Wall clock time and date at job start Wed Apr 1 2020 00:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58768 * 2 1 4 4 C 1.53187 * 109.70521 * 239.64254 * 2 1 3 5 5 H 1.09007 * 109.49635 * 65.55730 * 4 2 1 6 6 N 1.46494 * 109.50158 * 305.49575 * 4 2 1 7 7 C 1.34772 * 120.00712 * 154.99720 * 6 4 2 8 8 O 1.21553 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.47875 * 120.00313 * 179.97438 * 7 6 4 10 10 N 1.34551 * 126.04872 * 0.02562 * 9 7 6 11 11 C 1.30864 * 107.26999 * 179.97438 * 10 9 7 12 12 N 1.34583 * 107.62372 * 0.02562 * 11 10 9 13 13 C 1.46508 * 125.74861 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46692 * 74.99619 * 13 12 11 15 15 C 1.52999 * 109.47194 * 194.99798 * 13 12 11 16 16 C 1.52998 * 109.46842 * 315.00144 * 13 12 11 17 17 N 1.28847 * 108.50843 * 359.72888 * 12 11 10 18 18 C 1.53042 * 109.31736 * 185.50542 * 4 2 1 19 19 C 1.53044 * 109.53347 * 61.36358 * 18 4 2 20 20 C 1.53625 * 109.24557 * 298.51395 * 19 18 4 21 21 N 1.46926 * 108.53944 * 54.85766 * 20 19 18 22 22 C 1.36938 * 120.63142 * 126.37188 * 21 20 19 23 23 H 1.08002 * 119.99923 * 209.40213 * 22 21 20 24 24 C 1.38816 * 119.99738 * 29.39726 * 22 21 20 25 25 N 1.31616 * 120.00067 * 15.71889 * 24 22 21 26 26 Si 1.86800 * 119.99693 * 195.71918 * 24 22 21 27 27 H 1.48501 * 109.46756 * 265.65557 * 26 24 22 28 28 H 1.48501 * 109.47414 * 25.65218 * 26 24 22 29 29 H 1.48495 * 109.46987 * 145.65653 * 26 24 22 30 30 H 1.09000 * 109.47456 * 299.71528 * 1 2 3 31 31 H 1.08995 * 109.47084 * 59.71793 * 1 2 3 32 32 H 1.09001 * 109.47118 * 179.71809 * 1 2 3 33 33 H 0.97002 * 119.99508 * 334.99487 * 6 4 2 34 34 H 1.07995 * 126.18896 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.46894 * 60.00521 * 14 13 12 36 36 H 1.09001 * 109.46426 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47449 * 300.00159 * 14 13 12 38 38 H 1.08996 * 109.47008 * 60.00045 * 15 13 12 39 39 H 1.09004 * 109.46845 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47029 * 299.99965 * 15 13 12 41 41 H 1.08999 * 109.47397 * 59.99781 * 16 13 12 42 42 H 1.09004 * 109.46755 * 179.97438 * 16 13 12 43 43 H 1.09001 * 109.47103 * 299.99044 * 16 13 12 44 44 H 1.08989 * 109.46292 * 181.38757 * 18 4 2 45 45 H 1.08997 * 109.45874 * 301.36665 * 18 4 2 46 46 H 1.09005 * 109.49786 * 58.59233 * 19 18 4 47 47 H 1.08997 * 109.49665 * 178.65177 * 19 18 4 48 48 H 1.08996 * 109.73656 * 295.11912 * 20 19 18 49 49 H 1.09000 * 109.66135 * 174.54822 * 20 19 18 50 50 H 0.97003 * 120.00055 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2444 5 1 1.7689 -0.1672 -2.1365 6 7 1.4566 -2.0683 -1.3068 7 6 1.3362 -2.6972 -2.4927 8 8 1.7168 -2.1529 -3.5107 9 6 0.7412 -4.0495 -2.5555 10 7 0.2816 -4.7617 -1.5105 11 6 -0.1629 -5.8991 -1.9808 12 7 0.0227 -5.8892 -3.3137 13 6 -0.3346 -6.9703 -4.2357 14 6 -1.8506 -6.9847 -4.4417 15 6 0.3607 -6.7449 -5.5799 16 6 0.1130 -8.3102 -3.6483 17 7 0.5628 -4.7667 -3.6432 18 6 3.5706 -0.8443 -1.1674 19 6 3.9602 -1.6607 0.0671 20 6 3.4660 -0.9374 1.3291 21 7 2.0226 -0.6981 1.1954 22 6 1.1534 -1.1125 2.1690 23 1 0.1394 -1.3792 1.9098 24 6 1.5757 -1.1899 3.4891 25 7 2.6841 -0.5861 3.8620 26 14 0.5706 -2.1510 4.7363 27 1 -0.3542 -1.2287 5.4430 28 1 -0.2147 -3.1996 4.0370 29 1 1.4816 -2.7886 5.7205 30 1 -0.3634 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.1525 -2.5026 -0.4945 34 1 -0.5995 -6.7007 -1.4038 35 1 -2.1695 -6.0300 -4.8602 36 1 -2.1164 -7.7887 -5.1280 37 1 -2.3459 -7.1452 -3.4841 38 1 1.4406 -6.7346 -5.4331 39 1 0.0945 -7.5490 -6.2660 40 1 0.0417 -5.7903 -5.9983 41 1 -0.3823 -8.4708 -2.6907 42 1 -0.1532 -9.1146 -4.3341 43 1 1.1931 -8.3000 -3.5016 44 1 3.9430 -1.3407 -2.0634 45 1 4.0071 0.1519 -1.0961 46 1 3.5037 -2.6488 0.0087 47 1 5.0446 -1.7629 0.1083 48 1 3.9860 0.0146 1.4352 49 1 3.6538 -1.5585 2.2050 50 1 2.9794 -0.6405 4.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993834105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:24 Heat of formation + Delta-G solvation = 54.297160 kcal Electronic energy + Delta-G solvation = -30544.309797 eV Core-core repulsion = 26608.336410 eV Total energy + Delta-G solvation = -3935.973387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.51416 -41.07966 -39.14180 -38.17903 -35.65073 -34.13747 -33.65291 -33.25951 -32.08608 -30.99322 -28.48396 -28.40114 -27.95326 -26.86008 -25.74472 -24.00531 -23.60311 -22.39931 -21.70188 -21.08372 -20.26338 -18.96559 -18.24617 -17.60058 -17.54144 -17.12720 -16.67610 -16.16275 -15.87130 -15.69512 -15.32770 -15.15461 -15.05486 -14.89074 -14.59943 -14.51111 -14.22981 -13.77777 -13.56006 -13.29530 -13.23777 -13.02090 -12.94400 -12.86822 -12.76966 -12.71812 -12.40724 -12.38403 -12.32652 -12.18181 -11.99623 -11.91024 -11.67760 -11.44090 -11.40800 -11.38271 -11.30059 -11.02038 -10.55867 -10.46554 -9.96077 -8.57803 -7.78457 -5.24312 0.34827 1.13358 1.20010 1.50566 1.53302 1.62386 2.11972 2.31737 2.57291 3.15604 3.30484 3.37849 3.61055 3.66607 3.76666 3.79979 3.88778 4.02356 4.05869 4.20977 4.39188 4.56104 4.57098 4.59036 4.61500 4.67512 4.68800 4.74835 4.77889 4.80381 4.94263 4.95081 4.99250 5.03601 5.09977 5.12060 5.18065 5.21315 5.21752 5.34621 5.40661 5.46271 5.54240 5.59992 5.70549 5.77464 5.81764 6.47680 6.49888 6.99959 7.18196 7.23326 7.92497 8.45714 9.28194 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013571 B = 0.003446 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.674125 B = 8124.161770 C = 9263.563509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.158 3.842 3 H 0.041 0.959 4 C 0.141 3.859 5 H 0.086 0.914 6 N -0.674 5.674 7 C 0.609 3.391 8 O -0.566 6.566 9 C 0.113 3.887 10 N -0.508 5.508 11 C 0.198 3.802 12 N -0.286 5.286 13 C 0.156 3.844 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.156 4.156 17 N -0.267 5.267 18 C -0.115 4.115 19 C -0.127 4.127 20 C 0.181 3.819 21 N -0.596 5.596 22 C -0.245 4.245 23 H 0.075 0.925 24 C -0.048 4.048 25 N -0.935 5.935 26 Si 0.958 3.042 27 H -0.290 1.290 28 H -0.267 1.267 29 H -0.298 1.298 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.414 0.586 34 H 0.267 0.733 35 H 0.046 0.954 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.063 0.937 48 H 0.001 0.999 49 H 0.055 0.945 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 -17.444 -16.662 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.052 3.948 3 H 0.058 0.942 4 C 0.035 3.965 5 H 0.104 0.896 6 N -0.324 5.324 7 C 0.392 3.608 8 O -0.443 6.443 9 C -0.165 4.165 10 N -0.234 5.234 11 C -0.097 4.097 12 N -0.083 5.083 13 C 0.076 3.924 14 C -0.213 4.213 15 C -0.205 4.205 16 C -0.214 4.214 17 N -0.108 5.108 18 C -0.154 4.154 19 C -0.166 4.166 20 C 0.055 3.945 21 N -0.320 5.320 22 C -0.375 4.375 23 H 0.092 0.908 24 C -0.243 4.243 25 N -0.581 5.581 26 Si 0.787 3.213 27 H -0.217 1.217 28 H -0.192 1.192 29 H -0.225 1.225 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.251 0.749 34 H 0.282 0.718 35 H 0.066 0.934 36 H 0.134 0.866 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.135 0.865 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.019 0.981 49 H 0.073 0.927 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.483 -16.692 -17.515 25.325 hybrid contribution -0.227 -0.363 1.529 1.588 sum -7.710 -17.054 -15.986 24.614 Atomic orbital electron populations 1.21702 0.94404 1.01435 1.01034 1.20841 0.94428 0.93632 0.85919 0.94187 1.21526 0.93205 0.82473 0.99343 0.89616 1.45685 1.60196 1.18041 1.08504 1.16559 0.78080 0.82259 0.83922 1.90733 1.51605 1.66679 1.35291 1.23565 1.07911 0.98532 0.86523 1.71313 1.16439 1.05024 1.30589 1.27143 1.00599 0.98387 0.83568 1.48241 1.39580 1.11831 1.08661 1.21688 0.98006 0.83716 0.89029 1.22288 0.90309 1.03993 1.04745 1.22012 1.00214 1.03762 0.94527 1.22307 1.02188 0.93124 1.03789 1.74188 1.14706 0.95862 1.26021 1.21733 0.95127 1.00963 0.97546 1.22032 0.99739 0.98775 0.96065 1.20660 0.83239 0.95861 0.94738 1.44342 1.02912 1.65530 1.19248 1.19436 0.95478 1.36133 0.86478 0.90753 1.25737 0.99013 1.00879 0.98714 1.70175 1.25954 1.45595 1.16423 0.85404 0.77921 0.78862 0.79146 1.21738 1.19213 1.22493 0.93021 0.91648 0.93176 0.74860 0.71769 0.93431 0.86635 0.90198 0.93099 0.87009 0.92913 0.89388 0.86549 0.92538 0.92729 0.90544 0.93685 0.91796 0.98107 0.92703 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 7.74 71.98 0.56 -4.24 16 2 C 0.16 6.45 3.19 44.97 0.14 6.59 16 3 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.14 5.27 2.33 45.07 0.10 5.37 16 5 H 0.09 3.13 7.58 -2.38 -0.02 3.11 16 6 N -0.67 -25.71 3.46 -445.02 -1.54 -27.25 16 7 C 0.61 23.94 7.80 86.80 0.68 24.62 16 8 O -0.57 -24.64 16.75 -3.88 -0.07 -24.71 16 9 C 0.11 4.02 7.96 137.13 1.09 5.11 16 10 N -0.51 -16.02 11.09 -193.03 -2.14 -18.16 16 11 C 0.20 4.19 11.71 180.30 2.11 6.30 16 12 N -0.29 -6.16 3.16 -311.57 -0.99 -7.15 16 13 C 0.16 1.84 1.23 3.60 0.00 1.84 16 14 C -0.16 -1.20 8.72 71.98 0.63 -0.57 16 15 C -0.15 -1.95 8.05 71.98 0.58 -1.37 16 16 C -0.16 -0.87 8.28 71.98 0.60 -0.27 16 17 N -0.27 -8.41 11.09 -52.43 -0.58 -8.99 16 18 C -0.12 -4.22 5.58 30.62 0.17 -4.05 16 19 C -0.13 -5.06 5.95 30.82 0.18 -4.88 16 20 C 0.18 8.67 5.31 86.51 0.46 9.13 16 21 N -0.60 -28.65 2.64 -674.39 -1.78 -30.43 16 22 C -0.25 -12.79 8.57 84.03 0.72 -12.07 16 23 H 0.07 3.77 6.24 -2.91 -0.02 3.75 16 24 C -0.05 -2.63 4.94 84.86 0.42 -2.21 16 25 N -0.93 -54.51 11.21 21.65 0.24 -54.27 16 26 Si 0.96 44.35 29.58 68.60 2.03 46.38 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 30 H 0.05 2.05 7.63 -2.39 -0.02 2.03 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.92 6.40 -2.39 -0.02 1.90 16 33 H 0.41 16.80 7.49 -92.71 -0.69 16.10 16 34 H 0.27 2.58 7.53 -2.91 -0.02 2.56 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.05 0.95 8.02 -2.39 -0.02 0.93 16 41 H 0.09 0.22 7.34 -2.39 -0.02 0.21 16 42 H 0.12 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.04 1.88 7.53 -2.38 -0.02 1.86 16 47 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.05 2.98 6.12 -2.39 -0.01 2.97 16 50 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -73.73 393.70 3.87 -69.86 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.24 Total: 25.43 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 8.45 Total: 29.29 kcal Atomic # 7 Polarization: -139.47 SS G_CDS: -6.79 Total: -146.25 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.07 Total: -24.71 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -73.73 3.87 -69.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993834105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.161 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds