Wall clock time and date at job start Wed Apr 1 2020 00:09:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53008 * 109.47217 * 2 1
4 4 C 1.53001 * 109.47224 * 119.99597 * 2 1 3
5 5 C 1.52997 * 109.47442 * 174.99886 * 4 2 1
6 6 N 1.46502 * 109.47108 * 180.02562 * 5 4 2
7 7 C 1.34822 * 126.59085 * 125.00324 * 6 5 4
8 8 C 1.36597 * 106.83574 * 180.02562 * 7 6 5
9 9 C 1.47520 * 125.76940 * 179.97438 * 8 7 6
10 10 O 1.21600 * 119.99845 * 359.97438 * 9 8 7
11 11 N 1.34768 * 120.00324 * 180.02562 * 9 8 7
12 12 C 1.47433 * 125.64669 * 0.05017 * 11 9 8
13 13 C 1.54910 * 104.83102 * 204.08506 * 12 11 9
14 14 H 1.08997 * 111.03758 * 81.07988 * 13 12 11
15 15 N 1.46506 * 111.00124 * 204.91900 * 13 12 11
16 16 C 1.36938 * 119.99629 * 267.19513 * 15 13 12
17 17 H 1.07998 * 120.00011 * 0.02562 * 16 15 13
18 18 C 1.38815 * 119.99969 * 180.02562 * 16 15 13
19 19 N 1.31614 * 119.99920 * 180.02562 * 18 16 15
20 20 Si 1.86797 * 119.99645 * 359.97438 * 18 16 15
21 21 H 1.48498 * 109.47073 * 90.00345 * 20 18 16
22 22 H 1.48505 * 109.47283 * 209.99991 * 20 18 16
23 23 H 1.48493 * 109.47464 * 330.00083 * 20 18 16
24 24 C 1.55154 * 101.58203 * 322.99116 * 13 12 11
25 25 C 1.47023 * 125.65460 * 180.02562 * 11 9 8
26 26 H 1.09001 * 109.87803 * 298.40455 * 25 11 9
27 27 C 1.53000 * 109.88335 * 59.56241 * 25 11 9
28 28 N 1.34404 * 108.45968 * 0.24183 * 8 7 6
29 29 N 1.28761 * 109.52196 * 359.58952 * 28 8 7
30 30 H 1.08998 * 109.47111 * 300.00256 * 1 2 3
31 31 H 1.09006 * 109.46745 * 60.00507 * 1 2 3
32 32 H 1.08995 * 109.46972 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47626 * 239.99693 * 2 1 3
34 34 H 1.08995 * 109.46566 * 299.99817 * 3 2 1
35 35 H 1.08995 * 109.46839 * 60.00101 * 3 2 1
36 36 H 1.09000 * 109.46883 * 179.97438 * 3 2 1
37 37 H 1.09010 * 109.46788 * 55.00067 * 4 2 1
38 38 H 1.08995 * 109.47289 * 295.00614 * 4 2 1
39 39 H 1.09001 * 109.47204 * 60.00427 * 5 4 2
40 40 H 1.08995 * 109.47473 * 300.00615 * 5 4 2
41 41 H 1.07995 * 126.58077 * 0.02562 * 7 6 5
42 42 H 1.09006 * 110.36319 * 85.24849 * 12 11 9
43 43 H 1.08995 * 110.36350 * 322.92502 * 12 11 9
44 44 H 0.96995 * 119.99814 * 87.19494 * 15 13 12
45 45 H 0.97000 * 119.99611 * 180.02562 * 19 18 16
46 46 H 1.09002 * 110.72211 * 153.86855 * 24 13 12
47 47 H 1.09005 * 110.72174 * 277.13916 * 24 13 12
48 48 H 1.08999 * 109.47140 * 177.81268 * 27 25 11
49 49 H 1.09008 * 109.47023 * 297.81627 * 27 25 11
50 50 H 1.08998 * 109.46705 * 57.81066 * 27 25 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5648 -0.8310 1.1881
6 7 4.0530 -1.5221 2.3840
7 6 4.8312 -2.6226 2.4149
8 6 5.0415 -2.9217 3.7310
9 6 5.8398 -4.0523 4.2415
10 8 6.3793 -4.8158 3.4638
11 7 5.9706 -4.2396 5.5697
12 6 5.3714 -3.3955 6.6195
13 6 6.2706 -3.6106 7.8624
14 1 7.1687 -2.9954 7.8068
15 7 5.5305 -3.3440 9.0984
16 6 5.5659 -2.0965 9.6620
17 1 6.1389 -1.3091 9.1952
18 6 4.8651 -1.8440 10.8334
19 7 4.8986 -0.6449 11.3748
20 14 3.8733 -3.2059 11.6403
21 1 4.7320 -3.9384 12.6053
22 1 2.7145 -2.6160 12.3577
23 1 3.3849 -4.1458 10.5997
24 6 6.6199 -5.1171 7.7373
25 6 6.7338 -5.3198 6.2118
26 1 6.3134 -6.2864 5.9340
27 6 8.2011 -5.2452 5.7847
28 7 4.3932 -2.0152 4.4823
29 7 3.8004 -1.1666 3.7165
30 1 -0.3633 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8901
32 1 -0.3633 -1.0276 -0.0005
33 1 1.8934 -0.5138 -0.8899
34 1 1.6767 1.9563 -0.8900
35 1 1.6767 1.9563 0.8900
36 1 3.1300 1.4425 0.0005
37 1 1.6053 -1.7198 1.2952
38 1 1.7516 -0.1583 2.1370
39 1 3.9995 0.1675 1.1422
40 1 3.8532 -1.3939 0.3004
41 1 5.2147 -3.1638 1.5626
42 1 4.3513 -3.7176 6.8290
43 1 5.3852 -2.3482 6.3179
44 1 5.0156 -4.0512 9.5174
45 1 4.4092 -0.4686 12.1935
46 1 7.5691 -5.3349 8.2270
47 1 5.8214 -5.7337 8.1501
48 1 8.7678 -6.0244 6.2943
49 1 8.2735 -5.3893 4.7066
50 1 8.6071 -4.2688 6.0488
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989441744.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:09:27
Heat of formation + Delta-G solvation = 47.406229 kcal
Electronic energy + Delta-G solvation = -29089.964138 eV
Core-core repulsion = 25153.691938 eV
Total energy + Delta-G solvation = -3936.272200 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 10.60 seconds
Orbital eigenvalues (eV)
-43.25194 -41.04677 -38.77571 -38.14851 -36.09163 -35.27981 -33.51519 -33.02470
-31.81225 -30.43994 -30.20891 -28.04728 -26.76228 -25.83360 -25.60617 -24.77581
-22.84302 -22.64833 -21.71129 -20.93097 -20.30984 -19.66596 -18.62636 -17.52059
-17.36137 -17.01798 -16.67827 -16.35484 -15.99524 -15.71173 -15.40862 -15.33964
-14.97001 -14.78557 -14.68632 -14.53885 -14.37854 -14.01764 -13.94855 -13.45536
-13.30685 -13.21509 -13.13533 -13.08293 -12.82525 -12.80998 -12.67220 -12.33783
-12.13314 -12.06511 -12.00476 -11.83999 -11.74255 -11.71143 -11.55446 -11.43203
-11.19761 -11.16364 -10.92586 -10.35977 -9.68538 -9.31989 -8.00071 -5.35442
0.15581 0.62413 1.12174 1.40733 1.44642 1.51240 1.91897 2.21421
2.50886 3.08448 3.28591 3.30321 3.49139 3.72910 3.75520 3.83606
3.90632 3.92094 3.97642 4.00437 4.09994 4.24419 4.33484 4.36593
4.41135 4.43909 4.47020 4.56703 4.72400 4.75175 4.79124 4.87586
4.93722 4.96503 5.00404 5.02852 5.05821 5.07290 5.18585 5.25198
5.27962 5.37888 5.39449 5.46443 5.49057 5.51882 5.78686 6.23195
6.43087 6.84216 7.07979 7.11853 7.81457 8.02077 9.21326
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.010189 B = 0.002915 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2747.384365 B = 9604.713572 C =11736.220919
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.084 4.084
3 C -0.156 4.156
4 C -0.126 4.126
5 C 0.110 3.890
6 N -0.347 5.347
7 C 0.113 3.887
8 C -0.129 4.129
9 C 0.616 3.384
10 O -0.562 6.562
11 N -0.598 5.598
12 C 0.094 3.906
13 C 0.169 3.831
14 H 0.062 0.938
15 N -0.736 5.736
16 C -0.231 4.231
17 H 0.055 0.945
18 C -0.062 4.062
19 N -0.983 5.983
20 Si 0.955 3.045
21 H -0.274 1.274
22 H -0.299 1.299
23 H -0.251 1.251
24 C -0.128 4.128
25 C 0.137 3.863
26 H 0.086 0.914
27 C -0.154 4.154
28 N -0.228 5.228
29 N -0.096 5.096
30 H 0.045 0.955
31 H 0.066 0.934
32 H 0.055 0.945
33 H 0.095 0.905
34 H 0.065 0.935
35 H 0.044 0.956
36 H 0.065 0.935
37 H 0.066 0.934
38 H 0.057 0.943
39 H 0.111 0.889
40 H 0.146 0.854
41 H 0.244 0.756
42 H 0.055 0.945
43 H 0.072 0.928
44 H 0.370 0.630
45 H 0.258 0.742
46 H 0.103 0.897
47 H 0.084 0.916
48 H 0.090 0.910
49 H 0.058 0.942
50 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.878 -5.688 -28.247 28.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.103 4.103
3 C -0.213 4.213
4 C -0.164 4.164
5 C -0.009 4.009
6 N -0.131 5.131
7 C -0.045 4.045
8 C -0.269 4.269
9 C 0.403 3.597
10 O -0.441 6.441
11 N -0.330 5.330
12 C -0.032 4.032
13 C 0.058 3.942
14 H 0.080 0.920
15 N -0.378 5.378
16 C -0.362 4.362
17 H 0.073 0.927
18 C -0.253 4.253
19 N -0.633 5.633
20 Si 0.782 3.218
21 H -0.200 1.200
22 H -0.226 1.226
23 H -0.175 1.175
24 C -0.166 4.166
25 C 0.035 3.965
26 H 0.104 0.896
27 C -0.212 4.212
28 N -0.101 5.101
29 N -0.076 5.076
30 H 0.064 0.936
31 H 0.085 0.915
32 H 0.074 0.926
33 H 0.113 0.887
34 H 0.084 0.916
35 H 0.063 0.937
36 H 0.084 0.916
37 H 0.085 0.915
38 H 0.076 0.924
39 H 0.129 0.871
40 H 0.164 0.836
41 H 0.260 0.740
42 H 0.073 0.927
43 H 0.090 0.910
44 H 0.204 0.796
45 H 0.066 0.934
46 H 0.121 0.879
47 H 0.102 0.898
48 H 0.109 0.891
49 H 0.077 0.923
50 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -3.277 -4.816 -27.790 28.394
hybrid contribution -0.501 -0.528 0.452 0.857
sum -3.778 -5.344 -27.338 28.111
Atomic orbital electron populations
1.21853 0.95003 1.01945 1.02019 1.21026 0.96006 0.96350 0.96938
1.21975 1.01600 0.95671 1.02055 1.21925 0.92751 1.01811 0.99925
1.22679 0.96205 0.99688 0.82288 1.50917 1.33604 1.19714 1.08897
1.23860 0.92359 0.88809 0.99496 1.21581 1.10867 1.02476 0.91974
1.16556 0.79404 0.82792 0.80922 1.90729 1.50333 1.47092 1.55991
1.48385 1.50074 1.29934 1.04562 1.23141 0.97064 0.95178 0.87840
1.21425 0.93038 0.95589 0.84108 0.91969 1.42549 1.58987 1.09805
1.26460 1.18996 1.24352 0.88405 1.04464 0.92662 1.25505 1.02030
0.98891 0.98903 1.69891 1.48314 1.22575 1.22565 0.85408 0.78235
0.79253 0.78862 1.19963 1.22623 1.17524 1.23016 1.04138 0.95619
0.93853 1.21688 0.92794 0.90151 0.91877 0.89644 1.22091 0.94252
1.02608 1.02245 1.74880 1.06082 1.01714 1.27424 1.81988 1.21619
1.19633 0.84351 0.93620 0.91461 0.92594 0.88658 0.91601 0.93664
0.91615 0.91480 0.92392 0.87118 0.83591 0.73993 0.92701 0.90961
0.79609 0.93353 0.87869 0.89756 0.89127 0.92282 0.93279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16
2 C -0.08 -0.64 2.92 -10.79 -0.03 -0.67 16
3 C -0.16 -1.25 8.95 71.98 0.64 -0.60 16
4 C -0.13 -1.46 4.89 30.59 0.15 -1.31 16
5 C 0.11 1.08 6.30 86.38 0.54 1.63 16
6 N -0.35 -6.96 3.69 -347.10 -1.28 -8.24 16
7 C 0.11 2.29 11.27 83.85 0.95 3.24 16
8 C -0.13 -3.88 6.84 40.81 0.28 -3.60 16
9 C 0.62 19.93 7.63 86.69 0.66 20.59 16
10 O -0.56 -18.59 15.77 -4.03 -0.06 -18.65 16
11 N -0.60 -19.56 3.08 -791.78 -2.44 -22.00 16
12 C 0.09 3.54 5.81 86.85 0.50 4.05 16
13 C 0.17 6.44 3.71 46.38 0.17 6.61 16
14 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16
15 N -0.74 -34.03 5.05 -316.37 -1.60 -35.62 16
16 C -0.23 -13.25 10.44 84.03 0.88 -12.37 16
17 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16
18 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16
19 N -0.98 -63.80 13.97 21.65 0.30 -63.50 16
20 Si 0.96 45.53 27.73 68.60 1.90 47.43 16
21 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16
22 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16
23 H -0.25 -10.75 6.52 99.48 0.65 -10.11 16
24 C -0.13 -3.62 6.14 31.78 0.20 -3.43 16
25 C 0.14 3.78 3.49 45.34 0.16 3.94 16
26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16
27 C -0.15 -3.80 9.05 71.98 0.65 -3.15 16
28 N -0.23 -8.03 9.40 -50.00 -0.47 -8.50 16
29 N -0.10 -2.97 13.65 37.02 0.51 -2.47 16
30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16
31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16
32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16
33 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16
34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16
35 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16
36 H 0.06 0.41 6.56 -2.39 -0.02 0.39 16
37 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16
38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
39 H 0.11 0.94 6.56 -2.39 -0.02 0.92 16
40 H 0.15 0.25 8.08 -2.39 -0.02 0.23 16
41 H 0.24 2.64 8.06 -2.91 -0.02 2.62 16
42 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16
43 H 0.07 3.06 6.14 -2.39 -0.01 3.05 16
44 H 0.37 16.17 5.63 -92.71 -0.52 15.65 16
45 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16
46 H 0.10 2.55 7.83 -2.39 -0.02 2.53 16
47 H 0.08 2.25 8.00 -2.38 -0.02 2.24 16
48 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16
49 H 0.06 1.58 6.77 -2.38 -0.02 1.57 16
50 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
Total: -1.00 -78.30 401.01 4.09 -74.20
By element:
Atomic # 1 Polarization: 26.03 SS G_CDS: 0.35 Total: 26.38 kcal
Atomic # 6 Polarization: 4.09 SS G_CDS: 6.88 Total: 10.97 kcal
Atomic # 7 Polarization: -135.35 SS G_CDS: -4.98 Total: -140.33 kcal
Atomic # 8 Polarization: -18.59 SS G_CDS: -0.06 Total: -18.65 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal
Total: -78.30 4.09 -74.20 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989441744.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.611 kcal
(2) G-P(sol) polarization free energy of solvation -78.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.316 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 10.60 seconds