Wall clock time and date at job start Wed Apr 1 2020 00:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.70155 * 2 1 4 4 C 1.53193 * 109.58391 * 239.64570 * 2 1 3 5 5 H 1.09007 * 109.49638 * 65.62730 * 4 2 1 6 6 N 1.46496 * 109.52593 * 305.54576 * 4 2 1 7 7 C 1.34781 * 119.99908 * 155.14444 * 6 4 2 8 8 O 1.21593 * 120.00292 * 0.02562 * 7 6 4 9 9 C 1.47526 * 119.99784 * 180.02562 * 7 6 4 10 10 C 1.36596 * 125.76638 * 179.71921 * 9 7 6 11 11 N 1.34815 * 106.83600 * 179.89384 * 10 9 7 12 12 C 1.46501 * 126.59347 * 180.10472 * 11 10 9 13 13 C 1.53001 * 109.47113 * 75.27497 * 12 11 10 14 14 C 1.52999 * 109.47234 * 195.27340 * 12 11 10 15 15 C 1.52997 * 109.47363 * 315.27348 * 12 11 10 16 16 N 1.40212 * 106.81099 * 0.35731 * 11 10 9 17 17 N 1.28758 * 108.36982 * 359.76982 * 16 11 10 18 18 C 1.53043 * 109.31183 * 185.57815 * 4 2 1 19 19 C 1.53036 * 109.52385 * 61.37170 * 18 4 2 20 20 C 1.53193 * 109.31821 * 298.61544 * 19 18 4 21 21 N 1.46924 * 108.76191 * 54.65411 * 20 19 18 22 22 C 1.36939 * 120.62776 * 126.40951 * 21 20 19 23 23 H 1.08007 * 120.00024 * 209.02360 * 22 21 20 24 24 C 1.38809 * 120.00052 * 29.02584 * 22 21 20 25 25 N 1.31618 * 120.00290 * 15.06168 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.05654 * 24 22 21 27 27 H 1.48497 * 109.46839 * 60.00142 * 26 24 22 28 28 H 1.48500 * 109.47277 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47172 * 300.00420 * 26 24 22 30 30 H 1.08998 * 109.47426 * 180.35289 * 1 2 3 31 31 H 1.09004 * 109.46966 * 300.35287 * 1 2 3 32 32 H 1.09002 * 109.47173 * 60.34988 * 1 2 3 33 33 H 0.97000 * 120.00293 * 335.14902 * 6 4 2 34 34 H 1.08000 * 126.58347 * 0.03279 * 10 9 7 35 35 H 1.09005 * 109.47211 * 59.99923 * 13 12 11 36 36 H 1.08994 * 109.47195 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.47361 * 300.00258 * 13 12 11 38 38 H 1.09009 * 109.47006 * 60.00207 * 14 12 11 39 39 H 1.08998 * 109.47387 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47302 * 300.00155 * 14 12 11 41 41 H 1.09002 * 109.46549 * 60.00085 * 15 12 11 42 42 H 1.09001 * 109.47156 * 179.97438 * 15 12 11 43 43 H 1.08996 * 109.47306 * 300.00625 * 15 12 11 44 44 H 1.08992 * 109.46127 * 181.38817 * 18 4 2 45 45 H 1.08997 * 109.45595 * 301.36143 * 18 4 2 46 46 H 1.08999 * 109.49922 * 58.58561 * 19 18 4 47 47 H 1.09006 * 109.49665 * 178.67755 * 19 18 4 48 48 H 1.09002 * 109.59554 * 294.87104 * 20 19 18 49 49 H 1.08997 * 109.70687 * 174.50797 * 20 19 18 50 50 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 1 1.7659 -0.1667 -2.1369 6 7 1.4514 -2.0679 -1.3080 7 6 1.3314 -2.6969 -2.4939 8 8 1.7150 -2.1537 -3.5119 9 6 0.7346 -4.0446 -2.5569 10 6 0.5516 -4.7845 -3.6905 11 7 -0.0174 -5.9463 -3.3108 12 6 -0.3985 -7.0587 -4.1846 13 6 0.8555 -7.8238 -4.6124 14 6 -1.3383 -8.0012 -3.4301 15 6 -1.1105 -6.5130 -5.4239 16 7 -0.1797 -5.8827 -1.9196 17 7 0.2738 -4.7496 -1.5095 18 6 3.5675 -0.8480 -1.1702 19 6 3.9565 -1.6659 0.0633 20 6 3.4650 -0.9471 1.3237 21 7 2.0225 -0.6997 1.1944 22 6 1.1537 -1.1128 2.1689 23 1 0.1359 -1.3675 1.9124 24 6 1.5811 -1.2043 3.4864 25 7 2.7038 -0.6252 3.8559 26 14 0.5627 -2.1493 4.7352 27 1 0.4342 -3.5634 4.3007 28 1 1.2315 -2.0979 6.0601 29 1 -0.7870 -1.5383 4.8374 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.1456 -2.5014 -0.4959 34 1 0.8145 -4.4954 -4.6973 35 1 1.3629 -8.2127 -3.7295 36 1 0.5720 -8.6518 -5.2622 37 1 1.5252 -7.1525 -5.1500 38 1 -2.2317 -7.4560 -3.1253 39 1 -1.6222 -8.8286 -4.0803 40 1 -0.8310 -8.3900 -2.5472 41 1 -0.4409 -5.8416 -5.9615 42 1 -1.3936 -7.3407 -6.0743 43 1 -2.0038 -5.9678 -5.1192 44 1 3.9377 -1.3448 -2.0669 45 1 4.0060 0.1473 -1.0991 46 1 3.4978 -2.6530 0.0049 47 1 5.0408 -1.7701 0.1037 48 1 3.9903 0.0019 1.4317 49 1 3.6520 -1.5698 2.1985 50 1 3.0022 -0.6889 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993393374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:38 Heat of formation + Delta-G solvation = 74.414854 kcal Electronic energy + Delta-G solvation = -30467.756049 eV Core-core repulsion = 26532.655031 eV Total energy + Delta-G solvation = -3935.101018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.31 seconds Orbital eigenvalues (eV) -42.24755 -39.49124 -37.75198 -37.31002 -33.87762 -32.42683 -32.06170 -31.62974 -30.73341 -29.18549 -28.02321 -27.91852 -26.22810 -24.95508 -23.93676 -23.42050 -21.74949 -20.82372 -20.63429 -19.79943 -18.59963 -17.66937 -16.40135 -16.36578 -16.11982 -15.40698 -14.96854 -14.80997 -14.66016 -14.57837 -14.18849 -13.97249 -13.76742 -13.33209 -13.08353 -13.03575 -12.90971 -12.87685 -12.73251 -12.48229 -12.35084 -12.22906 -11.87016 -11.77672 -11.53045 -11.20359 -11.16532 -11.10821 -10.88225 -10.62089 -10.54473 -10.44181 -10.37422 -10.04214 -9.93831 -9.73392 -9.56380 -9.26834 -9.21025 -8.46199 -8.35479 -6.60159 -5.72842 -3.17566 1.16416 1.89360 1.90135 3.43978 3.49193 3.52208 3.57596 3.62092 3.92321 4.14625 4.24967 4.28092 4.54094 4.77779 4.86418 4.90938 5.02616 5.09417 5.13571 5.17283 5.26471 5.32622 5.37618 5.41207 5.46701 5.60748 5.63980 5.66385 5.75053 5.81618 5.94051 6.04286 6.20137 6.29744 6.36800 6.39136 6.48531 6.59023 6.74870 6.76284 6.85259 7.00794 7.04984 7.16345 7.46720 7.75076 7.87055 7.92398 8.19599 8.50395 8.63994 9.26632 9.89462 10.45761 11.35131 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003433 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.643103 B = 8153.287581 C = 9318.118434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.041 0.959 4 C 0.133 3.867 5 H 0.078 0.922 6 N -0.682 5.682 7 C 0.597 3.403 8 O -0.557 6.557 9 C -0.094 4.094 10 C 0.086 3.914 11 N -0.356 5.356 12 C 0.170 3.830 13 C -0.161 4.161 14 C -0.149 4.149 15 C -0.162 4.162 16 N -0.065 5.065 17 N -0.198 5.198 18 C -0.120 4.120 19 C -0.141 4.141 20 C 0.171 3.829 21 N -0.585 5.585 22 C -0.252 4.252 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.903 5.903 26 Si 0.899 3.101 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.417 0.583 34 H 0.198 0.802 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.017 0.983 49 H 0.088 0.912 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -12.404 -19.251 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.058 0.942 4 C 0.027 3.973 5 H 0.096 0.904 6 N -0.332 5.332 7 C 0.380 3.620 8 O -0.436 6.436 9 C -0.234 4.234 10 C -0.071 4.071 11 N -0.142 5.142 12 C 0.087 3.913 13 C -0.219 4.219 14 C -0.206 4.206 15 C -0.221 4.221 16 N -0.045 5.045 17 N -0.071 5.071 18 C -0.159 4.159 19 C -0.181 4.181 20 C 0.045 3.955 21 N -0.309 5.309 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.547 5.547 26 Si 0.729 3.271 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.210 1.210 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.255 0.745 34 H 0.215 0.785 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.035 0.965 49 H 0.106 0.894 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.094 -12.752 -18.508 23.046 hybrid contribution -0.169 -0.265 0.140 0.344 sum -5.263 -13.017 -18.369 23.120 Atomic orbital electron populations 1.21798 0.95631 1.01665 1.00371 1.20715 0.93383 0.93865 0.86762 0.94194 1.21617 0.93008 0.82718 0.99993 0.90442 1.45845 1.59998 1.18274 1.09055 1.16804 0.78295 0.82559 0.84314 1.90745 1.51765 1.66496 1.34621 1.21636 1.12685 0.99650 0.89404 1.23175 0.96268 0.86215 1.01402 1.50824 1.41731 1.13194 1.08448 1.21039 0.96618 0.84522 0.89073 1.22286 0.96070 1.00766 1.02802 1.21991 0.99108 0.98486 1.01064 1.22295 1.01279 1.02733 0.95761 1.81987 1.21559 1.14096 0.86857 1.74758 1.07085 0.99595 1.25684 1.21770 0.95355 1.00474 0.98295 1.22153 0.98871 0.99717 0.97332 1.20814 0.83106 0.97132 0.94402 1.44149 1.03139 1.64822 1.18794 1.19133 0.94831 1.37915 0.86269 0.91187 1.25056 0.97730 0.99570 0.96945 1.70007 1.23350 1.44477 1.16875 0.86420 0.79616 0.80414 0.80637 1.20855 1.21817 1.20960 0.92604 0.91766 0.94236 0.74489 0.78509 0.91174 0.89768 0.91388 0.91196 0.90278 0.90556 0.91156 0.89527 0.91123 0.93110 0.91838 0.92757 0.93520 0.96462 0.89384 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.72 37.16 0.29 -2.32 16 2 C 0.16 3.27 3.20 -67.60 -0.22 3.05 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.13 2.46 2.32 -67.81 -0.16 2.30 16 5 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 6 N -0.68 -12.58 3.47 -54.73 -0.19 -12.77 16 7 C 0.60 10.57 7.78 -12.47 -0.10 10.48 16 8 O -0.56 -10.59 16.53 5.28 0.09 -10.51 16 9 C -0.09 -1.49 6.99 -83.55 -0.58 -2.08 16 10 C 0.09 1.04 10.43 -16.83 -0.18 0.87 16 11 N -0.36 -3.99 3.44 -48.36 -0.17 -4.16 16 12 C 0.17 1.21 1.25 -131.82 -0.16 1.04 16 13 C -0.16 -0.92 8.74 37.16 0.32 -0.59 16 14 C -0.15 -0.99 8.11 37.16 0.30 -0.68 16 15 C -0.16 -0.81 8.30 37.16 0.31 -0.50 16 16 N -0.07 -0.98 12.91 60.35 0.78 -0.20 16 17 N -0.20 -3.39 12.04 32.85 0.40 -2.99 16 18 C -0.12 -2.20 5.58 -26.69 -0.15 -2.35 16 19 C -0.14 -2.81 5.93 -26.61 -0.16 -2.97 16 20 C 0.17 4.04 5.29 -3.71 -0.02 4.02 16 21 N -0.59 -13.98 2.65 -164.77 -0.44 -14.42 16 22 C -0.25 -6.60 8.61 -15.06 -0.13 -6.73 16 23 H 0.07 1.80 6.20 -52.48 -0.33 1.48 16 24 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -25.87 11.14 55.49 0.62 -25.25 16 26 Si 0.90 21.77 29.58 -169.99 -5.03 16.74 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 30 H 0.05 1.09 6.38 -51.93 -0.33 0.75 16 31 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.42 8.33 7.46 -40.82 -0.30 8.03 16 34 H 0.20 1.78 7.62 -52.49 -0.40 1.38 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 41 H 0.07 0.32 7.43 -51.93 -0.39 -0.07 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 1.13 7.53 -51.93 -0.39 0.74 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 50 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -31.44 394.41 -7.01 -38.45 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.29 Total: 5.57 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.72 Total: 3.60 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 1.00 Total: -59.79 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.44 -7.01 -38.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993393374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.865 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.31 seconds