Wall clock time and date at job start Wed Apr 1 2020 00:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.99821 * 2 1 4 4 C 1.54316 * 109.88585 * 121.10308 * 2 1 3 5 5 C 1.55158 * 102.94743 * 141.61309 * 4 2 1 6 6 H 1.08991 * 111.00692 * 206.42315 * 5 4 2 7 7 N 1.46504 * 111.00777 * 82.60652 * 5 4 2 8 8 C 1.36933 * 120.00298 * 155.00082 * 7 5 4 9 9 H 1.08001 * 119.99569 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00270 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99678 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00275 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46856 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47465 * 119.99944 * 12 10 8 15 15 H 1.48503 * 109.47095 * 240.00186 * 12 10 8 16 16 C 1.55134 * 101.48095 * 324.33372 * 5 4 2 17 17 N 1.47026 * 109.88215 * 238.91205 * 2 1 3 18 18 C 1.34777 * 125.65112 * 61.60237 * 17 2 1 19 19 O 1.21603 * 119.99689 * 5.89320 * 18 17 2 20 20 C 1.47423 * 120.00052 * 185.89193 * 18 17 2 21 21 C 1.41293 * 126.41700 * 6.90193 * 20 18 17 22 22 N 1.30444 * 108.02162 * 180.02562 * 21 20 18 23 23 N 1.39932 * 108.89938 * 359.78294 * 22 21 20 24 24 C 1.46502 * 125.75622 * 180.24103 * 23 22 21 25 25 C 1.52994 * 109.47013 * 305.14909 * 24 23 22 26 26 N 1.46900 * 109.47523 * 179.97438 * 25 24 23 27 27 C 1.46893 * 111.00606 * 169.99847 * 26 25 24 28 28 C 1.46899 * 111.00341 * 293.95668 * 26 25 24 29 29 C 1.34264 * 108.49262 * 0.36423 * 23 22 21 30 30 H 1.09000 * 109.46905 * 179.63747 * 1 2 3 31 31 H 1.08994 * 109.47313 * 299.63005 * 1 2 3 32 32 H 1.08996 * 109.47329 * 59.64188 * 1 2 3 33 33 H 1.09003 * 110.72245 * 259.97202 * 4 2 1 34 34 H 1.09000 * 110.72065 * 23.06982 * 4 2 1 35 35 H 0.97000 * 119.99360 * 335.00627 * 7 5 4 36 36 H 0.97008 * 119.99846 * 179.97438 * 11 10 8 37 37 H 1.09003 * 110.49412 * 278.44724 * 16 5 4 38 38 H 1.08998 * 110.34255 * 156.06063 * 16 5 4 39 39 H 1.08002 * 125.98564 * 359.97438 * 21 20 18 40 40 H 1.09005 * 109.47310 * 65.14559 * 24 23 22 41 41 H 1.08999 * 109.47367 * 185.14993 * 24 23 22 42 42 H 1.08999 * 109.47466 * 300.00074 * 25 24 23 43 43 H 1.09008 * 109.47370 * 60.00264 * 25 24 23 44 44 H 1.09004 * 109.47230 * 60.00175 * 27 26 25 45 45 H 1.08993 * 109.47754 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47255 * 300.00815 * 27 26 25 47 47 H 1.09004 * 109.47148 * 59.99330 * 28 26 25 48 48 H 1.08999 * 109.47730 * 179.97438 * 28 26 25 49 49 H 1.09002 * 109.46770 * 299.99985 * 28 26 25 50 50 H 1.07996 * 126.28744 * 179.90241 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2425 5 6 3.2877 -1.5142 0.6922 6 1 3.4853 -2.4110 1.2793 7 7 4.4677 -0.6470 0.6500 8 6 5.7219 -1.1944 0.6994 9 1 5.8411 -2.2656 0.7690 10 6 6.8399 -0.3727 0.6600 11 7 6.6945 0.9327 0.5757 12 14 8.5508 -1.1195 0.7266 13 1 8.4424 -2.5977 0.8184 14 1 9.2988 -0.7540 -0.5030 15 1 9.2714 -0.6007 1.9170 16 6 2.8100 -1.8823 -0.7371 17 7 2.0300 -0.7139 -1.1840 18 6 1.8073 -0.3618 -2.4658 19 8 1.2338 0.6801 -2.7192 20 6 2.2591 -1.2397 -3.5606 21 6 2.8113 -2.5332 -3.4249 22 7 3.0843 -2.9827 -4.6187 23 7 2.7207 -2.0147 -5.5615 24 6 2.8624 -2.1391 -7.0144 25 6 4.3156 -2.4717 -7.3583 26 7 4.4578 -2.5971 -8.8151 27 6 5.8727 -2.6802 -9.2009 28 6 3.7057 -3.7535 -9.3199 29 6 2.2225 -0.9517 -4.9101 30 1 -0.3633 -1.0277 -0.0065 31 1 -0.3633 0.5080 0.8932 32 1 -0.3634 0.5194 -0.8867 33 1 2.3530 -0.0462 2.0200 34 1 1.3040 -1.4438 1.6199 35 1 4.3605 0.3150 0.5872 36 1 7.4758 1.5070 0.5485 37 1 2.1803 -2.7717 -0.7118 38 1 3.6656 -2.0409 -1.3935 39 1 2.9788 -3.0575 -2.4957 40 1 2.2120 -2.9356 -7.3761 41 1 2.5830 -1.1983 -7.4886 42 1 4.9661 -1.6754 -6.9967 43 1 4.5951 -3.4126 -6.8842 44 1 6.3273 -3.5514 -8.7292 45 1 5.9492 -2.7719 -10.2842 46 1 6.3917 -1.7786 -8.8753 47 1 2.6491 -3.6323 -9.0809 48 1 3.8277 -3.8227 -10.4008 49 1 4.0817 -4.6636 -8.8525 50 1 1.8561 -0.0406 -5.3597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989542655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:47 Heat of formation + Delta-G solvation = 53.028727 kcal Electronic energy + Delta-G solvation = -29478.448369 eV Core-core repulsion = 25542.419979 eV Total energy + Delta-G solvation = -3936.028390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 13.10 seconds Orbital eigenvalues (eV) -42.46653 -40.80523 -38.74151 -38.49415 -35.75851 -34.77900 -33.13275 -32.78282 -31.36612 -30.10308 -29.83160 -28.56257 -26.85644 -25.87622 -25.68478 -24.35579 -22.81032 -22.20879 -21.66869 -21.08923 -20.11741 -19.24548 -18.35830 -17.56940 -17.15955 -17.01985 -16.43825 -16.36770 -16.03471 -15.94165 -15.60329 -15.38844 -15.12499 -14.87235 -14.83267 -14.46990 -14.30326 -14.07557 -13.73001 -13.46276 -13.40833 -13.14849 -13.06959 -13.03363 -12.89393 -12.73658 -12.67663 -12.61876 -12.31686 -12.18617 -12.12479 -11.96726 -11.93086 -11.60416 -11.42636 -11.01449 -10.78865 -10.59174 -9.83191 -9.51556 -9.47200 -8.93100 -7.91469 -5.19738 0.50922 1.15053 1.29684 1.48042 1.48670 1.58119 2.16608 2.49954 2.57707 2.87529 3.38179 3.43905 3.68328 3.71079 3.79930 3.91016 3.92967 4.00199 4.10895 4.18277 4.19651 4.22918 4.34522 4.41893 4.44121 4.51617 4.54650 4.60522 4.64365 4.71175 4.74952 4.78726 4.80567 4.83902 4.94811 4.99113 4.99411 5.16662 5.24150 5.25930 5.36915 5.42056 5.58262 5.63437 5.73889 5.86246 5.95391 6.29717 6.48614 6.70663 7.30273 7.36204 8.12233 8.33789 9.32261 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.008602 B = 0.003500 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3254.379770 B = 7997.485032 C =10504.089628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.135 3.865 3 H 0.038 0.962 4 C -0.123 4.123 5 C 0.156 3.844 6 H 0.092 0.908 7 N -0.725 5.725 8 C -0.230 4.230 9 H 0.087 0.913 10 C -0.078 4.078 11 N -0.971 5.971 12 Si 0.966 3.034 13 H -0.259 1.259 14 H -0.303 1.303 15 H -0.297 1.297 16 C 0.070 3.930 17 N -0.598 5.598 18 C 0.602 3.398 19 O -0.596 6.596 20 C -0.310 4.310 21 C 0.076 3.924 22 N -0.317 5.317 23 N -0.356 5.356 24 C 0.133 3.867 25 C 0.049 3.951 26 N -0.549 5.549 27 C 0.023 3.977 28 C 0.015 3.985 29 C 0.134 3.866 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.369 0.631 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.209 0.791 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.024 0.976 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.024 0.976 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 -10.981 -15.304 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.162 4.162 5 C 0.046 3.954 6 H 0.110 0.890 7 N -0.363 5.363 8 C -0.362 4.362 9 H 0.105 0.895 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.797 3.203 13 H -0.183 1.183 14 H -0.231 1.231 15 H -0.224 1.224 16 C -0.055 4.055 17 N -0.329 5.329 18 C 0.393 3.607 19 O -0.480 6.480 20 C -0.324 4.324 21 C -0.110 4.110 22 N -0.137 5.137 23 N -0.135 5.135 24 C 0.013 3.987 25 C -0.080 4.080 26 N -0.274 5.274 27 C -0.125 4.125 28 C -0.132 4.132 29 C -0.019 4.019 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.200 0.800 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.225 0.775 40 H 0.123 0.877 41 H 0.148 0.852 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.043 0.957 50 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -11.473 -11.181 -16.541 23.028 hybrid contribution 1.433 0.589 0.862 1.773 sum -10.040 -10.593 -15.679 21.421 Atomic orbital electron populations 1.22012 0.93327 1.02777 1.02287 1.21522 0.95105 0.95213 0.84982 0.94366 1.23010 0.97693 1.00078 0.95394 1.21726 0.86190 0.94524 0.93000 0.89014 1.42542 1.01144 1.05361 1.87227 1.19730 0.84225 0.92537 1.39716 0.89527 1.25524 1.01509 0.95741 1.04230 1.69851 1.29077 1.03528 1.59803 0.85164 0.80625 0.78416 0.76138 1.18336 1.23115 1.22406 1.23640 0.94638 0.88215 0.99038 1.48214 1.51645 1.28753 1.04275 1.17178 0.77951 0.84100 0.81477 1.90676 1.46717 1.26406 1.84171 1.20245 1.19813 0.98791 0.93597 1.24876 0.95101 0.93805 0.97257 1.77094 1.24050 1.14517 0.98064 1.48696 1.45801 1.11239 1.07721 1.22032 0.98014 1.06491 0.72192 1.22202 0.95947 1.01067 0.88805 1.61967 1.12535 1.42616 1.10243 1.22441 0.86971 1.00845 1.02261 1.22588 0.99061 0.90129 1.01467 1.23243 0.94076 0.93089 0.91493 0.91029 0.89924 0.94005 0.90715 0.86763 0.79970 0.94429 0.88390 0.91470 0.77519 0.87748 0.85213 0.91408 0.94523 0.95727 0.89353 0.91465 0.90172 0.89667 0.95706 0.77578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.10 71.98 0.66 -3.23 16 2 C 0.13 4.39 3.42 45.34 0.16 4.54 16 3 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 4 C -0.12 -3.52 6.07 31.78 0.19 -3.33 16 5 C 0.16 5.36 3.72 46.46 0.17 5.53 16 6 H 0.09 2.87 8.09 -2.39 -0.02 2.85 16 7 N -0.72 -34.51 5.25 -316.01 -1.66 -36.17 16 8 C -0.23 -12.09 9.96 84.03 0.84 -11.25 16 9 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 10 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 11 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 12 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 13 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 14 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 15 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 16 C 0.07 2.17 4.81 86.93 0.42 2.59 16 17 N -0.60 -20.71 3.06 -791.46 -2.42 -23.13 16 18 C 0.60 22.65 7.58 86.66 0.66 23.30 16 19 O -0.60 -25.56 16.17 -4.04 -0.07 -25.63 16 20 C -0.31 -10.03 6.05 -20.15 -0.12 -10.15 16 21 C 0.08 2.28 10.28 85.65 0.88 3.16 16 22 N -0.32 -9.16 12.33 -56.27 -0.69 -9.85 16 23 N -0.36 -8.61 3.65 -346.30 -1.26 -9.87 16 24 C 0.13 2.17 6.41 86.38 0.55 2.72 16 25 C 0.05 0.90 5.13 86.30 0.44 1.35 16 26 N -0.55 -8.40 5.02 -948.87 -4.76 -13.16 16 27 C 0.02 0.32 9.57 127.69 1.22 1.54 16 28 C 0.02 0.18 9.32 127.69 1.19 1.37 16 29 C 0.13 3.57 11.26 84.28 0.95 4.52 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.30 7.08 -2.39 -0.02 1.29 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.11 2.39 7.85 -2.39 -0.02 2.37 16 35 H 0.37 19.94 7.86 -92.71 -0.73 19.21 16 36 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 37 H 0.10 2.28 7.73 -2.39 -0.02 2.26 16 38 H 0.07 2.38 5.92 -2.39 -0.01 2.36 16 39 H 0.21 5.49 4.86 -2.91 -0.01 5.48 16 40 H 0.10 1.40 6.55 -2.38 -0.02 1.38 16 41 H 0.13 1.56 8.06 -2.39 -0.02 1.54 16 42 H 0.07 1.46 8.06 -2.39 -0.02 1.44 16 43 H 0.04 0.81 8.12 -2.38 -0.02 0.79 16 44 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 46 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 47 H 0.08 0.76 6.47 -2.39 -0.02 0.74 16 48 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 49 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.21 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -74.37 401.68 0.32 -74.05 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.21 Total: 36.97 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 8.67 Total: 18.71 kcal Atomic # 7 Polarization: -141.35 SS G_CDS: -10.52 Total: -151.87 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.07 Total: -25.63 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.37 0.32 -74.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989542655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.077 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.10 seconds