.803 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.061 0.939 44 H 0.115 0.885 45 H 0.047 0.953 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.091 0.909 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.976 -7.736 -26.699 30.267 hybrid contribution -1.106 1.192 -1.107 1.967 sum 10.871 -6.543 -27.806 30.564 Atomic orbital electron populations 1.22100 0.95114 1.02348 1.02735 1.21835 0.95015 0.96101 0.84630 0.90559 1.21152 0.92889 0.92521 0.86613 0.91061 1.42983 1.04324 1.86942 1.04420 1.19059 0.95343 1.41129 0.81948 0.89058 1.24640 0.97348 1.01689 0.95174 1.69688 1.32668 1.55965 0.99621 0.86663 0.86908 0.78133 0.77457 1.20991 1.21609 1.20108 1.23520 1.01852 1.00594 0.93448 1.22512 0.94068 0.88940 0.96524 1.48387 1.49646 1.30424 1.04407 1.16516 0.80090 0.83212 0.80201 1.90767 1.39107 1.28448 1.83121 1.21970 1.03016 0.97019 0.94659 1.21760 1.05029 1.01904 0.92015 1.22830 1.02009 0.95241 0.96263 1.45560 1.36078 1.22576 1.03201 1.21952 0.90306 0.85258 1.02067 1.22361 0.92016 0.91612 1.02684 1.61886 1.19244 1.39605 1.06097 1.22527 1.01031 1.01191 0.88516 1.22406 0.91082 1.00919 0.97914 1.73660 1.15650 1.12001 1.07507 0.90820 0.91517 0.92519 0.79586 0.93007 0.90236 0.90889 0.91865 0.89549 0.82103 0.80342 0.87853 0.88074 0.93939 0.88538 0.95302 0.90835 0.91224 0.90654 0.90873 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 7.95 37.16 0.30 -2.74 16 2 C 0.13 2.29 3.48 -66.96 -0.23 2.05 16 3 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 4 C 0.18 3.45 3.46 -66.10 -0.23 3.22 16 5 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 6 N -0.74 -17.35 4.82 -51.66 -0.25 -17.60 16 7 C -0.25 -6.78 10.46 -15.06 -0.16 -6.93 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 10 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 11 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 14 H -0.27 -6.53 6.45 56.52 0.36 -6.16 16 15 C -0.15 -2.59 6.77 -24.58 -0.17 -2.75 16 16 C 0.10 1.51 6.15 -2.50 -0.02 1.49 16 17 N -0.60 -9.86 3.08 -164.14 -0.51 -10.36 16 18 C 0.61 10.43 7.64 -12.39 -0.09 10.34 16 19 O -0.54 -10.45 15.83 5.30 0.08 -10.36 16 20 C -0.01 -0.09 6.97 -82.76 -0.58 -0.67 16 21 C -0.18 -2.07 10.81 -39.37 -0.43 -2.49 16 22 C -0.02 -0.18 11.40 -17.17 -0.20 -0.37 16 23 N -0.29 -2.65 3.41 -61.33 -0.21 -2.86 16 24 C 0.12 0.76 6.32 -4.04 -0.03 0.74 16 25 C 0.04 0.29 5.06 -3.83 -0.02 0.27 16 26 N -0.54 -3.35 5.02 -251.27 -1.26 -4.62 16 27 C 0.02 0.07 9.32 60.06 0.56 0.63 16 28 C 0.02 0.14 9.57 60.07 0.57 0.72 16 29 N -0.25 -3.14 8.78 33.42 0.29 -2.84 16 30 H 0.07 1.42 6.60 -51.93 -0.34 1.08 16 31 H 0.07 1.23 6.77 -51.93 -0.35 0.87 16 32 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.37 8.54 2.79 -40.82 -0.11 8.43 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.09 1.22 6.21 -51.93 -0.32 0.90 16 39 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.18 0.77 8.06 -52.48 -0.42 0.34 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.34 6.45 -51.93 -0.34 0.01 16 43 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 44 H 0.10 0.81 8.00 -51.93 -0.42 0.40 16 45 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 47 H 0.07 0.21 6.47 -51.93 -0.34 -0.12 16 48 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 49 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 50 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -34.09 395.63 -8.77 -42.86 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.15 Total: 7.06 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.80 Total: 3.61 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -1.16 Total: -66.54 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.09 -8.77 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986302266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.564 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.15 seconds