Wall clock time and date at job start Wed Apr 1 2020 00:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47217 * 2 1 4 4 C 1.53001 * 109.47224 * 119.99597 * 2 1 3 5 5 C 1.52997 * 109.47442 * 174.99886 * 4 2 1 6 6 N 1.46502 * 109.47108 * 180.02562 * 5 4 2 7 7 C 1.34822 * 126.59085 * 125.00324 * 6 5 4 8 8 C 1.36597 * 106.83574 * 180.02562 * 7 6 5 9 9 C 1.47520 * 125.76940 * 179.97438 * 8 7 6 10 10 O 1.21600 * 119.99845 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00324 * 180.02562 * 9 8 7 12 12 C 1.47433 * 125.64669 * 0.05017 * 11 9 8 13 13 C 1.54910 * 104.83102 * 204.08506 * 12 11 9 14 14 H 1.08997 * 111.03758 * 81.07988 * 13 12 11 15 15 N 1.46506 * 111.00124 * 204.91900 * 13 12 11 16 16 C 1.36938 * 119.99629 * 267.19513 * 15 13 12 17 17 H 1.07998 * 120.00011 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99969 * 180.02562 * 16 15 13 19 19 N 1.31614 * 119.99920 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99645 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47073 * 90.00345 * 20 18 16 22 22 H 1.48505 * 109.47283 * 209.99991 * 20 18 16 23 23 H 1.48493 * 109.47464 * 330.00083 * 20 18 16 24 24 C 1.55154 * 101.58203 * 322.99116 * 13 12 11 25 25 C 1.47023 * 125.65460 * 180.02562 * 11 9 8 26 26 H 1.09001 * 109.87803 * 298.40455 * 25 11 9 27 27 C 1.53000 * 109.88335 * 59.56241 * 25 11 9 28 28 N 1.34404 * 108.45968 * 0.24183 * 8 7 6 29 29 N 1.28761 * 109.52196 * 359.58952 * 28 8 7 30 30 H 1.08998 * 109.47111 * 300.00256 * 1 2 3 31 31 H 1.09006 * 109.46745 * 60.00507 * 1 2 3 32 32 H 1.08995 * 109.46972 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47626 * 239.99693 * 2 1 3 34 34 H 1.08995 * 109.46566 * 299.99817 * 3 2 1 35 35 H 1.08995 * 109.46839 * 60.00101 * 3 2 1 36 36 H 1.09000 * 109.46883 * 179.97438 * 3 2 1 37 37 H 1.09010 * 109.46788 * 55.00067 * 4 2 1 38 38 H 1.08995 * 109.47289 * 295.00614 * 4 2 1 39 39 H 1.09001 * 109.47204 * 60.00427 * 5 4 2 40 40 H 1.08995 * 109.47473 * 300.00615 * 5 4 2 41 41 H 1.07995 * 126.58077 * 0.02562 * 7 6 5 42 42 H 1.09006 * 110.36319 * 85.24849 * 12 11 9 43 43 H 1.08995 * 110.36350 * 322.92502 * 12 11 9 44 44 H 0.96995 * 119.99814 * 87.19494 * 15 13 12 45 45 H 0.97000 * 119.99611 * 180.02562 * 19 18 16 46 46 H 1.09002 * 110.72211 * 153.86855 * 24 13 12 47 47 H 1.09005 * 110.72174 * 277.13916 * 24 13 12 48 48 H 1.08999 * 109.47140 * 177.81268 * 27 25 11 49 49 H 1.09008 * 109.47023 * 297.81627 * 27 25 11 50 50 H 1.08998 * 109.46705 * 57.81066 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 7 4.0530 -1.5221 2.3840 7 6 4.8312 -2.6226 2.4149 8 6 5.0415 -2.9217 3.7310 9 6 5.8398 -4.0523 4.2415 10 8 6.3793 -4.8158 3.4638 11 7 5.9706 -4.2396 5.5697 12 6 5.3714 -3.3955 6.6195 13 6 6.2706 -3.6106 7.8624 14 1 7.1687 -2.9954 7.8068 15 7 5.5305 -3.3440 9.0984 16 6 5.5659 -2.0965 9.6620 17 1 6.1389 -1.3091 9.1952 18 6 4.8651 -1.8440 10.8334 19 7 4.8986 -0.6449 11.3748 20 14 3.8733 -3.2059 11.6403 21 1 4.7320 -3.9384 12.6053 22 1 2.7145 -2.6160 12.3577 23 1 3.3849 -4.1458 10.5997 24 6 6.6199 -5.1171 7.7373 25 6 6.7338 -5.3198 6.2118 26 1 6.3134 -6.2864 5.9340 27 6 8.2011 -5.2452 5.7847 28 7 4.3932 -2.0152 4.4823 29 7 3.8004 -1.1666 3.7165 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6053 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 3.9995 0.1675 1.1422 40 1 3.8532 -1.3939 0.3004 41 1 5.2147 -3.1638 1.5626 42 1 4.3513 -3.7176 6.8290 43 1 5.3852 -2.3482 6.3179 44 1 5.0156 -4.0512 9.5174 45 1 4.4092 -0.4686 12.1935 46 1 7.5691 -5.3349 8.2270 47 1 5.8214 -5.7337 8.1501 48 1 8.7678 -6.0244 6.2943 49 1 8.2735 -5.3893 4.7066 50 1 8.6071 -4.2688 6.0488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989441744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:34 Heat of formation + Delta-G solvation = 70.183775 kcal Electronic energy + Delta-G solvation = -29088.976430 eV Core-core repulsion = 25153.691938 eV Total energy + Delta-G solvation = -3935.284492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -42.22488 -39.74572 -37.67135 -37.33927 -34.49663 -34.22826 -31.90132 -31.42257 -30.84988 -29.46052 -28.72709 -27.65113 -25.47773 -24.95344 -24.24812 -23.15034 -21.94301 -21.38586 -20.47481 -20.16452 -19.12687 -17.68235 -17.51564 -16.53808 -16.34442 -15.74532 -15.50880 -15.29071 -14.82702 -14.53528 -14.45035 -14.16751 -13.95797 -13.62913 -13.42085 -13.34757 -13.06401 -12.76265 -12.67988 -12.49174 -12.43509 -12.24768 -11.94812 -11.88003 -11.86076 -11.56613 -11.47192 -11.29005 -11.26410 -11.10168 -10.96350 -10.58820 -10.54143 -10.35011 -10.29933 -9.95092 -9.88773 -9.57076 -9.29437 -8.95109 -8.32136 -7.30045 -5.75881 -3.13027 1.09349 1.81229 1.91487 3.15334 3.39528 3.41986 3.43214 3.47414 3.95459 4.17062 4.22828 4.38613 4.44926 4.58170 4.60336 4.69741 4.82770 4.85189 5.02732 5.11517 5.13583 5.16198 5.20054 5.21098 5.33948 5.39645 5.41347 5.47992 5.49419 5.59421 5.63902 5.67811 5.74878 5.80642 5.85532 5.89241 5.90264 5.95301 6.19245 6.24653 6.26654 6.30321 6.47206 6.61909 6.77625 6.85510 7.75648 7.95814 8.00110 8.33999 8.42831 9.19696 9.91658 10.09981 11.42086 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010189 B = 0.002915 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.384365 B = 9604.713572 C =11736.220919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.131 4.131 5 C 0.120 3.880 6 N -0.364 5.364 7 C 0.086 3.914 8 C -0.095 4.095 9 C 0.616 3.384 10 O -0.553 6.553 11 N -0.594 5.594 12 C 0.075 3.925 13 C 0.177 3.823 14 H 0.075 0.925 15 N -0.735 5.735 16 C -0.247 4.247 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.143 4.143 25 C 0.140 3.860 26 H 0.072 0.928 27 C -0.162 4.162 28 N -0.189 5.189 29 N -0.062 5.062 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.364 0.636 45 H 0.260 0.740 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -3.120 -25.724 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.212 4.212 4 C -0.169 4.169 5 C -0.001 4.001 6 N -0.148 5.148 7 C -0.071 4.071 8 C -0.234 4.234 9 C 0.402 3.598 10 O -0.432 6.432 11 N -0.326 5.326 12 C -0.050 4.050 13 C 0.065 3.935 14 H 0.093 0.907 15 N -0.376 5.376 16 C -0.377 4.377 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.713 3.287 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.202 1.202 24 C -0.181 4.181 25 C 0.037 3.963 26 H 0.090 0.910 27 C -0.220 4.220 28 N -0.063 5.063 29 N -0.042 5.042 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.218 0.782 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.197 0.803 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.454 -2.228 -25.209 25.542 hybrid contribution -0.480 -1.417 -0.122 1.501 sum -3.935 -3.645 -25.331 25.892 Atomic orbital electron populations 1.21828 0.94496 1.02026 1.02214 1.21056 0.96477 0.96425 0.97153 1.21959 1.01039 0.95744 1.02433 1.21990 0.92456 1.02349 1.00081 1.22156 0.96521 0.98563 0.82814 1.50615 1.34932 1.20177 1.09125 1.23284 0.94289 0.89648 0.99863 1.21435 1.09485 1.02154 0.90351 1.16375 0.79598 0.82611 0.81180 1.90747 1.49796 1.46595 1.56068 1.48374 1.49763 1.29773 1.04646 1.23625 0.97888 0.95947 0.87534 1.21296 0.93962 0.92628 0.85571 0.90671 1.42649 1.58285 1.11457 1.25220 1.19087 1.26122 0.87440 1.05002 0.88975 1.24665 1.00071 0.96236 0.97841 1.69700 1.46461 1.19862 1.21782 0.86572 0.80339 0.82193 0.79555 1.21056 1.21734 1.20233 1.23083 1.02790 0.99187 0.93085 1.21518 0.92049 0.90195 0.92541 0.91014 1.22144 0.95003 1.02201 1.02608 1.74910 1.04917 1.00666 1.25808 1.82083 1.20643 1.19152 0.82339 0.92274 0.92375 0.92564 0.90872 0.92376 0.92084 0.92499 0.90960 0.89685 0.88209 0.87960 0.78175 0.91471 0.88786 0.80310 0.93016 0.89833 0.90825 0.91851 0.91370 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 2 C -0.09 -0.44 2.92 -90.62 -0.26 -0.70 16 3 C -0.15 -0.74 8.95 37.16 0.33 -0.40 16 4 C -0.13 -0.84 4.89 -26.73 -0.13 -0.97 16 5 C 0.12 0.75 6.30 -4.04 -0.03 0.73 16 6 N -0.36 -3.92 3.69 -61.06 -0.23 -4.15 16 7 C 0.09 0.97 11.27 -16.83 -0.19 0.78 16 8 C -0.10 -1.45 6.84 -83.55 -0.57 -2.02 16 9 C 0.62 10.22 7.63 -12.48 -0.10 10.12 16 10 O -0.55 -9.65 15.77 5.28 0.08 -9.56 16 11 N -0.59 -9.88 3.08 -164.24 -0.51 -10.39 16 12 C 0.08 1.40 5.81 -2.52 -0.01 1.38 16 13 C 0.18 3.39 3.71 -65.78 -0.24 3.14 16 14 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 15 N -0.73 -17.04 5.05 -51.35 -0.26 -17.30 16 16 C -0.25 -6.87 10.44 -15.06 -0.16 -7.03 16 17 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 18 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 19 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 20 Si 0.88 21.95 27.73 -169.99 -4.71 17.24 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 24 C -0.14 -2.18 6.14 -24.90 -0.15 -2.33 16 25 C 0.14 2.07 3.49 -66.96 -0.23 1.84 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 C -0.16 -2.17 9.05 37.16 0.34 -1.83 16 28 N -0.19 -3.23 9.40 32.85 0.31 -2.92 16 29 N -0.06 -0.94 13.65 60.35 0.82 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 37 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.55 6.56 -51.93 -0.34 0.21 16 40 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.89 6.14 -51.93 -0.32 1.57 16 44 H 0.36 8.25 5.63 -40.82 -0.23 8.02 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 46 H 0.08 1.16 7.83 -51.93 -0.41 0.76 16 47 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.98 6.77 -51.92 -0.35 0.63 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -34.22 401.01 -7.17 -41.39 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.33 Total: 5.75 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.16 Total: 2.41 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.92 Total: -63.27 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.22 -7.17 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989441744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.572 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds