Wall clock time and date at job start Wed Apr 1 2020 00:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21575 * 119.99558 * 0.02562 * 18 17 2 20 20 C 1.47706 * 120.00325 * 179.97438 * 18 17 2 21 21 C 1.41500 * 126.51601 * 179.97438 * 20 18 17 22 22 C 1.35367 * 105.50138 * 180.02562 * 21 20 18 23 23 N 1.35023 * 107.22857 * 359.97438 * 22 21 20 24 24 C 1.46504 * 124.88700 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.47208 * 124.99907 * 24 23 22 26 26 N 1.46901 * 109.46857 * 180.02562 * 25 24 23 27 27 C 1.46892 * 111.00089 * 66.04679 * 26 25 24 28 28 C 1.46904 * 110.99860 * 190.00290 * 26 25 24 29 29 N 1.28473 * 110.23419 * 359.72872 * 23 22 21 30 30 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 31 31 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 32 32 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 33 33 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 34 34 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 35 35 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 36 36 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 37 37 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 38 38 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 39 39 H 1.08000 * 127.25275 * 0.02562 * 21 20 18 40 40 H 1.08003 * 126.38554 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.47285 * 245.00511 * 24 23 22 42 42 H 1.09006 * 109.46785 * 5.00052 * 24 23 22 43 43 H 1.08998 * 109.47192 * 300.00063 * 25 24 23 44 44 H 1.08996 * 109.47083 * 60.00309 * 25 24 23 45 45 H 1.09005 * 109.47188 * 60.00245 * 27 26 25 46 46 H 1.09008 * 109.47507 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47251 * 299.99899 * 27 26 25 48 48 H 1.09004 * 109.47096 * 59.99417 * 28 26 25 49 49 H 1.09000 * 109.47152 * 179.97438 * 28 26 25 50 50 H 1.09001 * 109.46902 * 300.00215 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.7159 -1.8786 -1.9769 14 1 9.5658 -0.0374 -0.6477 15 1 8.7310 -2.0364 0.4429 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1438 0.6248 2.7186 20 6 2.3729 -1.1728 3.5633 21 6 2.2284 -0.9305 4.9499 22 6 2.9105 -1.9255 5.5640 23 7 3.4284 -2.7119 4.5962 24 6 4.2405 -3.9080 4.8335 25 6 3.6114 -5.1026 4.1136 26 7 4.4254 -6.3020 4.3521 27 6 4.3898 -6.6892 5.7686 28 6 3.9926 -7.4114 3.4919 29 7 3.1016 -2.2639 3.4373 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8799 32 1 -0.3632 0.4966 -0.8997 33 1 2.3530 -0.0461 -2.0200 34 1 1.3051 -1.4460 -1.6182 35 1 4.3601 0.3151 -0.5858 36 1 7.4753 1.5068 -0.5337 37 1 2.1886 -2.7715 0.7130 38 1 3.6716 -2.0338 1.3924 39 1 1.6878 -0.1221 5.4195 40 1 3.0194 -2.0650 6.6294 41 1 5.2486 -3.7441 4.4530 42 1 4.2846 -4.1107 5.9036 43 1 2.6033 -5.2664 4.4943 44 1 3.5673 -4.8998 3.0436 45 1 3.3614 -6.9008 6.0617 46 1 5.0001 -7.5801 5.9173 47 1 4.7810 -5.8746 6.3780 48 1 4.0951 -7.1217 2.4461 49 1 4.6120 -8.2866 3.6886 50 1 2.9499 -7.6490 3.7025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988857663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:45 Heat of formation + Delta-G solvation = 79.452061 kcal Electronic energy + Delta-G solvation = -30183.368365 eV Core-core repulsion = 26248.485776 eV Total energy + Delta-G solvation = -3934.882589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.50764 -39.50657 -38.00845 -37.09509 -33.88000 -33.69415 -31.64650 -31.20785 -30.38400 -29.16476 -28.32391 -27.96500 -25.47127 -25.19154 -23.71932 -23.18688 -21.63093 -21.38115 -20.62762 -19.83956 -18.64896 -17.32986 -17.16750 -16.47652 -16.30861 -15.80023 -15.68850 -15.29094 -14.73363 -14.62921 -14.42860 -13.92545 -13.70144 -13.62350 -13.32888 -13.27950 -13.03021 -12.85171 -12.75690 -12.55897 -12.31510 -12.10567 -12.03883 -11.92628 -11.76869 -11.51172 -11.38963 -11.06989 -10.95342 -10.78649 -10.61637 -10.29300 -10.19646 -9.94781 -9.64204 -9.59759 -9.09677 -8.95093 -8.92146 -8.77826 -8.05949 -6.94455 -5.74561 -3.04037 1.87431 2.29913 2.41425 3.44586 3.46296 3.49042 3.50242 3.67314 3.85231 4.23727 4.57408 4.59752 4.74222 4.75824 4.85123 4.96013 4.96517 5.08936 5.18636 5.22639 5.28761 5.37967 5.43963 5.46859 5.52598 5.60663 5.63522 5.65378 5.70625 5.77724 5.80860 5.89239 5.94455 6.00699 6.13755 6.34685 6.38340 6.47396 6.52444 6.56037 6.59556 6.60613 6.78152 6.81119 6.85401 7.11269 7.70854 8.01140 8.12780 8.42829 8.67835 9.54344 10.10860 10.45645 11.47607 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007185 B = 0.004654 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3896.115723 B = 6014.828438 C = 8164.698456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.075 0.925 4 C -0.139 4.139 5 C 0.166 3.834 6 H 0.072 0.928 7 N -0.711 5.711 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.009 4.009 11 N -0.930 5.930 12 Si 0.905 3.095 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C 0.075 3.925 17 N -0.585 5.585 18 C 0.616 3.384 19 O -0.549 6.549 20 C -0.006 4.006 21 C -0.181 4.181 22 C -0.025 4.025 23 N -0.285 5.285 24 C 0.125 3.875 25 C 0.044 3.956 26 N -0.544 5.544 27 C 0.016 3.984 28 C 0.026 3.974 29 N -0.242 5.242 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.040 0.960 44 H 0.097 0.903 45 H 0.027 0.973 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 -14.258 11.599 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.178 4.178 5 C 0.054 3.946 6 H 0.090 0.910 7 N -0.350 5.350 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.206 4.206 11 N -0.577 5.577 12 Si 0.736 3.264 13 H -0.212 1.212 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.051 4.051 17 N -0.316 5.316 18 C 0.403 3.597 19 O -0.427 6.427 20 C -0.166 4.166 21 C -0.209 4.209 22 C -0.167 4.167 23 N -0.074 5.074 24 C 0.004 3.996 25 C -0.084 4.084 26 N -0.268 5.268 27 C -0.132 4.132 28 C -0.122 4.122 29 N -0.077 5.077 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.116 0.884 39 H 0.177 0.823 40 H 0.194 0.806 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.115 0.885 45 H 0.046 0.954 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.973 -14.514 10.883 20.239 hybrid contribution -0.066 0.217 1.072 1.096 sum -9.039 -14.297 11.955 20.713 Atomic orbital electron populations 1.22132 0.95452 1.01709 1.02407 1.21502 0.93532 0.96763 0.84664 0.90712 1.23091 0.98388 1.00017 0.96339 1.21378 0.86954 0.94259 0.92027 0.90990 1.42311 1.00060 1.05459 1.87205 1.19180 0.83229 0.91922 1.42953 0.91112 1.24732 0.97774 0.95335 1.02736 1.69655 1.29000 1.02124 1.56946 0.86304 0.84509 0.77749 0.77822 1.21222 1.21771 1.21305 1.23513 0.95158 0.86118 1.00349 1.48212 1.50867 1.28551 1.04009 1.16485 0.79724 0.83157 0.80383 1.90727 1.41444 1.27107 1.83385 1.21923 1.03782 0.96340 0.94546 1.21713 1.05446 1.01676 0.92092 1.22776 1.02503 0.95247 0.96169 1.45542 1.37594 1.21016 1.03250 1.21931 0.95063 0.80855 1.01766 1.22346 0.94260 0.89011 1.02827 1.61856 1.54006 1.04952 1.05961 1.22519 1.00167 1.01839 0.88650 1.22393 0.98378 0.93393 0.98037 1.73747 1.14455 1.12423 1.07110 0.92942 0.91560 0.92015 0.89822 0.90881 0.78065 0.93449 0.93259 0.88373 0.82314 0.80553 0.87699 0.88246 0.94127 0.88476 0.95447 0.90943 0.91181 0.90669 0.90986 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.10 37.16 0.34 -2.03 16 2 C 0.14 2.43 3.45 -66.95 -0.23 2.19 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C -0.14 -2.28 6.08 -24.90 -0.15 -2.43 16 5 C 0.17 3.24 3.72 -65.78 -0.24 2.99 16 6 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 7 N -0.71 -17.64 5.23 -51.35 -0.27 -17.91 16 8 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 11 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 12 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 C 0.07 1.39 5.84 -2.53 -0.01 1.38 16 17 N -0.58 -11.18 3.06 -164.17 -0.50 -11.68 16 18 C 0.62 12.44 7.65 -12.39 -0.09 12.35 16 19 O -0.55 -12.04 15.98 5.30 0.08 -11.95 16 20 C -0.01 -0.10 6.97 -82.77 -0.58 -0.68 16 21 C -0.18 -2.71 10.81 -39.36 -0.43 -3.14 16 22 C -0.02 -0.30 11.40 -17.17 -0.20 -0.49 16 23 N -0.29 -3.79 3.41 -61.33 -0.21 -4.00 16 24 C 0.12 1.24 6.32 -4.04 -0.03 1.22 16 25 C 0.04 0.44 5.06 -3.82 -0.02 0.42 16 26 N -0.54 -4.86 5.02 -251.26 -1.26 -6.12 16 27 C 0.02 0.11 9.32 60.06 0.56 0.67 16 28 C 0.03 0.20 9.57 60.07 0.57 0.78 16 29 N -0.24 -4.07 8.78 33.42 0.29 -3.78 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.10 6.90 -51.93 -0.36 0.74 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 35 H 0.39 10.45 7.86 -40.82 -0.32 10.13 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 2.07 6.21 -51.93 -0.32 1.75 16 39 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.18 1.32 8.06 -52.48 -0.42 0.89 16 41 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 0.67 6.45 -51.93 -0.34 0.34 16 43 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 44 H 0.10 1.15 8.00 -51.93 -0.42 0.74 16 45 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.07 0.42 8.12 -51.92 -0.42 0.00 16 47 H 0.07 0.40 6.47 -51.93 -0.34 0.06 16 48 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 49 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 50 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -34.09 403.87 -9.21 -43.30 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.38 Total: 10.17 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.75 Total: 6.11 kcal Atomic # 7 Polarization: -69.86 SS G_CDS: -1.22 Total: -71.09 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.09 -9.21 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988857663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.748 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds