Wall clock time and date at job start Wed Apr 1 2020 00:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58768 * 2 1 4 4 C 1.53187 * 109.70521 * 239.64254 * 2 1 3 5 5 H 1.09007 * 109.49635 * 65.55730 * 4 2 1 6 6 N 1.46494 * 109.50158 * 305.49575 * 4 2 1 7 7 C 1.34772 * 120.00712 * 154.99720 * 6 4 2 8 8 O 1.21553 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.47875 * 120.00313 * 179.97438 * 7 6 4 10 10 N 1.34551 * 126.04872 * 0.02562 * 9 7 6 11 11 C 1.30864 * 107.26999 * 179.97438 * 10 9 7 12 12 N 1.34583 * 107.62372 * 0.02562 * 11 10 9 13 13 C 1.46508 * 125.74861 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46692 * 74.99619 * 13 12 11 15 15 C 1.52999 * 109.47194 * 194.99798 * 13 12 11 16 16 C 1.52998 * 109.46842 * 315.00144 * 13 12 11 17 17 N 1.28847 * 108.50843 * 359.72888 * 12 11 10 18 18 C 1.53042 * 109.31736 * 185.50542 * 4 2 1 19 19 C 1.53044 * 109.53347 * 61.36358 * 18 4 2 20 20 C 1.53625 * 109.24557 * 298.51395 * 19 18 4 21 21 N 1.46926 * 108.53944 * 54.85766 * 20 19 18 22 22 C 1.36938 * 120.63142 * 126.37188 * 21 20 19 23 23 H 1.08002 * 119.99923 * 209.40213 * 22 21 20 24 24 C 1.38816 * 119.99738 * 29.39726 * 22 21 20 25 25 N 1.31616 * 120.00067 * 15.71889 * 24 22 21 26 26 Si 1.86800 * 119.99693 * 195.71918 * 24 22 21 27 27 H 1.48501 * 109.46756 * 265.65557 * 26 24 22 28 28 H 1.48501 * 109.47414 * 25.65218 * 26 24 22 29 29 H 1.48495 * 109.46987 * 145.65653 * 26 24 22 30 30 H 1.09000 * 109.47456 * 299.71528 * 1 2 3 31 31 H 1.08995 * 109.47084 * 59.71793 * 1 2 3 32 32 H 1.09001 * 109.47118 * 179.71809 * 1 2 3 33 33 H 0.97002 * 119.99508 * 334.99487 * 6 4 2 34 34 H 1.07995 * 126.18896 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.46894 * 60.00521 * 14 13 12 36 36 H 1.09001 * 109.46426 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47449 * 300.00159 * 14 13 12 38 38 H 1.08996 * 109.47008 * 60.00045 * 15 13 12 39 39 H 1.09004 * 109.46845 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47029 * 299.99965 * 15 13 12 41 41 H 1.08999 * 109.47397 * 59.99781 * 16 13 12 42 42 H 1.09004 * 109.46755 * 179.97438 * 16 13 12 43 43 H 1.09001 * 109.47103 * 299.99044 * 16 13 12 44 44 H 1.08989 * 109.46292 * 181.38757 * 18 4 2 45 45 H 1.08997 * 109.45874 * 301.36665 * 18 4 2 46 46 H 1.09005 * 109.49786 * 58.59233 * 19 18 4 47 47 H 1.08997 * 109.49665 * 178.65177 * 19 18 4 48 48 H 1.08996 * 109.73656 * 295.11912 * 20 19 18 49 49 H 1.09000 * 109.66135 * 174.54822 * 20 19 18 50 50 H 0.97003 * 120.00055 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 1 1.7689 -0.1672 -2.1365 6 7 1.4566 -2.0683 -1.3068 7 6 1.3362 -2.6972 -2.4927 8 8 1.7168 -2.1529 -3.5107 9 6 0.7412 -4.0495 -2.5555 10 7 0.2816 -4.7617 -1.5105 11 6 -0.1629 -5.8991 -1.9808 12 7 0.0227 -5.8892 -3.3137 13 6 -0.3346 -6.9703 -4.2357 14 6 -1.8506 -6.9847 -4.4417 15 6 0.3607 -6.7449 -5.5799 16 6 0.1130 -8.3102 -3.6483 17 7 0.5628 -4.7667 -3.6432 18 6 3.5706 -0.8443 -1.1674 19 6 3.9602 -1.6607 0.0671 20 6 3.4660 -0.9374 1.3291 21 7 2.0226 -0.6981 1.1954 22 6 1.1534 -1.1125 2.1690 23 1 0.1394 -1.3792 1.9098 24 6 1.5757 -1.1899 3.4891 25 7 2.6841 -0.5861 3.8620 26 14 0.5706 -2.1510 4.7363 27 1 -0.3542 -1.2287 5.4430 28 1 -0.2147 -3.1996 4.0370 29 1 1.4816 -2.7886 5.7205 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1525 -2.5026 -0.4945 34 1 -0.5995 -6.7007 -1.4038 35 1 -2.1695 -6.0300 -4.8602 36 1 -2.1164 -7.7887 -5.1280 37 1 -2.3459 -7.1452 -3.4841 38 1 1.4406 -6.7346 -5.4331 39 1 0.0945 -7.5490 -6.2660 40 1 0.0417 -5.7903 -5.9983 41 1 -0.3823 -8.4708 -2.6907 42 1 -0.1532 -9.1146 -4.3341 43 1 1.1931 -8.3000 -3.5016 44 1 3.9430 -1.3407 -2.0634 45 1 4.0071 0.1519 -1.0961 46 1 3.5037 -2.6488 0.0087 47 1 5.0446 -1.7629 0.1083 48 1 3.9860 0.0146 1.4352 49 1 3.6538 -1.5585 2.2050 50 1 2.9794 -0.6405 4.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993834105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:25 Heat of formation + Delta-G solvation = 73.325232 kcal Electronic energy + Delta-G solvation = -30543.484678 eV Core-core repulsion = 26608.336410 eV Total energy + Delta-G solvation = -3935.148268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.47555 -39.52628 -37.74790 -37.23528 -33.90175 -32.75090 -32.21796 -31.59724 -30.94008 -29.29888 -28.02849 -27.90047 -26.31181 -25.00694 -24.44121 -23.04430 -21.88579 -20.75542 -20.35239 -20.12352 -18.60662 -17.81473 -16.60245 -16.59963 -16.35828 -15.55522 -15.05490 -14.78588 -14.62360 -14.50353 -14.24230 -13.93475 -13.70423 -13.34060 -13.17743 -13.02971 -12.89295 -12.85827 -12.79120 -12.49007 -12.31029 -12.13111 -11.79963 -11.77733 -11.41365 -11.20213 -11.15706 -10.91973 -10.61811 -10.56138 -10.44409 -10.38379 -10.29911 -10.05347 -9.94606 -9.79031 -9.57876 -9.49296 -9.22845 -8.48060 -8.37184 -6.60443 -5.74490 -3.18886 1.51995 2.04306 2.23013 3.39976 3.42938 3.47683 3.50381 3.70510 3.92620 4.16074 4.25623 4.26874 4.52282 4.66237 4.89990 4.92740 5.05786 5.09035 5.20408 5.22065 5.30052 5.37568 5.40227 5.43791 5.61304 5.63899 5.67612 5.80047 5.82005 6.02886 6.09309 6.20146 6.30179 6.37514 6.39736 6.49062 6.52853 6.59637 6.74650 6.75995 6.84937 7.00465 7.04964 7.15931 7.45415 7.72807 7.86180 7.92840 8.24430 8.49151 8.64818 9.25175 9.88100 10.45204 11.33619 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.003446 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.674125 B = 8124.161770 C = 9263.563509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.041 0.959 4 C 0.134 3.866 5 H 0.078 0.922 6 N -0.677 5.677 7 C 0.608 3.392 8 O -0.537 6.537 9 C 0.145 3.855 10 N -0.474 5.474 11 C 0.185 3.815 12 N -0.297 5.297 13 C 0.168 3.832 14 C -0.160 4.160 15 C -0.148 4.148 16 C -0.160 4.160 17 N -0.253 5.253 18 C -0.121 4.121 19 C -0.142 4.142 20 C 0.172 3.828 21 N -0.586 5.586 22 C -0.251 4.251 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.898 3.102 27 H -0.289 1.289 28 H -0.277 1.277 29 H -0.291 1.291 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.419 0.581 34 H 0.219 0.781 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.019 0.981 49 H 0.086 0.914 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.316 -14.833 -15.467 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.059 0.941 4 C 0.028 3.972 5 H 0.096 0.904 6 N -0.329 5.329 7 C 0.389 3.611 8 O -0.412 6.412 9 C -0.135 4.135 10 N -0.199 5.199 11 C -0.110 4.110 12 N -0.094 5.094 13 C 0.085 3.915 14 C -0.218 4.218 15 C -0.206 4.206 16 C -0.218 4.218 17 N -0.091 5.091 18 C -0.160 4.160 19 C -0.181 4.181 20 C 0.047 3.953 21 N -0.309 5.309 22 C -0.380 4.380 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.728 3.272 27 H -0.216 1.216 28 H -0.203 1.203 29 H -0.218 1.218 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.257 0.743 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.037 0.963 49 H 0.104 0.896 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.782 -14.061 -16.288 22.281 hybrid contribution -0.699 -1.086 1.281 1.819 sum -6.481 -15.147 -15.007 22.285 Atomic orbital electron populations 1.21797 0.95594 1.01630 1.00455 1.20714 0.93417 0.93867 0.86712 0.94105 1.21643 0.93067 0.82353 1.00120 0.90367 1.45751 1.60244 1.18174 1.08716 1.16343 0.78674 0.81543 0.84509 1.90768 1.50242 1.65629 1.34599 1.23944 1.05617 0.98597 0.85351 1.71390 1.15057 1.03354 1.30099 1.26327 1.02489 0.98806 0.83410 1.47775 1.41427 1.12432 1.07774 1.21115 0.96664 0.83902 0.89777 1.22266 0.92067 1.03987 1.03473 1.21988 1.01391 1.03650 0.93539 1.22259 1.02987 0.94320 1.02272 1.74266 1.14313 0.94476 1.26020 1.21780 0.95279 1.00572 0.98357 1.22227 0.98880 0.99694 0.97282 1.20882 0.83096 0.97061 0.94281 1.44177 1.03042 1.64951 1.18745 1.19161 0.95191 1.37571 0.86109 0.91187 1.25072 0.97830 0.99489 0.96962 1.70029 1.24225 1.43742 1.16579 0.86344 0.79416 0.80030 0.81388 1.21631 1.20267 1.21750 0.91695 0.94214 0.92627 0.74285 0.76425 0.91249 0.89714 0.91299 0.91273 0.90457 0.90534 0.91070 0.89442 0.91116 0.93071 0.91714 0.92734 0.93507 0.96337 0.89574 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.74 37.16 0.29 -2.33 16 2 C 0.16 3.29 3.19 -67.60 -0.22 3.07 16 3 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.13 2.55 2.33 -67.82 -0.16 2.39 16 5 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 6 N -0.68 -12.91 3.46 -54.63 -0.19 -13.10 16 7 C 0.61 11.85 7.80 -12.32 -0.10 11.75 16 8 O -0.54 -11.58 16.75 5.32 0.09 -11.49 16 9 C 0.14 2.57 7.96 -156.35 -1.24 1.32 16 10 N -0.47 -7.67 11.09 -12.37 -0.14 -7.81 16 11 C 0.19 2.17 11.71 -90.49 -1.06 1.11 16 12 N -0.30 -3.44 3.16 -49.83 -0.16 -3.60 16 13 C 0.17 1.21 1.23 -131.81 -0.16 1.05 16 14 C -0.16 -0.88 8.72 37.16 0.32 -0.55 16 15 C -0.15 -1.09 8.05 37.16 0.30 -0.79 16 16 C -0.16 -0.75 8.28 37.16 0.31 -0.45 16 17 N -0.25 -3.99 11.09 32.08 0.36 -3.64 16 18 C -0.12 -2.26 5.58 -26.69 -0.15 -2.41 16 19 C -0.14 -2.83 5.95 -26.38 -0.16 -2.98 16 20 C 0.17 4.05 5.31 -3.49 -0.02 4.03 16 21 N -0.59 -13.92 2.64 -164.51 -0.43 -14.36 16 22 C -0.25 -6.50 8.57 -15.06 -0.13 -6.63 16 23 H 0.07 1.78 6.24 -52.49 -0.33 1.45 16 24 C 0.01 0.14 4.94 -17.43 -0.09 0.05 16 25 N -0.90 -25.63 11.21 55.49 0.62 -25.00 16 26 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H 0.06 1.31 7.63 -51.93 -0.40 0.91 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 1.08 6.40 -51.93 -0.33 0.75 16 33 H 0.42 8.45 7.49 -40.82 -0.31 8.15 16 34 H 0.22 1.52 7.53 -52.49 -0.40 1.13 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 41 H 0.07 0.26 7.34 -51.93 -0.38 -0.12 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.96 8.14 -51.94 -0.42 0.53 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.05 1.14 7.53 -51.93 -0.39 0.75 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 2.27 6.12 -51.93 -0.32 1.95 16 50 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -32.71 393.70 -9.49 -42.20 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.29 Total: 5.92 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -2.26 Total: 8.63 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: 0.06 Total: -67.51 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.71 -9.49 -42.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993834105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.522 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds