Wall clock time and date at job start Wed Apr 1 2020 00:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.70155 * 2 1 4 4 C 1.53193 * 109.58391 * 239.64570 * 2 1 3 5 5 H 1.09007 * 109.49638 * 65.62730 * 4 2 1 6 6 N 1.46496 * 109.52593 * 305.54576 * 4 2 1 7 7 C 1.34781 * 119.99908 * 155.14444 * 6 4 2 8 8 O 1.21593 * 120.00292 * 0.02562 * 7 6 4 9 9 C 1.47526 * 119.99784 * 180.02562 * 7 6 4 10 10 C 1.36596 * 125.76638 * 179.71921 * 9 7 6 11 11 N 1.34815 * 106.83600 * 179.89384 * 10 9 7 12 12 C 1.46501 * 126.59347 * 180.10472 * 11 10 9 13 13 C 1.53001 * 109.47113 * 75.27497 * 12 11 10 14 14 C 1.52999 * 109.47234 * 195.27340 * 12 11 10 15 15 C 1.52997 * 109.47363 * 315.27348 * 12 11 10 16 16 N 1.40212 * 106.81099 * 0.35731 * 11 10 9 17 17 N 1.28758 * 108.36982 * 359.76982 * 16 11 10 18 18 C 1.53043 * 109.31183 * 185.57815 * 4 2 1 19 19 C 1.53036 * 109.52385 * 61.37170 * 18 4 2 20 20 C 1.53193 * 109.31821 * 298.61544 * 19 18 4 21 21 N 1.46924 * 108.76191 * 54.65411 * 20 19 18 22 22 C 1.36939 * 120.62776 * 126.40951 * 21 20 19 23 23 H 1.08007 * 120.00024 * 209.02360 * 22 21 20 24 24 C 1.38809 * 120.00052 * 29.02584 * 22 21 20 25 25 N 1.31618 * 120.00290 * 15.06168 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.05654 * 24 22 21 27 27 H 1.48497 * 109.46839 * 60.00142 * 26 24 22 28 28 H 1.48500 * 109.47277 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47172 * 300.00420 * 26 24 22 30 30 H 1.08998 * 109.47426 * 180.35289 * 1 2 3 31 31 H 1.09004 * 109.46966 * 300.35287 * 1 2 3 32 32 H 1.09002 * 109.47173 * 60.34988 * 1 2 3 33 33 H 0.97000 * 120.00293 * 335.14902 * 6 4 2 34 34 H 1.08000 * 126.58347 * 0.03279 * 10 9 7 35 35 H 1.09005 * 109.47211 * 59.99923 * 13 12 11 36 36 H 1.08994 * 109.47195 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.47361 * 300.00258 * 13 12 11 38 38 H 1.09009 * 109.47006 * 60.00207 * 14 12 11 39 39 H 1.08998 * 109.47387 * 179.97438 * 14 12 11 40 40 H 1.08996 * 109.47302 * 300.00155 * 14 12 11 41 41 H 1.09002 * 109.46549 * 60.00085 * 15 12 11 42 42 H 1.09001 * 109.47156 * 179.97438 * 15 12 11 43 43 H 1.08996 * 109.47306 * 300.00625 * 15 12 11 44 44 H 1.08992 * 109.46127 * 181.38817 * 18 4 2 45 45 H 1.08997 * 109.45595 * 301.36143 * 18 4 2 46 46 H 1.08999 * 109.49922 * 58.58561 * 19 18 4 47 47 H 1.09006 * 109.49665 * 178.67755 * 19 18 4 48 48 H 1.09002 * 109.59554 * 294.87104 * 20 19 18 49 49 H 1.08997 * 109.70687 * 174.50797 * 20 19 18 50 50 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2455 5 1 1.7659 -0.1667 -2.1369 6 7 1.4514 -2.0679 -1.3080 7 6 1.3314 -2.6969 -2.4939 8 8 1.7150 -2.1537 -3.5119 9 6 0.7346 -4.0446 -2.5569 10 6 0.5516 -4.7845 -3.6905 11 7 -0.0174 -5.9463 -3.3108 12 6 -0.3985 -7.0587 -4.1846 13 6 0.8555 -7.8238 -4.6124 14 6 -1.3383 -8.0012 -3.4301 15 6 -1.1105 -6.5130 -5.4239 16 7 -0.1797 -5.8827 -1.9196 17 7 0.2738 -4.7496 -1.5095 18 6 3.5675 -0.8480 -1.1702 19 6 3.9565 -1.6659 0.0633 20 6 3.4650 -0.9471 1.3237 21 7 2.0225 -0.6997 1.1944 22 6 1.1537 -1.1128 2.1689 23 1 0.1359 -1.3675 1.9124 24 6 1.5811 -1.2043 3.4864 25 7 2.7038 -0.6252 3.8559 26 14 0.5627 -2.1493 4.7352 27 1 0.4342 -3.5634 4.3007 28 1 1.2315 -2.0979 6.0601 29 1 -0.7870 -1.5383 4.8374 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8931 33 1 1.1456 -2.5014 -0.4959 34 1 0.8145 -4.4954 -4.6973 35 1 1.3629 -8.2127 -3.7295 36 1 0.5720 -8.6518 -5.2622 37 1 1.5252 -7.1525 -5.1500 38 1 -2.2317 -7.4560 -3.1253 39 1 -1.6222 -8.8286 -4.0803 40 1 -0.8310 -8.3900 -2.5472 41 1 -0.4409 -5.8416 -5.9615 42 1 -1.3936 -7.3407 -6.0743 43 1 -2.0038 -5.9678 -5.1192 44 1 3.9377 -1.3448 -2.0669 45 1 4.0060 0.1473 -1.0991 46 1 3.4978 -2.6530 0.0049 47 1 5.0408 -1.7701 0.1037 48 1 3.9903 0.0019 1.4317 49 1 3.6520 -1.5698 2.1985 50 1 3.0022 -0.6889 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993393374.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:30 Heat of formation + Delta-G solvation = 54.781886 kcal Electronic energy + Delta-G solvation = -30468.607398 eV Core-core repulsion = 26532.655031 eV Total energy + Delta-G solvation = -3935.952368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.42 seconds Orbital eigenvalues (eV) -43.28408 -40.95635 -39.07029 -38.26134 -35.60302 -34.03034 -33.44204 -32.95108 -32.01485 -30.80279 -28.47809 -28.41544 -27.87293 -26.83744 -25.00991 -24.60028 -23.43008 -22.36189 -21.80470 -20.97576 -20.18751 -18.65127 -18.23942 -17.40000 -17.12613 -17.06678 -16.56065 -16.05713 -15.76754 -15.61839 -15.49267 -15.15300 -15.05394 -14.87113 -14.54653 -14.49149 -14.19873 -13.65469 -13.52339 -13.37839 -13.27756 -13.18112 -12.95364 -12.85436 -12.77929 -12.69272 -12.45016 -12.44791 -12.33897 -12.28280 -12.16276 -11.94882 -11.92155 -11.65642 -11.35693 -11.25756 -11.11842 -11.00949 -10.47016 -10.36328 -9.85846 -8.58644 -7.79994 -5.25400 0.18668 0.67463 1.07932 1.48418 1.51627 1.56860 2.26621 2.32012 2.55046 3.23802 3.27323 3.35989 3.61801 3.65461 3.75672 3.77691 3.95028 4.05101 4.09485 4.22644 4.24249 4.41867 4.53476 4.57792 4.58757 4.61036 4.67558 4.68518 4.74645 4.79388 4.79968 4.84502 4.96167 5.02379 5.06535 5.07514 5.14479 5.19635 5.23765 5.26722 5.36608 5.47576 5.57953 5.58556 5.65083 5.75976 5.82798 6.46655 6.58351 6.97196 7.21201 7.24006 7.92359 8.44026 9.26146 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003433 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.643103 B = 8153.287581 C = 9318.118434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.040 0.960 4 C 0.141 3.859 5 H 0.090 0.910 6 N -0.687 5.687 7 C 0.601 3.399 8 O -0.571 6.571 9 C -0.123 4.123 10 C 0.107 3.893 11 N -0.339 5.339 12 C 0.157 3.843 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.159 4.159 16 N -0.088 5.088 17 N -0.234 5.234 18 C -0.114 4.114 19 C -0.127 4.127 20 C 0.178 3.822 21 N -0.597 5.597 22 C -0.245 4.245 23 H 0.073 0.927 24 C -0.047 4.047 25 N -0.934 5.934 26 Si 0.955 3.045 27 H -0.283 1.283 28 H -0.298 1.298 29 H -0.277 1.277 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.409 0.591 34 H 0.232 0.768 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.000 1.000 49 H 0.054 0.946 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -13.711 -22.554 27.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.057 0.943 4 C 0.035 3.965 5 H 0.108 0.892 6 N -0.335 5.335 7 C 0.386 3.614 8 O -0.451 6.451 9 C -0.263 4.263 10 C -0.051 4.051 11 N -0.125 5.125 12 C 0.077 3.923 13 C -0.216 4.216 14 C -0.206 4.206 15 C -0.217 4.217 16 N -0.068 5.068 17 N -0.106 5.106 18 C -0.152 4.152 19 C -0.167 4.167 20 C 0.053 3.947 21 N -0.321 5.321 22 C -0.375 4.375 23 H 0.091 0.909 24 C -0.242 4.242 25 N -0.581 5.581 26 Si 0.784 3.216 27 H -0.210 1.210 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.248 0.752 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.018 0.982 49 H 0.072 0.928 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.945 -14.087 -21.841 26.661 hybrid contribution 0.046 0.065 1.024 1.027 sum -5.899 -14.021 -20.818 25.783 Atomic orbital electron populations 1.21703 0.94542 1.01325 1.00989 1.20871 0.94332 0.93680 0.86079 0.94291 1.21469 0.93066 0.82916 0.99080 0.89209 1.45842 1.60372 1.18211 1.09109 1.16958 0.77717 0.83064 0.83647 1.90723 1.52496 1.67107 1.34742 1.21576 1.14614 0.99502 0.90615 1.23606 0.94315 0.85474 1.01696 1.51232 1.39870 1.13773 1.07618 1.21614 0.97777 0.83673 0.89246 1.22313 0.95123 1.01575 1.02568 1.22026 0.98182 0.99241 1.01125 1.22339 1.00653 1.03923 0.94802 1.81895 1.22208 1.13605 0.89044 1.74730 1.08313 1.00539 1.27057 1.21723 0.95266 1.00757 0.97466 1.21954 0.99676 0.98798 0.96223 1.20593 0.83250 0.95907 0.94963 1.44310 1.02971 1.65450 1.19353 1.19399 0.95120 1.36331 0.86694 0.90917 1.25680 0.98904 1.01019 0.98642 1.70150 1.24955 1.46354 1.16641 0.85529 0.78520 0.79109 0.78424 1.20994 1.22420 1.20248 0.93340 0.93376 0.91357 0.75472 0.75165 0.93001 0.86649 0.90924 0.92532 0.86967 0.92396 0.90232 0.86576 0.92184 0.92178 0.90784 0.93835 0.91845 0.98231 0.92802 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 7.72 71.98 0.56 -4.22 16 2 C 0.16 6.32 3.20 44.98 0.14 6.47 16 3 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.14 5.04 2.32 45.07 0.10 5.14 16 5 H 0.09 3.05 7.58 -2.38 -0.02 3.03 16 6 N -0.69 -24.94 3.47 -445.32 -1.54 -26.48 16 7 C 0.60 20.65 7.78 86.69 0.67 21.32 16 8 O -0.57 -20.56 16.53 -4.01 -0.07 -20.63 16 9 C -0.12 -3.80 6.99 40.82 0.29 -3.51 16 10 C 0.11 2.38 10.43 83.85 0.87 3.25 16 11 N -0.34 -7.07 3.44 -306.90 -1.06 -8.13 16 12 C 0.16 1.82 1.25 3.60 0.00 1.82 16 13 C -0.16 -1.30 8.74 71.98 0.63 -0.67 16 14 C -0.15 -1.69 8.11 71.98 0.58 -1.10 16 15 C -0.16 -1.00 8.30 71.98 0.60 -0.40 16 16 N -0.09 -2.63 12.91 37.02 0.48 -2.15 16 17 N -0.23 -8.07 12.04 -49.99 -0.60 -8.67 16 18 C -0.11 -3.99 5.58 30.62 0.17 -3.82 16 19 C -0.13 -5.03 5.93 30.67 0.18 -4.85 16 20 C 0.18 8.63 5.29 86.36 0.46 9.09 16 21 N -0.60 -28.93 2.65 -675.22 -1.79 -30.71 16 22 C -0.25 -13.07 8.61 84.03 0.72 -12.35 16 23 H 0.07 3.79 6.20 -2.91 -0.02 3.77 16 24 C -0.05 -2.63 4.96 84.86 0.42 -2.21 16 25 N -0.93 -55.30 11.14 21.65 0.24 -55.05 16 26 Si 0.95 45.84 29.58 68.60 2.03 47.87 16 27 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 30 H 0.05 1.87 6.38 -2.39 -0.02 1.85 16 31 H 0.05 1.92 7.66 -2.39 -0.02 1.91 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.41 16.48 7.46 -92.71 -0.69 15.79 16 34 H 0.23 3.34 7.62 -2.91 -0.02 3.32 16 35 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.06 0.88 8.06 -2.39 -0.02 0.86 16 41 H 0.08 0.38 7.43 -2.39 -0.02 0.37 16 42 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.04 1.81 7.53 -2.39 -0.02 1.79 16 47 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 48 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 50 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -70.22 394.41 4.34 -65.88 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.25 Total: 24.12 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.41 Total: 13.96 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -4.27 Total: -131.20 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.07 Total: -20.63 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.22 4.34 -65.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993393374.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.657 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.43 seconds