Wall clock time and date at job start Wed Apr 1 2020 00:09:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53008 * 109.47217 * 2 1
4 4 C 1.53001 * 109.47224 * 119.99597 * 2 1 3
5 5 C 1.52997 * 109.47442 * 174.99886 * 4 2 1
6 6 N 1.46502 * 109.47108 * 180.02562 * 5 4 2
7 7 C 1.34822 * 126.59085 * 125.00324 * 6 5 4
8 8 C 1.36597 * 106.83574 * 180.02562 * 7 6 5
9 9 C 1.47520 * 125.76940 * 179.97438 * 8 7 6
10 10 O 1.21600 * 119.99845 * 359.97438 * 9 8 7
11 11 N 1.34768 * 120.00324 * 180.02562 * 9 8 7
12 12 C 1.47433 * 125.64669 * 0.05017 * 11 9 8
13 13 C 1.54910 * 104.83102 * 204.08506 * 12 11 9
14 14 H 1.08997 * 111.03758 * 81.07988 * 13 12 11
15 15 N 1.46506 * 111.00124 * 204.91900 * 13 12 11
16 16 C 1.36938 * 119.99629 * 267.19513 * 15 13 12
17 17 H 1.07998 * 120.00011 * 0.02562 * 16 15 13
18 18 C 1.38815 * 119.99969 * 180.02562 * 16 15 13
19 19 N 1.31614 * 119.99920 * 180.02562 * 18 16 15
20 20 Si 1.86797 * 119.99645 * 359.97438 * 18 16 15
21 21 H 1.48498 * 109.47073 * 90.00345 * 20 18 16
22 22 H 1.48505 * 109.47283 * 209.99991 * 20 18 16
23 23 H 1.48493 * 109.47464 * 330.00083 * 20 18 16
24 24 C 1.55154 * 101.58203 * 322.99116 * 13 12 11
25 25 C 1.47023 * 125.65460 * 180.02562 * 11 9 8
26 26 H 1.09001 * 109.87803 * 298.40455 * 25 11 9
27 27 C 1.53000 * 109.88335 * 59.56241 * 25 11 9
28 28 N 1.34404 * 108.45968 * 0.24183 * 8 7 6
29 29 N 1.28761 * 109.52196 * 359.58952 * 28 8 7
30 30 H 1.08998 * 109.47111 * 300.00256 * 1 2 3
31 31 H 1.09006 * 109.46745 * 60.00507 * 1 2 3
32 32 H 1.08995 * 109.46972 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47626 * 239.99693 * 2 1 3
34 34 H 1.08995 * 109.46566 * 299.99817 * 3 2 1
35 35 H 1.08995 * 109.46839 * 60.00101 * 3 2 1
36 36 H 1.09000 * 109.46883 * 179.97438 * 3 2 1
37 37 H 1.09010 * 109.46788 * 55.00067 * 4 2 1
38 38 H 1.08995 * 109.47289 * 295.00614 * 4 2 1
39 39 H 1.09001 * 109.47204 * 60.00427 * 5 4 2
40 40 H 1.08995 * 109.47473 * 300.00615 * 5 4 2
41 41 H 1.07995 * 126.58077 * 0.02562 * 7 6 5
42 42 H 1.09006 * 110.36319 * 85.24849 * 12 11 9
43 43 H 1.08995 * 110.36350 * 322.92502 * 12 11 9
44 44 H 0.96995 * 119.99814 * 87.19494 * 15 13 12
45 45 H 0.97000 * 119.99611 * 180.02562 * 19 18 16
46 46 H 1.09002 * 110.72211 * 153.86855 * 24 13 12
47 47 H 1.09005 * 110.72174 * 277.13916 * 24 13 12
48 48 H 1.08999 * 109.47140 * 177.81268 * 27 25 11
49 49 H 1.09008 * 109.47023 * 297.81627 * 27 25 11
50 50 H 1.08998 * 109.46705 * 57.81066 * 27 25 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5648 -0.8310 1.1881
6 7 4.0530 -1.5221 2.3840
7 6 4.8312 -2.6226 2.4149
8 6 5.0415 -2.9217 3.7310
9 6 5.8398 -4.0523 4.2415
10 8 6.3793 -4.8158 3.4638
11 7 5.9706 -4.2396 5.5697
12 6 5.3714 -3.3955 6.6195
13 6 6.2706 -3.6106 7.8624
14 1 7.1687 -2.9954 7.8068
15 7 5.5305 -3.3440 9.0984
16 6 5.5659 -2.0965 9.6620
17 1 6.1389 -1.3091 9.1952
18 6 4.8651 -1.8440 10.8334
19 7 4.8986 -0.6449 11.3748
20 14 3.8733 -3.2059 11.6403
21 1 4.7320 -3.9384 12.6053
22 1 2.7145 -2.6160 12.3577
23 1 3.3849 -4.1458 10.5997
24 6 6.6199 -5.1171 7.7373
25 6 6.7338 -5.3198 6.2118
26 1 6.3134 -6.2864 5.9340
27 6 8.2011 -5.2452 5.7847
28 7 4.3932 -2.0152 4.4823
29 7 3.8004 -1.1666 3.7165
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8901
32 1 -0.3633 -1.0276 -0.0005
33 1 1.8934 -0.5138 -0.8899
34 1 1.6767 1.9563 -0.8900
35 1 1.6767 1.9563 0.8900
36 1 3.1300 1.4425 0.0005
37 1 1.6053 -1.7198 1.2952
38 1 1.7516 -0.1583 2.1370
39 1 3.9995 0.1675 1.1422
40 1 3.8532 -1.3939 0.3004
41 1 5.2147 -3.1638 1.5626
42 1 4.3513 -3.7176 6.8290
43 1 5.3852 -2.3482 6.3179
44 1 5.0156 -4.0512 9.5174
45 1 4.4092 -0.4686 12.1935
46 1 7.5691 -5.3349 8.2270
47 1 5.8214 -5.7337 8.1501
48 1 8.7678 -6.0244 6.2943
49 1 8.2735 -5.3893 4.7066
50 1 8.6071 -4.2688 6.0488
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989441744.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:09:34
Heat of formation + Delta-G solvation = 70.183775 kcal
Electronic energy + Delta-G solvation = -29088.976430 eV
Core-core repulsion = 25153.691938 eV
Total energy + Delta-G solvation = -3935.284492 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 3.21 seconds
Orbital eigenvalues (eV)
-42.22488 -39.74572 -37.67135 -37.33927 -34.49663 -34.22826 -31.90132 -31.42257
-30.84988 -29.46052 -28.72709 -27.65113 -25.47773 -24.95344 -24.24812 -23.15034
-21.94301 -21.38586 -20.47481 -20.16452 -19.12687 -17.68235 -17.51564 -16.53808
-16.34442 -15.74532 -15.50880 -15.29071 -14.82702 -14.53528 -14.45035 -14.16751
-13.95797 -13.62913 -13.42085 -13.34757 -13.06401 -12.76265 -12.67988 -12.49174
-12.43509 -12.24768 -11.94812 -11.88003 -11.86076 -11.56613 -11.47192 -11.29005
-11.26410 -11.10168 -10.96350 -10.58820 -10.54143 -10.35011 -10.29933 -9.95092
-9.88773 -9.57076 -9.29437 -8.95109 -8.32136 -7.30045 -5.75881 -3.13027
1.09349 1.81229 1.91487 3.15334 3.39528 3.41986 3.43214 3.47414
3.95459 4.17062 4.22828 4.38613 4.44926 4.58170 4.60336 4.69741
4.82770 4.85189 5.02732 5.11517 5.13583 5.16198 5.20054 5.21098
5.33948 5.39645 5.41347 5.47992 5.49419 5.59421 5.63902 5.67811
5.74878 5.80642 5.85532 5.89241 5.90264 5.95301 6.19245 6.24653
6.26654 6.30321 6.47206 6.61909 6.77625 6.85510 7.75648 7.95814
8.00110 8.33999 8.42831 9.19696 9.91658 10.09981 11.42086
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.010189 B = 0.002915 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2747.384365 B = 9604.713572 C =11736.220919
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.092 4.092
3 C -0.155 4.155
4 C -0.131 4.131
5 C 0.120 3.880
6 N -0.364 5.364
7 C 0.086 3.914
8 C -0.095 4.095
9 C 0.616 3.384
10 O -0.553 6.553
11 N -0.594 5.594
12 C 0.075 3.925
13 C 0.177 3.823
14 H 0.075 0.925
15 N -0.735 5.735
16 C -0.247 4.247
17 H 0.092 0.908
18 C 0.008 3.992
19 N -0.931 5.931
20 Si 0.883 3.117
21 H -0.284 1.284
22 H -0.291 1.291
23 H -0.276 1.276
24 C -0.143 4.143
25 C 0.140 3.860
26 H 0.072 0.928
27 C -0.162 4.162
28 N -0.189 5.189
29 N -0.062 5.062
30 H 0.058 0.942
31 H 0.057 0.943
32 H 0.055 0.945
33 H 0.073 0.927
34 H 0.057 0.943
35 H 0.060 0.940
36 H 0.056 0.944
37 H 0.072 0.928
38 H 0.084 0.916
39 H 0.100 0.900
40 H 0.102 0.898
41 H 0.201 0.799
42 H 0.067 0.933
43 H 0.094 0.906
44 H 0.364 0.636
45 H 0.260 0.740
46 H 0.083 0.917
47 H 0.073 0.927
48 H 0.063 0.937
49 H 0.067 0.933
50 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.052 -3.120 -25.724 26.092
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.111 4.111
3 C -0.212 4.212
4 C -0.169 4.169
5 C -0.001 4.001
6 N -0.148 5.148
7 C -0.071 4.071
8 C -0.234 4.234
9 C 0.402 3.598
10 O -0.432 6.432
11 N -0.326 5.326
12 C -0.050 4.050
13 C 0.065 3.935
14 H 0.093 0.907
15 N -0.376 5.376
16 C -0.377 4.377
17 H 0.110 0.890
18 C -0.188 4.188
19 N -0.578 5.578
20 Si 0.713 3.287
21 H -0.211 1.211
22 H -0.217 1.217
23 H -0.202 1.202
24 C -0.181 4.181
25 C 0.037 3.963
26 H 0.090 0.910
27 C -0.220 4.220
28 N -0.063 5.063
29 N -0.042 5.042
30 H 0.077 0.923
31 H 0.076 0.924
32 H 0.074 0.926
33 H 0.091 0.909
34 H 0.076 0.924
35 H 0.079 0.921
36 H 0.075 0.925
37 H 0.090 0.910
38 H 0.103 0.897
39 H 0.118 0.882
40 H 0.120 0.880
41 H 0.218 0.782
42 H 0.085 0.915
43 H 0.112 0.888
44 H 0.197 0.803
45 H 0.070 0.930
46 H 0.102 0.898
47 H 0.092 0.908
48 H 0.081 0.919
49 H 0.086 0.914
50 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -3.454 -2.228 -25.209 25.542
hybrid contribution -0.480 -1.417 -0.122 1.501
sum -3.935 -3.645 -25.331 25.892
Atomic orbital electron populations
1.21828 0.94496 1.02026 1.02214 1.21056 0.96477 0.96425 0.97153
1.21959 1.01039 0.95744 1.02433 1.21990 0.92456 1.02349 1.00081
1.22156 0.96521 0.98563 0.82814 1.50615 1.34932 1.20177 1.09125
1.23284 0.94289 0.89648 0.99863 1.21435 1.09485 1.02154 0.90351
1.16375 0.79598 0.82611 0.81180 1.90747 1.49796 1.46595 1.56068
1.48374 1.49763 1.29773 1.04646 1.23625 0.97888 0.95947 0.87534
1.21296 0.93962 0.92628 0.85571 0.90671 1.42649 1.58285 1.11457
1.25220 1.19087 1.26122 0.87440 1.05002 0.88975 1.24665 1.00071
0.96236 0.97841 1.69700 1.46461 1.19862 1.21782 0.86572 0.80339
0.82193 0.79555 1.21056 1.21734 1.20233 1.23083 1.02790 0.99187
0.93085 1.21518 0.92049 0.90195 0.92541 0.91014 1.22144 0.95003
1.02201 1.02608 1.74910 1.04917 1.00666 1.25808 1.82083 1.20643
1.19152 0.82339 0.92274 0.92375 0.92564 0.90872 0.92376 0.92084
0.92499 0.90960 0.89685 0.88209 0.87960 0.78175 0.91471 0.88786
0.80310 0.93016 0.89833 0.90825 0.91851 0.91370 0.92246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16
2 C -0.09 -0.44 2.92 -90.62 -0.26 -0.70 16
3 C -0.15 -0.74 8.95 37.16 0.33 -0.40 16
4 C -0.13 -0.84 4.89 -26.73 -0.13 -0.97 16
5 C 0.12 0.75 6.30 -4.04 -0.03 0.73 16
6 N -0.36 -3.92 3.69 -61.06 -0.23 -4.15 16
7 C 0.09 0.97 11.27 -16.83 -0.19 0.78 16
8 C -0.10 -1.45 6.84 -83.55 -0.57 -2.02 16
9 C 0.62 10.22 7.63 -12.48 -0.10 10.12 16
10 O -0.55 -9.65 15.77 5.28 0.08 -9.56 16
11 N -0.59 -9.88 3.08 -164.24 -0.51 -10.39 16
12 C 0.08 1.40 5.81 -2.52 -0.01 1.38 16
13 C 0.18 3.39 3.71 -65.78 -0.24 3.14 16
14 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16
15 N -0.73 -17.04 5.05 -51.35 -0.26 -17.30 16
16 C -0.25 -6.87 10.44 -15.06 -0.16 -7.03 16
17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16
18 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16
19 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16
20 Si 0.88 21.95 27.73 -169.99 -4.71 17.24 16
21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
23 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16
24 C -0.14 -2.18 6.14 -24.90 -0.15 -2.33 16
25 C 0.14 2.07 3.49 -66.96 -0.23 1.84 16
26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
27 C -0.16 -2.17 9.05 37.16 0.34 -1.83 16
28 N -0.19 -3.23 9.40 32.85 0.31 -2.92 16
29 N -0.06 -0.94 13.65 60.35 0.82 -0.12 16
30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
34 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16
35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16
37 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16
38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.10 0.55 6.56 -51.93 -0.34 0.21 16
40 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16
41 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16
42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16
43 H 0.09 1.89 6.14 -51.93 -0.32 1.57 16
44 H 0.36 8.25 5.63 -40.82 -0.23 8.02 16
45 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16
46 H 0.08 1.16 7.83 -51.93 -0.41 0.76 16
47 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16
48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
49 H 0.07 0.98 6.77 -51.92 -0.35 0.63 16
50 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
LS Contribution 401.01 15.07 6.04 6.04
Total: -1.00 -34.22 401.01 -7.17 -41.39
By element:
Atomic # 1 Polarization: 14.09 SS G_CDS: -8.33 Total: 5.75 kcal
Atomic # 6 Polarization: 3.57 SS G_CDS: -1.16 Total: 2.41 kcal
Atomic # 7 Polarization: -64.19 SS G_CDS: 0.92 Total: -63.27 kcal
Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.56 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -34.22 -7.17 -41.39 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989441744.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.572 kcal
(2) G-P(sol) polarization free energy of solvation -34.221 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.184 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.21 seconds