Wall clock time and date at job start Wed Apr 1 2020 00:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.53006 * 109.46817 * 120.00187 * 2 1 3 5 5 C 1.53001 * 109.46626 * 175.00066 * 4 2 1 6 6 N 1.46502 * 109.47145 * 179.97438 * 5 4 2 7 7 C 1.34818 * 126.59706 * 125.26737 * 6 5 4 8 8 C 1.36591 * 106.83589 * 180.11035 * 7 6 5 9 9 C 1.47529 * 125.76535 * 179.90088 * 8 7 6 10 10 O 1.21592 * 120.00039 * 359.71758 * 9 8 7 11 11 N 1.34777 * 120.00066 * 179.71536 * 9 8 7 12 12 C 1.47429 * 125.64684 * 0.04457 * 11 9 8 13 13 C 1.54906 * 104.83044 * 204.09161 * 12 11 9 14 14 C 1.55150 * 101.58255 * 322.98719 * 13 12 11 15 15 H 1.09001 * 110.87634 * 277.07295 * 14 13 12 16 16 N 1.46505 * 110.72044 * 153.86571 * 14 13 12 17 17 C 1.36931 * 119.99788 * 91.47904 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.47019 * 125.64806 * 179.97438 * 11 9 8 26 26 H 1.08993 * 110.01157 * 298.46695 * 25 11 9 27 27 C 1.53000 * 109.88069 * 59.56206 * 25 11 9 28 28 N 1.34396 * 108.46251 * 359.63912 * 8 7 6 29 29 N 1.28754 * 109.52275 * 0.22265 * 28 8 7 30 30 H 1.09005 * 109.46959 * 299.99653 * 1 2 3 31 31 H 1.09000 * 109.47206 * 59.99691 * 1 2 3 32 32 H 1.08997 * 109.47502 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46951 * 239.99812 * 2 1 3 34 34 H 1.09005 * 109.46883 * 60.00300 * 3 2 1 35 35 H 1.08995 * 109.47110 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47295 * 300.00255 * 3 2 1 37 37 H 1.08990 * 109.47104 * 55.00035 * 4 2 1 38 38 H 1.09001 * 109.47143 * 294.99594 * 4 2 1 39 39 H 1.09003 * 109.47644 * 60.00061 * 5 4 2 40 40 H 1.09001 * 109.46974 * 299.99631 * 5 4 2 41 41 H 1.08001 * 126.57718 * 359.97346 * 7 6 5 42 42 H 1.09004 * 110.36263 * 322.92750 * 12 11 9 43 43 H 1.08994 * 110.36854 * 85.13808 * 12 11 9 44 44 H 1.09000 * 111.00550 * 204.91393 * 13 12 11 45 45 H 1.09000 * 111.00625 * 81.06327 * 13 12 11 46 46 H 0.97000 * 119.99792 * 271.47699 * 16 14 13 47 47 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.46741 * 177.80599 * 27 25 11 49 49 H 1.08992 * 109.46874 * 297.80799 * 27 25 11 50 50 H 1.08999 * 109.46961 * 57.81039 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 7 4.0533 -1.5212 2.3844 7 6 4.8356 -2.6187 2.4162 8 6 5.0427 -2.9190 3.7325 9 6 5.8425 -4.0483 4.2438 10 8 6.3824 -4.8119 3.4668 11 7 5.9749 -4.2334 5.5722 12 6 5.3764 -3.3881 6.6214 13 6 6.2772 -3.6005 7.8635 14 6 6.6274 -5.1069 7.7405 15 1 5.8320 -5.7258 8.1556 16 7 7.9042 -5.3976 8.3975 17 6 7.9263 -5.7788 9.7125 18 1 7.0025 -5.8656 10.2652 19 6 9.1357 -6.0598 10.3334 20 7 10.2614 -5.9545 9.6597 21 14 9.1653 -6.5873 12.1251 22 1 8.3803 -7.8376 12.2861 23 1 10.5687 -6.8255 12.5479 24 1 8.5703 -5.5176 12.9660 25 6 6.7388 -5.3126 6.2150 26 1 6.3205 -6.2807 5.9398 27 6 8.2055 -5.2388 5.7858 28 7 4.3993 -2.0085 4.4830 29 7 3.8016 -1.1640 3.7167 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6054 -1.7198 1.2951 38 1 1.7516 -0.1584 2.1370 39 1 3.9995 0.1675 1.1421 40 1 3.8531 -1.3940 0.3002 41 1 5.2223 -3.1583 1.5643 42 1 5.3890 -2.3412 6.3181 43 1 4.3561 -3.7092 6.8312 44 1 5.7277 -3.4010 8.7835 45 1 7.1747 -2.9847 7.8052 46 1 8.7339 -5.3200 7.9009 47 1 11.1065 -6.1505 10.0937 48 1 8.7729 -6.0172 6.2961 49 1 8.2765 -5.3847 4.7081 50 1 8.6120 -4.2620 6.0479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986961759.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:20 Heat of formation + Delta-G solvation = 73.017459 kcal Electronic energy + Delta-G solvation = -28825.283634 eV Core-core repulsion = 24890.122020 eV Total energy + Delta-G solvation = -3935.161614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.34602 -39.70226 -37.76943 -37.31431 -34.64489 -34.02860 -31.75436 -31.08631 -30.56749 -29.83112 -28.60900 -27.75193 -25.20453 -24.94623 -24.20956 -23.12051 -22.11846 -21.87088 -20.62059 -19.82974 -18.73675 -17.69414 -17.31536 -16.65170 -16.33080 -15.77337 -15.50342 -15.23230 -14.91998 -14.59059 -14.57453 -14.23007 -14.08255 -13.62523 -13.46793 -13.30706 -12.90626 -12.80673 -12.60620 -12.43980 -12.33479 -12.08863 -11.93040 -11.74621 -11.64014 -11.56722 -11.37011 -11.24647 -11.19888 -10.98599 -10.90264 -10.68729 -10.48667 -10.35388 -10.16020 -9.93124 -9.77620 -9.56803 -9.38982 -8.88093 -8.28098 -6.96498 -5.76562 -3.05784 0.98628 1.70655 1.79089 3.17885 3.42095 3.45673 3.50260 3.51094 3.85353 4.07794 4.12516 4.28736 4.34727 4.56244 4.59990 4.60277 4.72652 4.81278 5.00365 5.02895 5.09671 5.21061 5.25343 5.28327 5.32620 5.37343 5.39233 5.49653 5.59797 5.65561 5.69757 5.70546 5.73192 5.78030 5.86833 6.00718 6.14802 6.19664 6.29162 6.34021 6.47387 6.64449 6.70641 6.81882 6.90911 7.07699 7.71082 7.76481 7.86413 8.35915 8.42264 9.53562 10.09247 10.44584 11.45879 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033271 B = 0.001949 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.361741 B =14360.366396 C =14783.110102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.362 5.362 7 C 0.088 3.912 8 C -0.090 4.090 9 C 0.612 3.388 10 O -0.545 6.545 11 N -0.592 5.592 12 C 0.100 3.900 13 C -0.155 4.155 14 C 0.173 3.827 15 H 0.066 0.934 16 N -0.716 5.716 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.128 3.872 26 H 0.073 0.927 27 C -0.159 4.159 28 N -0.200 5.200 29 N -0.069 5.069 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.203 0.797 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.391 0.609 47 H 0.256 0.744 48 H 0.081 0.919 49 H 0.060 0.940 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.743 13.134 -22.291 31.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.211 4.211 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.147 5.147 7 C -0.068 4.068 8 C -0.229 4.229 9 C 0.398 3.602 10 O -0.423 6.423 11 N -0.323 5.323 12 C -0.023 4.023 13 C -0.196 4.196 14 C 0.061 3.939 15 H 0.084 0.916 16 N -0.359 5.359 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.024 3.976 26 H 0.091 0.909 27 C -0.217 4.217 28 N -0.073 5.073 29 N -0.049 5.049 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.220 0.780 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.229 0.771 47 H 0.066 0.934 48 H 0.100 0.900 49 H 0.079 0.921 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.162 13.673 -21.689 31.420 hybrid contribution 0.739 -0.758 0.080 1.062 sum -17.423 12.915 -21.609 30.615 Atomic orbital electron populations 1.21827 0.94467 1.02060 1.02183 1.21063 0.96492 0.96414 0.97218 1.21956 1.01045 0.95746 1.02398 1.21979 0.92436 1.02344 0.99993 1.22178 0.96501 0.98577 0.82851 1.50541 1.34816 1.20397 1.08974 1.23345 0.93973 0.89483 1.00034 1.21510 1.09166 1.01870 0.90379 1.16356 0.79829 0.82687 0.81293 1.90779 1.49297 1.46280 1.55931 1.48348 1.49763 1.29917 1.04311 1.22554 0.96561 0.95735 0.87480 1.23564 0.99280 1.00890 0.95851 1.21203 0.90985 0.93179 0.88519 0.91588 1.42648 1.02236 1.80825 1.10219 1.19220 0.92845 1.38067 0.87277 0.91089 1.24748 0.95376 1.02354 0.98284 1.69651 0.97022 1.55244 1.36049 0.86248 0.76467 0.78461 0.84867 1.21256 1.21746 1.21264 1.21924 0.92292 0.89139 0.94207 0.90900 1.22012 0.95236 1.02966 1.01464 1.74758 1.05431 1.00975 1.26160 1.81971 1.20868 1.19419 0.82603 0.92366 0.92329 0.92520 0.90777 0.92188 0.92494 0.92329 0.90910 0.89833 0.88231 0.87824 0.78014 0.89444 0.91762 0.90610 0.90855 0.77149 0.93397 0.90046 0.92146 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.19 37.16 0.34 -0.23 16 2 C -0.09 -0.32 2.92 -90.61 -0.26 -0.59 16 3 C -0.15 -0.52 8.95 37.16 0.33 -0.19 16 4 C -0.13 -0.63 4.89 -26.73 -0.13 -0.76 16 5 C 0.12 0.58 6.29 -4.04 -0.03 0.56 16 6 N -0.36 -3.34 3.69 -61.06 -0.23 -3.56 16 7 C 0.09 0.91 11.27 -16.83 -0.19 0.72 16 8 C -0.09 -1.26 6.84 -83.55 -0.57 -1.84 16 9 C 0.61 10.27 7.63 -12.47 -0.10 10.17 16 10 O -0.55 -10.14 15.77 5.28 0.08 -10.06 16 11 N -0.59 -10.10 3.08 -164.23 -0.51 -10.61 16 12 C 0.10 1.57 6.12 -2.53 -0.02 1.55 16 13 C -0.15 -2.75 6.77 -24.59 -0.17 -2.92 16 14 C 0.17 3.47 3.49 -66.09 -0.23 3.24 16 15 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 16 N -0.72 -17.67 4.94 -51.65 -0.25 -17.93 16 17 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.13 2.38 3.48 -66.95 -0.23 2.15 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 C -0.16 -3.08 7.93 37.16 0.29 -2.78 16 28 N -0.20 -2.86 9.39 32.85 0.31 -2.55 16 29 N -0.07 -0.86 13.65 60.35 0.82 -0.04 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.17 6.56 -51.93 -0.34 -0.18 16 36 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.40 6.56 -51.93 -0.34 0.06 16 40 H 0.10 0.24 8.08 -51.93 -0.42 -0.18 16 41 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.09 1.35 6.13 -51.93 -0.32 1.03 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.39 10.17 5.06 -40.82 -0.21 9.96 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.08 1.70 6.77 -51.93 -0.35 1.35 16 49 H 0.06 1.15 6.76 -51.93 -0.35 0.80 16 50 H 0.06 1.11 8.03 -51.93 -0.42 0.70 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -32.90 399.63 -7.45 -40.36 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.21 Total: 6.40 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.20 Total: 1.90 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.87 Total: -61.83 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.90 -7.45 -40.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986961759.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.376 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds