Wall clock time and date at job start Wed Apr 1 2020 00:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.87750 * 2 1 4 4 C 1.54326 * 110.00843 * 121.10300 * 2 1 3 5 5 C 1.55163 * 102.94206 * 141.68192 * 4 2 1 6 6 H 1.08998 * 110.99888 * 206.38157 * 5 4 2 7 7 N 1.46497 * 111.00350 * 82.56668 * 5 4 2 8 8 C 1.36940 * 119.99469 * 154.99789 * 7 5 4 9 9 H 1.07997 * 120.00473 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99561 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00519 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99670 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47172 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46888 * 119.99920 * 12 10 8 15 15 H 1.48499 * 109.47226 * 239.99623 * 12 10 8 16 16 C 1.55130 * 101.48270 * 324.33006 * 5 4 2 17 17 N 1.47025 * 109.88181 * 238.98497 * 2 1 3 18 18 C 1.34769 * 125.64913 * 61.45118 * 17 2 1 19 19 O 1.21580 * 119.99950 * 0.02562 * 18 17 2 20 20 C 1.47706 * 120.00301 * 180.02562 * 18 17 2 21 21 C 1.41509 * 126.52210 * 179.97438 * 20 18 17 22 22 C 1.35362 * 105.50470 * 179.76550 * 21 20 18 23 23 N 1.35033 * 107.22990 * 0.37026 * 22 21 20 24 24 C 1.46502 * 124.88846 * 179.87736 * 23 22 21 25 25 C 1.53000 * 109.47233 * 124.71483 * 24 23 22 26 26 N 1.46902 * 109.47107 * 179.97438 * 25 24 23 27 27 C 1.46906 * 110.99573 * 66.05001 * 26 25 24 28 28 C 1.46898 * 111.00283 * 190.00142 * 26 25 24 29 29 N 1.28467 * 110.23180 * 359.60560 * 23 22 21 30 30 H 1.09004 * 109.47437 * 179.56195 * 1 2 3 31 31 H 1.09003 * 109.47187 * 299.55937 * 1 2 3 32 32 H 1.09002 * 109.47178 * 59.56117 * 1 2 3 33 33 H 1.08996 * 110.71661 * 260.04294 * 4 2 1 34 34 H 1.08994 * 110.72466 * 23.31449 * 4 2 1 35 35 H 0.96995 * 120.00351 * 335.00227 * 7 5 4 36 36 H 0.96999 * 120.00219 * 179.97438 * 11 10 8 37 37 H 1.09006 * 110.49744 * 278.45178 * 16 5 4 38 38 H 1.09002 * 110.34235 * 156.06116 * 16 5 4 39 39 H 1.07997 * 127.24373 * 359.97438 * 21 20 18 40 40 H 1.07998 * 126.38746 * 180.26131 * 22 21 20 41 41 H 1.09001 * 109.46626 * 4.72011 * 24 23 22 42 42 H 1.09001 * 109.46748 * 244.72016 * 24 23 22 43 43 H 1.09001 * 109.46884 * 60.00686 * 25 24 23 44 44 H 1.08994 * 109.47429 * 300.00572 * 25 24 23 45 45 H 1.09001 * 109.46544 * 183.95424 * 27 26 25 46 46 H 1.09001 * 109.47272 * 303.95030 * 27 26 25 47 47 H 1.09000 * 109.47033 * 63.95479 * 27 26 25 48 48 H 1.08997 * 109.47009 * 300.00826 * 28 26 25 49 49 H 1.09005 * 109.46772 * 60.00287 * 28 26 25 50 50 H 1.08996 * 109.47125 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0580 -0.7491 1.2416 5 6 3.2918 -1.5109 0.6893 6 1 3.4924 -2.4071 1.2763 7 7 4.4696 -0.6409 0.6451 8 6 5.7251 -1.1855 0.6926 9 1 5.8471 -2.2563 0.7621 10 6 6.8412 -0.3611 0.6513 11 7 6.6927 0.9440 0.5670 12 14 8.5540 -1.1040 0.7153 13 1 8.4491 -2.5822 0.8086 14 1 9.2990 -0.7368 -0.5157 15 1 9.2753 -0.5833 1.9043 16 6 2.8129 -1.8794 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.8049 -0.3603 -2.4662 19 8 1.1370 0.6240 -2.7178 20 6 2.3697 -1.1701 -3.5649 21 6 2.2209 -0.9289 -4.9513 22 6 2.9093 -1.9187 -5.5666 23 7 3.4286 -2.7056 -4.5999 24 6 4.2453 -3.8981 -4.8387 25 6 5.5752 -3.7630 -4.0944 26 7 6.3939 -4.9591 -4.3335 27 6 6.7912 -5.0516 -5.7447 28 6 7.5699 -4.9767 -3.4533 29 7 3.1082 -2.2548 -3.4403 30 1 -0.3634 -1.0277 -0.0079 31 1 -0.3634 0.5070 0.8939 32 1 -0.3634 0.5206 -0.8860 33 1 2.3556 -0.0453 2.0189 34 1 1.3103 -1.4472 1.6178 35 1 4.3601 0.3208 0.5824 36 1 7.4726 1.5201 0.5385 37 1 2.1851 -2.7701 -0.7138 38 1 3.6680 -2.0359 -1.3971 39 1 1.6759 -0.1228 -5.4197 40 1 3.0209 -2.0549 -6.6322 41 1 4.4357 -4.0000 -5.9072 42 1 3.7151 -4.7797 -4.4784 43 1 5.3848 -3.6611 -3.0260 44 1 6.1053 -2.8814 -4.4547 45 1 7.3364 -5.9811 -5.9084 46 1 5.9015 -5.0365 -6.3744 47 1 7.4303 -4.2059 -5.9985 48 1 8.1788 -4.0927 -3.6428 49 1 7.2450 -4.9778 -2.4128 50 1 8.1581 -5.8728 -3.6508 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988857671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:15 Heat of formation + Delta-G solvation = 54.801283 kcal Electronic energy + Delta-G solvation = -30451.656543 eV Core-core repulsion = 26515.705017 eV Total energy + Delta-G solvation = -3935.951526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.61870 -40.99305 -38.80747 -38.57120 -35.80483 -34.69320 -33.21767 -32.84405 -31.52725 -30.20637 -30.05136 -28.53827 -26.79015 -26.29934 -25.70082 -24.37218 -22.63216 -22.48125 -21.72334 -21.34362 -19.98447 -19.28112 -18.36193 -17.89063 -17.31656 -17.20969 -16.53677 -16.40305 -16.18098 -15.98286 -15.49578 -15.35009 -15.24823 -14.90766 -14.73726 -14.45833 -14.32224 -14.16110 -13.93589 -13.50686 -13.40585 -13.24157 -13.14891 -13.01037 -12.93420 -12.72008 -12.69669 -12.57089 -12.36258 -12.22386 -12.13188 -12.06464 -11.65996 -11.55225 -11.48885 -11.15859 -10.95088 -10.23360 -10.05844 -9.60571 -9.51215 -8.97802 -7.94388 -5.22795 0.58660 1.20770 1.42585 1.43824 1.47270 1.53648 2.09748 2.41888 2.53814 2.91080 3.32755 3.37570 3.57219 3.80560 3.84750 3.90797 3.95664 3.97894 4.09340 4.13358 4.20846 4.26608 4.38570 4.41960 4.50950 4.57740 4.60461 4.71093 4.72914 4.76292 4.77763 4.78187 4.82639 4.85030 4.96744 5.00935 5.02317 5.13006 5.18808 5.26029 5.32742 5.36409 5.53275 5.61137 5.78845 5.90713 5.99758 6.26386 6.55609 6.88023 7.20733 7.32503 8.07723 8.30927 9.29596 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006759 B = 0.005856 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4141.825840 B = 4779.983503 C = 7970.918205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.043 0.957 4 C -0.122 4.122 5 C 0.156 3.844 6 H 0.087 0.913 7 N -0.723 5.723 8 C -0.227 4.227 9 H 0.082 0.918 10 C -0.077 4.077 11 N -0.973 5.973 12 Si 0.965 3.035 13 H -0.258 1.258 14 H -0.302 1.302 15 H -0.295 1.295 16 C 0.088 3.912 17 N -0.589 5.589 18 C 0.603 3.397 19 O -0.580 6.580 20 C -0.045 4.045 21 C -0.205 4.205 22 C 0.004 3.996 23 N -0.281 5.281 24 C 0.128 3.872 25 C 0.046 3.954 26 N -0.543 5.543 27 C 0.012 3.988 28 C 0.022 3.978 29 N -0.264 5.264 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.369 0.631 36 H 0.247 0.753 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.164 0.836 40 H 0.231 0.769 41 H 0.143 0.857 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.025 0.975 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.023 0.977 48 H 0.017 0.983 49 H 0.060 0.940 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 -15.020 -12.993 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.029 3.971 3 H 0.062 0.938 4 C -0.161 4.161 5 C 0.045 3.955 6 H 0.105 0.895 7 N -0.361 5.361 8 C -0.359 4.359 9 H 0.100 0.900 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.795 3.205 13 H -0.182 1.182 14 H -0.230 1.230 15 H -0.222 1.222 16 C -0.037 4.037 17 N -0.320 5.320 18 C 0.392 3.608 19 O -0.460 6.460 20 C -0.203 4.203 21 C -0.233 4.233 22 C -0.138 4.138 23 N -0.070 5.070 24 C 0.009 3.991 25 C -0.084 4.084 26 N -0.267 5.267 27 C -0.135 4.135 28 C -0.127 4.127 29 N -0.101 5.101 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.182 0.818 40 H 0.248 0.752 41 H 0.160 0.840 42 H 0.130 0.870 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.104 0.896 46 H 0.110 0.890 47 H 0.041 0.959 48 H 0.036 0.964 49 H 0.079 0.921 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.738 -15.885 -12.264 21.169 hybrid contribution 1.428 2.069 -0.637 2.594 sum -5.309 -13.816 -12.901 19.634 Atomic orbital electron populations 1.22024 0.93091 1.02689 1.02639 1.21620 0.95398 0.95308 0.84806 0.93838 1.23013 0.97556 1.00084 0.95411 1.21712 0.86429 0.94375 0.92950 0.89498 1.42505 1.01116 1.05237 1.87256 1.19671 0.84201 0.92344 1.39668 0.89970 1.25516 1.01478 0.95700 1.04214 1.69850 1.29171 1.03482 1.59892 0.85183 0.80549 0.78527 0.76276 1.18159 1.22987 1.22244 1.23336 0.94810 0.86850 0.98730 1.48341 1.50722 1.28671 1.04264 1.16962 0.79524 0.83154 0.81193 1.90682 1.42796 1.28542 1.83988 1.21893 1.05463 0.97741 0.95219 1.21967 1.06961 1.03290 0.91068 1.23484 0.99752 0.92607 0.98005 1.45948 1.36530 1.21849 1.02702 1.22207 0.89389 0.83560 1.03921 1.22212 0.93553 0.91491 1.01097 1.61984 1.20589 1.37191 1.06926 1.22659 1.01732 1.01787 0.87330 1.22434 0.91572 1.01344 0.97301 1.73669 1.14844 1.12450 1.09119 0.91405 0.89494 0.93680 0.90224 0.86951 0.79953 0.94387 0.90607 0.90875 0.81849 0.75226 0.83957 0.86977 0.91722 0.95703 0.89621 0.89020 0.95879 0.96439 0.92116 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 9.11 71.98 0.66 -3.59 16 2 C 0.13 4.64 3.45 45.34 0.16 4.80 16 3 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.12 -3.82 6.08 31.79 0.19 -3.63 16 5 C 0.16 5.93 3.72 46.46 0.17 6.10 16 6 H 0.09 3.08 8.09 -2.39 -0.02 3.06 16 7 N -0.72 -36.15 5.24 -316.01 -1.66 -37.81 16 8 C -0.23 -12.32 9.96 84.03 0.84 -11.48 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 11 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 12 Si 0.96 46.03 29.55 68.60 2.03 48.06 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 16 C 0.09 3.26 5.88 86.93 0.51 3.77 16 17 N -0.59 -22.93 3.06 -791.14 -2.42 -25.36 16 18 C 0.60 25.30 7.65 86.75 0.66 25.96 16 19 O -0.58 -26.66 15.95 -3.97 -0.06 -26.72 16 20 C -0.04 -1.64 6.97 42.46 0.30 -1.34 16 21 C -0.20 -6.00 10.81 22.41 0.24 -5.76 16 22 C 0.00 0.08 11.40 83.54 0.95 1.03 16 23 N -0.28 -6.88 3.41 -347.95 -1.19 -8.07 16 24 C 0.13 2.16 6.33 86.38 0.55 2.71 16 25 C 0.05 1.06 5.06 86.30 0.44 1.49 16 26 N -0.54 -10.45 5.02 -948.84 -4.76 -15.21 16 27 C 0.01 0.16 9.40 127.69 1.20 1.36 16 28 C 0.02 0.46 9.57 127.69 1.22 1.68 16 29 N -0.26 -8.83 8.78 -48.17 -0.42 -9.25 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 1.51 6.87 -2.39 -0.02 1.49 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.11 2.69 7.86 -2.39 -0.02 2.67 16 35 H 0.37 20.68 7.86 -92.71 -0.73 19.95 16 36 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.07 3.11 6.18 -2.39 -0.01 3.10 16 39 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.23 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.14 1.19 6.37 -2.39 -0.02 1.18 16 42 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 1.96 8.00 -2.39 -0.02 1.94 16 44 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 45 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 0.72 6.30 -2.39 -0.02 0.71 16 47 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 49 H 0.06 1.45 8.12 -2.38 -0.02 1.43 16 50 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -77.85 403.72 0.55 -77.30 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: 0.20 Total: 38.58 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 8.55 Total: 19.13 kcal Atomic # 7 Polarization: -146.18 SS G_CDS: -10.17 Total: -156.35 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.06 Total: -26.72 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -77.85 0.55 -77.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988857671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.106 kcal (2) G-P(sol) polarization free energy of solvation -77.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds