Wall clock time and date at job start Wed Apr 1 2020 00:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.53006 * 109.46817 * 120.00187 * 2 1 3 5 5 C 1.53001 * 109.46626 * 175.00066 * 4 2 1 6 6 N 1.46502 * 109.47145 * 179.97438 * 5 4 2 7 7 C 1.34818 * 126.59706 * 125.26737 * 6 5 4 8 8 C 1.36591 * 106.83589 * 180.11035 * 7 6 5 9 9 C 1.47529 * 125.76535 * 179.90088 * 8 7 6 10 10 O 1.21592 * 120.00039 * 359.71758 * 9 8 7 11 11 N 1.34777 * 120.00066 * 179.71536 * 9 8 7 12 12 C 1.47429 * 125.64684 * 0.04457 * 11 9 8 13 13 C 1.54906 * 104.83044 * 204.09161 * 12 11 9 14 14 C 1.55150 * 101.58255 * 322.98719 * 13 12 11 15 15 H 1.09001 * 110.87634 * 277.07295 * 14 13 12 16 16 N 1.46505 * 110.72044 * 153.86571 * 14 13 12 17 17 C 1.36931 * 119.99788 * 91.47904 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.47019 * 125.64806 * 179.97438 * 11 9 8 26 26 H 1.08993 * 110.01157 * 298.46695 * 25 11 9 27 27 C 1.53000 * 109.88069 * 59.56206 * 25 11 9 28 28 N 1.34396 * 108.46251 * 359.63912 * 8 7 6 29 29 N 1.28754 * 109.52275 * 0.22265 * 28 8 7 30 30 H 1.09005 * 109.46959 * 299.99653 * 1 2 3 31 31 H 1.09000 * 109.47206 * 59.99691 * 1 2 3 32 32 H 1.08997 * 109.47502 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46951 * 239.99812 * 2 1 3 34 34 H 1.09005 * 109.46883 * 60.00300 * 3 2 1 35 35 H 1.08995 * 109.47110 * 179.97438 * 3 2 1 36 36 H 1.09000 * 109.47295 * 300.00255 * 3 2 1 37 37 H 1.08990 * 109.47104 * 55.00035 * 4 2 1 38 38 H 1.09001 * 109.47143 * 294.99594 * 4 2 1 39 39 H 1.09003 * 109.47644 * 60.00061 * 5 4 2 40 40 H 1.09001 * 109.46974 * 299.99631 * 5 4 2 41 41 H 1.08001 * 126.57718 * 359.97346 * 7 6 5 42 42 H 1.09004 * 110.36263 * 322.92750 * 12 11 9 43 43 H 1.08994 * 110.36854 * 85.13808 * 12 11 9 44 44 H 1.09000 * 111.00550 * 204.91393 * 13 12 11 45 45 H 1.09000 * 111.00625 * 81.06327 * 13 12 11 46 46 H 0.97000 * 119.99792 * 271.47699 * 16 14 13 47 47 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.46741 * 177.80599 * 27 25 11 49 49 H 1.08992 * 109.46874 * 297.80799 * 27 25 11 50 50 H 1.08999 * 109.46961 * 57.81039 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 7 4.0533 -1.5212 2.3844 7 6 4.8356 -2.6187 2.4162 8 6 5.0427 -2.9190 3.7325 9 6 5.8425 -4.0483 4.2438 10 8 6.3824 -4.8119 3.4668 11 7 5.9749 -4.2334 5.5722 12 6 5.3764 -3.3881 6.6214 13 6 6.2772 -3.6005 7.8635 14 6 6.6274 -5.1069 7.7405 15 1 5.8320 -5.7258 8.1556 16 7 7.9042 -5.3976 8.3975 17 6 7.9263 -5.7788 9.7125 18 1 7.0025 -5.8656 10.2652 19 6 9.1357 -6.0598 10.3334 20 7 10.2614 -5.9545 9.6597 21 14 9.1653 -6.5873 12.1251 22 1 8.3803 -7.8376 12.2861 23 1 10.5687 -6.8255 12.5479 24 1 8.5703 -5.5176 12.9660 25 6 6.7388 -5.3126 6.2150 26 1 6.3205 -6.2807 5.9398 27 6 8.2055 -5.2388 5.7858 28 7 4.3993 -2.0085 4.4830 29 7 3.8016 -1.1640 3.7167 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6054 -1.7198 1.2951 38 1 1.7516 -0.1584 2.1370 39 1 3.9995 0.1675 1.1421 40 1 3.8531 -1.3940 0.3002 41 1 5.2223 -3.1583 1.5643 42 1 5.3890 -2.3412 6.3181 43 1 4.3561 -3.7092 6.8312 44 1 5.7277 -3.4010 8.7835 45 1 7.1747 -2.9847 7.8052 46 1 8.7339 -5.3200 7.9009 47 1 11.1065 -6.1505 10.0937 48 1 8.7729 -6.0172 6.2961 49 1 8.2765 -5.3847 4.7081 50 1 8.6120 -4.2620 6.0479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986961759.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:19 Heat of formation + Delta-G solvation = 52.601727 kcal Electronic energy + Delta-G solvation = -28826.168926 eV Core-core repulsion = 24890.122020 eV Total energy + Delta-G solvation = -3936.046906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.24791 -41.08450 -38.81473 -38.12386 -35.95655 -35.20766 -33.46447 -32.25578 -31.91719 -30.85467 -29.95907 -28.02211 -26.76539 -25.85757 -25.45866 -24.75986 -23.22847 -22.74532 -21.28650 -20.81412 -20.11187 -19.43996 -18.61768 -17.43210 -17.37398 -16.91908 -16.73499 -16.35995 -16.06664 -15.73715 -15.64676 -15.28236 -15.01174 -14.75238 -14.69513 -14.47018 -13.99053 -13.90775 -13.68187 -13.32213 -13.30639 -13.11815 -13.08719 -12.88250 -12.83512 -12.77461 -12.67254 -12.43810 -12.09677 -12.07302 -12.02125 -11.99264 -11.69044 -11.57714 -11.52949 -11.47750 -11.14446 -11.08662 -10.87185 -10.34734 -9.65302 -8.98861 -7.90889 -5.19814 0.15799 0.62860 1.10218 1.51097 1.53834 1.59639 1.90257 2.22078 2.60027 3.11558 3.30793 3.41042 3.65293 3.75614 3.78668 3.86233 3.93858 3.98387 3.99725 4.02967 4.23279 4.27256 4.34667 4.38758 4.44098 4.44944 4.54309 4.60369 4.70441 4.74863 4.81107 4.88449 4.89371 4.97422 5.01271 5.05274 5.08656 5.10724 5.21990 5.28735 5.30862 5.35534 5.41557 5.47384 5.50297 5.52196 5.57058 6.30230 6.48412 6.83844 7.10348 7.37813 8.10672 8.35677 9.32395 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.033271 B = 0.001949 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.361741 B =14360.366396 C =14783.110102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.155 4.155 4 C -0.124 4.124 5 C 0.110 3.890 6 N -0.346 5.346 7 C 0.112 3.888 8 C -0.121 4.121 9 C 0.612 3.388 10 O -0.568 6.568 11 N -0.597 5.597 12 C 0.114 3.886 13 C -0.145 4.145 14 C 0.167 3.833 15 H 0.072 0.928 16 N -0.729 5.729 17 C -0.241 4.241 18 H 0.081 0.919 19 C -0.075 4.075 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.278 1.278 25 C 0.135 3.865 26 H 0.073 0.927 27 C -0.144 4.144 28 N -0.221 5.221 29 N -0.086 5.086 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.237 0.763 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.381 0.619 47 H 0.250 0.750 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.459 13.943 -23.914 33.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.212 4.212 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.131 5.131 7 C -0.047 4.047 8 C -0.261 4.261 9 C 0.400 3.600 10 O -0.448 6.448 11 N -0.328 5.328 12 C -0.009 4.009 13 C -0.186 4.186 14 C 0.057 3.943 15 H 0.090 0.910 16 N -0.371 5.371 17 C -0.372 4.372 18 H 0.098 0.902 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.204 1.204 25 C 0.031 3.969 26 H 0.091 0.909 27 C -0.202 4.202 28 N -0.094 5.094 29 N -0.066 5.066 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.158 0.842 41 H 0.253 0.747 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.217 0.783 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.961 14.529 -23.331 33.969 hybrid contribution 1.157 -0.932 0.417 1.543 sum -18.804 13.598 -22.914 32.612 Atomic orbital electron populations 1.21848 0.94944 1.01911 1.02067 1.21029 0.96047 0.96419 0.97019 1.21968 1.01562 0.95589 1.02119 1.21909 0.92487 1.01843 0.99956 1.22676 0.96365 0.99637 0.82211 1.50823 1.33498 1.19767 1.08997 1.23793 0.92365 0.88920 0.99574 1.21291 1.10809 1.02031 0.91935 1.16701 0.79515 0.83048 0.80713 1.90754 1.50386 1.47359 1.56293 1.48357 1.49872 1.29641 1.04951 1.22487 0.96524 0.95967 0.85900 1.23388 0.99122 0.98471 0.97581 1.21376 0.89179 0.94633 0.89131 0.91050 1.42797 1.03508 1.81064 1.09754 1.19636 0.93060 1.36213 0.88329 0.90156 1.25548 0.95218 1.03614 1.02320 1.69818 0.97319 1.57294 1.37568 0.85205 0.75925 0.78327 0.80236 1.20427 1.22550 1.20407 1.21685 0.91931 0.89934 0.93395 0.90892 1.21832 0.95679 1.01512 1.01190 1.74701 1.06043 1.01435 1.27225 1.81896 1.21136 1.19417 0.84134 0.93251 0.91727 0.92691 0.89147 0.93246 0.91666 0.91892 0.91517 0.91726 0.86916 0.84179 0.74684 0.88847 0.90180 0.89513 0.92672 0.78297 0.94116 0.92040 0.91898 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 71.98 0.66 -0.27 16 2 C -0.09 -0.39 2.92 -10.79 -0.03 -0.42 16 3 C -0.16 -0.72 8.95 71.98 0.64 -0.08 16 4 C -0.12 -0.93 4.89 30.60 0.15 -0.78 16 5 C 0.11 0.69 6.29 86.38 0.54 1.24 16 6 N -0.35 -5.44 3.69 -347.09 -1.28 -6.72 16 7 C 0.11 1.98 11.27 83.85 0.95 2.93 16 8 C -0.12 -3.21 6.84 40.82 0.28 -2.93 16 9 C 0.61 19.97 7.63 86.69 0.66 20.63 16 10 O -0.57 -20.66 15.77 -4.01 -0.06 -20.72 16 11 N -0.60 -20.02 3.08 -791.77 -2.44 -22.46 16 12 C 0.11 3.46 6.12 86.85 0.53 3.99 16 13 C -0.14 -5.07 6.77 31.98 0.22 -4.86 16 14 C 0.17 6.67 3.49 46.18 0.16 6.83 16 15 H 0.07 2.78 8.09 -2.39 -0.02 2.76 16 16 N -0.73 -36.50 4.94 -317.31 -1.57 -38.07 16 17 C -0.24 -13.15 9.96 84.04 0.84 -12.31 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 19 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 20 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 21 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 C 0.13 5.03 3.48 45.35 0.16 5.18 16 26 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 27 C -0.14 -5.72 7.93 71.98 0.57 -5.15 16 28 N -0.22 -6.05 9.39 -50.00 -0.47 -6.52 16 29 N -0.09 -2.02 13.65 37.02 0.51 -1.51 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.16 8.14 -2.39 -0.02 0.15 16 34 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.06 0.20 6.56 -2.39 -0.02 0.18 16 36 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.52 6.56 -2.39 -0.02 0.50 16 40 H 0.14 -0.04 8.08 -2.39 -0.02 -0.06 16 41 H 0.24 2.42 8.06 -2.91 -0.02 2.40 16 42 H 0.09 2.80 6.13 -2.38 -0.01 2.79 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.38 20.46 5.06 -92.71 -0.47 19.99 16 47 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 48 H 0.06 2.68 6.77 -2.39 -0.02 2.66 16 49 H 0.06 2.43 6.76 -2.39 -0.02 2.42 16 50 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -71.98 399.63 4.26 -67.73 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.47 Total: 29.06 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.80 Total: 10.20 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -4.97 Total: -134.33 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.06 Total: -20.72 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -71.98 4.26 -67.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986961759.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.327 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds