Wall clock time and date at job start Wed Apr 1 2020 00:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21575 * 119.99558 * 0.02562 * 18 17 2 20 20 C 1.47706 * 120.00325 * 179.97438 * 18 17 2 21 21 C 1.41500 * 126.51601 * 179.97438 * 20 18 17 22 22 C 1.35367 * 105.50138 * 180.02562 * 21 20 18 23 23 N 1.35023 * 107.22857 * 359.97438 * 22 21 20 24 24 C 1.46504 * 124.88700 * 180.02562 * 23 22 21 25 25 C 1.53002 * 109.47208 * 124.99907 * 24 23 22 26 26 N 1.46901 * 109.46857 * 180.02562 * 25 24 23 27 27 C 1.46892 * 111.00089 * 66.04679 * 26 25 24 28 28 C 1.46904 * 110.99860 * 190.00290 * 26 25 24 29 29 N 1.28473 * 110.23419 * 359.72872 * 23 22 21 30 30 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 31 31 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 32 32 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 33 33 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 34 34 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 35 35 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 36 36 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 37 37 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 38 38 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 39 39 H 1.08000 * 127.25275 * 0.02562 * 21 20 18 40 40 H 1.08003 * 126.38554 * 180.02562 * 22 21 20 41 41 H 1.08995 * 109.47285 * 245.00511 * 24 23 22 42 42 H 1.09006 * 109.46785 * 5.00052 * 24 23 22 43 43 H 1.08998 * 109.47192 * 300.00063 * 25 24 23 44 44 H 1.08996 * 109.47083 * 60.00309 * 25 24 23 45 45 H 1.09005 * 109.47188 * 60.00245 * 27 26 25 46 46 H 1.09008 * 109.47507 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47251 * 299.99899 * 27 26 25 48 48 H 1.09004 * 109.47096 * 59.99417 * 28 26 25 49 49 H 1.09000 * 109.47152 * 179.97438 * 28 26 25 50 50 H 1.09001 * 109.46902 * 300.00215 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.7159 -1.8786 -1.9769 14 1 9.5658 -0.0374 -0.6477 15 1 8.7310 -2.0364 0.4429 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1438 0.6248 2.7186 20 6 2.3729 -1.1728 3.5633 21 6 2.2284 -0.9305 4.9499 22 6 2.9105 -1.9255 5.5640 23 7 3.4284 -2.7119 4.5962 24 6 4.2405 -3.9080 4.8335 25 6 3.6114 -5.1026 4.1136 26 7 4.4254 -6.3020 4.3521 27 6 4.3898 -6.6892 5.7686 28 6 3.9926 -7.4114 3.4919 29 7 3.1016 -2.2639 3.4373 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8799 32 1 -0.3632 0.4966 -0.8997 33 1 2.3530 -0.0461 -2.0200 34 1 1.3051 -1.4460 -1.6182 35 1 4.3601 0.3151 -0.5858 36 1 7.4753 1.5068 -0.5337 37 1 2.1886 -2.7715 0.7130 38 1 3.6716 -2.0338 1.3924 39 1 1.6878 -0.1221 5.4195 40 1 3.0194 -2.0650 6.6294 41 1 5.2486 -3.7441 4.4530 42 1 4.2846 -4.1107 5.9036 43 1 2.6033 -5.2664 4.4943 44 1 3.5673 -4.8998 3.0436 45 1 3.3614 -6.9008 6.0617 46 1 5.0001 -7.5801 5.9173 47 1 4.7810 -5.8746 6.3780 48 1 4.0951 -7.1217 2.4461 49 1 4.6120 -8.2866 3.6886 50 1 2.9499 -7.6490 3.7025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988857663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:43 Heat of formation + Delta-G solvation = 55.255295 kcal Electronic energy + Delta-G solvation = -30184.417615 eV Core-core repulsion = 26248.485776 eV Total energy + Delta-G solvation = -3935.931839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.62338 -40.99592 -38.79675 -38.56427 -35.78686 -34.69170 -33.20820 -32.84425 -31.53040 -30.19422 -30.03554 -28.50678 -26.78689 -26.29085 -25.67514 -24.36708 -22.63257 -22.47329 -21.71963 -21.33957 -19.98653 -19.26091 -18.37415 -17.84173 -17.48417 -17.03787 -16.51372 -16.35901 -16.29507 -15.86241 -15.49697 -15.39997 -15.18383 -14.89267 -14.71034 -14.46144 -14.27179 -14.18382 -13.94450 -13.50325 -13.38000 -13.22973 -13.14097 -12.99525 -12.84032 -12.68523 -12.65621 -12.55995 -12.35760 -12.25536 -12.17695 -12.06632 -11.64480 -11.54634 -11.48489 -11.14938 -10.91711 -10.23598 -10.06080 -9.60445 -9.42777 -8.96160 -7.91768 -5.20546 0.58701 1.21561 1.45372 1.46734 1.49755 1.55505 2.09284 2.41899 2.57132 2.95796 3.33356 3.39611 3.57768 3.80107 3.85188 3.91601 3.96035 3.97700 4.11076 4.13842 4.22226 4.28054 4.38598 4.45956 4.51006 4.59611 4.63076 4.70944 4.73462 4.76371 4.77906 4.78355 4.82948 4.84521 5.00819 5.01646 5.03945 5.13035 5.18823 5.26754 5.32659 5.36511 5.54848 5.61170 5.84950 5.93920 6.02541 6.28633 6.55524 6.87821 7.20621 7.34972 8.09765 8.32946 9.31661 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007185 B = 0.004654 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3896.115723 B = 6014.828438 C = 8164.698456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.131 3.869 3 H 0.044 0.956 4 C -0.122 4.122 5 C 0.155 3.845 6 H 0.087 0.913 7 N -0.724 5.724 8 C -0.234 4.234 9 H 0.082 0.918 10 C -0.075 4.075 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.273 1.273 14 H -0.301 1.301 15 H -0.280 1.280 16 C 0.089 3.911 17 N -0.589 5.589 18 C 0.604 3.396 19 O -0.580 6.580 20 C -0.044 4.044 21 C -0.204 4.204 22 C 0.003 3.997 23 N -0.281 5.281 24 C 0.121 3.879 25 C 0.054 3.946 26 N -0.557 5.557 27 C 0.014 3.986 28 C 0.025 3.975 29 N -0.264 5.264 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.164 0.836 40 H 0.231 0.769 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.032 0.968 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -17.078 12.853 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.028 3.972 3 H 0.062 0.938 4 C -0.161 4.161 5 C 0.045 3.955 6 H 0.105 0.895 7 N -0.362 5.362 8 C -0.365 4.365 9 H 0.099 0.901 10 C -0.267 4.267 11 N -0.623 5.623 12 Si 0.798 3.202 13 H -0.199 1.199 14 H -0.227 1.227 15 H -0.207 1.207 16 C -0.036 4.036 17 N -0.320 5.320 18 C 0.392 3.608 19 O -0.460 6.460 20 C -0.203 4.203 21 C -0.232 4.232 22 C -0.139 4.139 23 N -0.070 5.070 24 C 0.002 3.998 25 C -0.075 4.075 26 N -0.282 5.282 27 C -0.133 4.133 28 C -0.123 4.123 29 N -0.101 5.101 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.201 0.799 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.182 0.818 40 H 0.247 0.753 41 H 0.111 0.889 42 H 0.160 0.840 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.304 -17.407 12.115 23.160 hybrid contribution -0.004 0.987 0.745 1.236 sum -9.308 -16.421 12.860 22.840 Atomic orbital electron populations 1.22019 0.93072 1.02634 1.02657 1.21625 0.95402 0.95310 0.84814 0.93796 1.23016 0.97559 1.00063 0.95425 1.21678 0.86431 0.94425 0.92949 0.89519 1.42494 1.01084 1.05238 1.87369 1.19611 0.84297 0.92366 1.40274 0.90057 1.25524 1.01544 0.95709 1.03953 1.69835 1.29331 1.03536 1.59573 0.85276 0.79900 0.76708 0.78289 1.19901 1.22738 1.20654 1.23277 0.94742 0.86862 0.98724 1.48345 1.50703 1.28675 1.04267 1.16956 0.79499 0.83170 0.81183 1.90681 1.42917 1.28432 1.83949 1.21889 1.05703 0.97487 0.95223 1.21965 1.06942 1.03264 0.91074 1.23476 0.99520 0.92946 0.97961 1.45916 1.36823 1.21500 1.02718 1.22221 0.93757 0.79554 1.04266 1.22152 0.94609 0.89622 1.01146 1.61877 1.53871 1.04878 1.07551 1.22608 1.00807 1.02721 0.87178 1.22414 0.98972 0.93525 0.97370 1.73668 1.14873 1.12403 1.09126 0.91452 0.93699 0.89456 0.90212 0.86960 0.79940 0.94332 0.90701 0.90942 0.81817 0.75290 0.88903 0.84041 0.93894 0.91206 0.94898 0.90128 0.89927 0.91811 0.89720 0.95056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.10 71.98 0.65 -3.57 16 2 C 0.13 4.64 3.45 45.34 0.16 4.80 16 3 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 4 C -0.12 -3.83 6.08 31.78 0.19 -3.64 16 5 C 0.16 5.96 3.72 46.38 0.17 6.13 16 6 H 0.09 3.09 8.09 -2.39 -0.02 3.07 16 7 N -0.72 -36.51 5.23 -316.37 -1.66 -38.17 16 8 C -0.23 -12.84 9.96 84.03 0.84 -12.01 16 9 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 11 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 12 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 16 C 0.09 3.32 5.84 86.85 0.51 3.83 16 17 N -0.59 -22.97 3.06 -791.56 -2.43 -25.39 16 18 C 0.60 25.34 7.65 86.75 0.66 26.00 16 19 O -0.58 -26.65 15.98 -3.95 -0.06 -26.72 16 20 C -0.04 -1.64 6.97 42.46 0.30 -1.34 16 21 C -0.20 -6.01 10.81 22.41 0.24 -5.77 16 22 C 0.00 0.07 11.40 83.54 0.95 1.03 16 23 N -0.28 -6.97 3.41 -347.94 -1.19 -8.15 16 24 C 0.12 2.13 6.32 86.38 0.55 2.67 16 25 C 0.05 0.98 5.06 86.30 0.44 1.42 16 26 N -0.56 -8.86 5.02 -948.83 -4.76 -13.62 16 27 C 0.01 0.15 9.32 127.69 1.19 1.34 16 28 C 0.03 0.36 9.57 127.69 1.22 1.58 16 29 N -0.26 -8.87 8.78 -48.18 -0.42 -9.29 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.50 6.90 -2.39 -0.02 1.48 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.11 2.68 7.85 -2.39 -0.02 2.66 16 35 H 0.37 20.80 7.86 -92.71 -0.73 20.07 16 36 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.07 3.12 6.21 -2.38 -0.01 3.10 16 39 H 0.16 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.23 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.14 1.28 6.45 -2.38 -0.02 1.26 16 43 H 0.04 0.76 8.12 -2.39 -0.02 0.74 16 44 H 0.07 1.65 8.00 -2.39 -0.02 1.63 16 45 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.08 0.70 8.12 -2.38 -0.02 0.68 16 47 H 0.08 0.61 6.47 -2.39 -0.02 0.60 16 48 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 49 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 50 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -78.03 403.87 0.53 -77.50 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 0.20 Total: 37.52 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 8.54 Total: 18.56 kcal Atomic # 7 Polarization: -145.29 SS G_CDS: -10.17 Total: -155.46 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.06 Total: -26.72 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -78.03 0.53 -77.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988857663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.752 kcal (2) G-P(sol) polarization free energy of solvation -78.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds