Wall clock time and date at job start Wed Apr 1 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 N 1.46503 * 109.46729 * 120.00014 * 2 1 3 5 5 C 1.34821 * 126.59063 * 275.26862 * 4 2 1 6 6 C 1.36596 * 106.83540 * 180.15386 * 5 4 2 7 7 C 1.47523 * 125.77225 * 179.89901 * 6 5 4 8 8 O 1.21594 * 119.99574 * 359.71409 * 7 6 5 9 9 N 1.34775 * 120.00245 * 179.71594 * 7 6 5 10 10 C 1.46499 * 119.99867 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.47474 * 325.00256 * 10 9 7 12 12 C 1.53008 * 109.47000 * 84.99979 * 10 9 7 13 13 C 1.52997 * 109.46963 * 204.99818 * 10 9 7 14 14 C 1.53042 * 109.46198 * 300.02324 * 13 10 9 15 15 C 1.53197 * 109.31328 * 178.59824 * 14 13 10 16 16 N 1.46925 * 108.75972 * 54.66217 * 15 14 13 17 17 C 1.36937 * 120.62911 * 126.40742 * 16 15 14 18 18 H 1.08007 * 119.99800 * 332.60159 * 17 16 15 19 19 C 1.38812 * 120.00115 * 152.60599 * 17 16 15 20 20 N 1.31623 * 119.99977 * 159.34381 * 19 17 16 21 21 Si 1.86802 * 119.99938 * 339.33922 * 19 17 16 22 22 H 1.48499 * 109.46903 * 92.94551 * 21 19 17 23 23 H 1.48498 * 109.47221 * 212.94348 * 21 19 17 24 24 H 1.48502 * 109.47004 * 332.94717 * 21 19 17 25 25 C 1.46924 * 118.74056 * 306.37735 * 16 15 14 26 26 C 1.53046 * 109.45942 * 179.97438 * 13 10 9 27 27 N 1.34403 * 108.45840 * 359.63353 * 6 5 4 28 28 N 1.28760 * 109.52677 * 0.22866 * 27 6 5 29 29 H 1.08992 * 109.47196 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47166 * 300.00828 * 1 2 3 31 31 H 1.09001 * 109.47121 * 59.99537 * 1 2 3 32 32 H 1.09001 * 109.47079 * 239.99935 * 2 1 3 33 33 H 1.08998 * 109.47275 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47061 * 300.00064 * 3 2 1 35 35 H 1.09001 * 109.47105 * 59.99950 * 3 2 1 36 36 H 1.07995 * 126.58547 * 0.02562 * 5 4 2 37 37 H 0.97002 * 120.00145 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.46684 * 179.97438 * 12 10 9 39 39 H 1.08999 * 109.47048 * 60.00216 * 12 10 9 40 40 H 1.08993 * 109.46809 * 299.99387 * 12 10 9 41 41 H 1.09003 * 109.46254 * 60.00202 * 13 10 9 42 42 H 1.08995 * 109.50036 * 298.56850 * 14 13 10 43 43 H 1.09009 * 109.49303 * 58.66799 * 14 13 10 44 44 H 1.08992 * 109.59767 * 294.87533 * 15 14 13 45 45 H 1.08998 * 109.70047 * 174.50823 * 15 14 13 46 46 H 0.96999 * 120.00002 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.58815 * 293.82883 * 25 16 15 48 48 H 1.09000 * 109.70390 * 173.46807 * 25 16 15 49 49 H 1.08993 * 109.49729 * 301.33620 * 26 13 10 50 50 H 1.09003 * 109.49523 * 61.43581 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1924 -0.1526 2.4201 6 6 2.6641 -1.1488 3.2268 7 6 3.0003 -1.0140 4.6569 8 8 2.8685 0.0588 5.2138 9 7 3.4536 -2.0799 5.3460 10 6 3.7880 -1.9458 6.7660 11 1 4.2085 -0.9568 6.9485 12 6 2.5224 -2.1249 7.6071 13 6 4.8123 -3.0147 7.1518 14 6 4.2218 -4.4031 6.8950 15 6 5.2627 -5.4699 7.2494 16 7 5.7114 -5.2515 8.6313 17 6 5.6634 -6.2666 9.5491 18 1 4.9339 -7.0560 9.4435 19 6 6.5523 -6.2811 10.6151 20 7 6.2751 -6.9829 11.6937 21 14 8.1420 -5.3049 10.5190 22 1 7.9339 -3.9604 11.1142 23 1 9.2072 -6.0184 11.2684 24 1 8.5486 -5.1597 9.0982 25 6 6.2133 -3.9235 9.0096 26 6 5.1620 -2.8740 8.6351 27 7 2.7646 -2.2742 2.4988 28 7 2.3898 -2.0394 1.2896 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.9984 0.8703 2.7070 37 1 3.5584 -2.9358 4.9017 38 1 2.7714 -2.0256 8.6636 39 1 2.1019 -3.1139 7.4246 40 1 1.7928 -1.3634 7.3322 41 1 5.7138 -2.8870 6.5525 42 1 3.3344 -4.5410 7.5127 43 1 3.9513 -4.4944 5.8430 44 1 6.1129 -5.3902 6.5722 45 1 4.8175 -6.4609 7.1621 46 1 6.8965 -6.9933 12.4385 47 1 7.1411 -3.7178 8.4758 48 1 6.3949 -3.8915 10.0839 49 1 5.5606 -1.8770 8.8219 50 1 4.2655 -3.0265 9.2362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997814062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:38 Heat of formation + Delta-G solvation = 74.486772 kcal Electronic energy + Delta-G solvation = -29276.412691 eV Core-core repulsion = 25341.314792 eV Total energy + Delta-G solvation = -3935.097900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -42.54187 -39.84016 -38.17559 -36.96541 -35.46819 -32.92590 -31.92281 -31.59346 -30.81748 -30.27082 -29.01386 -28.10886 -25.58543 -24.72655 -23.89738 -23.16807 -22.47278 -21.24937 -20.90417 -20.34359 -18.88024 -18.30727 -16.73240 -16.51147 -16.39912 -16.08974 -15.38501 -15.16801 -14.95926 -14.82285 -14.48165 -14.18317 -13.95485 -13.84747 -13.48844 -13.32030 -13.28978 -13.05583 -12.90786 -12.58221 -12.53941 -12.26346 -12.14879 -11.92806 -11.83106 -11.70647 -11.63476 -11.49877 -10.99898 -10.72317 -10.64760 -10.54673 -10.36559 -10.20869 -10.04787 -9.73820 -9.60028 -9.54833 -9.37337 -9.00564 -8.56152 -6.91428 -5.90209 -3.25123 0.83636 1.50503 1.61880 3.09343 3.19374 3.35972 3.52319 3.55715 3.72765 3.92793 4.04878 4.24877 4.41428 4.57661 4.60858 4.72608 4.77030 4.89120 4.92330 4.94721 5.03909 5.09947 5.10927 5.26388 5.33401 5.38194 5.46044 5.52101 5.59416 5.63053 5.80242 5.94036 5.97634 6.02824 6.08428 6.15858 6.21645 6.31761 6.41481 6.52426 6.55630 6.57423 6.71462 6.72007 6.78070 7.05988 7.42658 7.72594 8.02074 8.14023 8.37893 9.00031 9.77655 10.16287 11.25915 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.002182 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.701498 B =12831.671631 C =13069.268770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.169 4.169 4 N -0.357 5.357 5 C 0.093 3.907 6 C -0.100 4.100 7 C 0.603 3.397 8 O -0.544 6.544 9 N -0.705 5.705 10 C 0.146 3.854 11 H 0.086 0.914 12 C -0.164 4.164 13 C -0.087 4.087 14 C -0.132 4.132 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.257 4.257 18 H 0.085 0.915 19 C 0.021 3.979 20 N -0.910 5.910 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.126 3.874 26 C -0.127 4.127 27 N -0.204 5.204 28 N -0.065 5.065 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.201 0.799 37 H 0.408 0.592 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.063 0.937 46 H 0.262 0.738 47 H 0.023 0.977 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 18.530 -24.607 32.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.228 4.228 4 N -0.142 5.142 5 C -0.064 4.064 6 C -0.240 4.240 7 C 0.387 3.613 8 O -0.421 6.421 9 N -0.356 5.356 10 C 0.043 3.957 11 H 0.104 0.896 12 C -0.222 4.222 13 C -0.106 4.106 14 C -0.171 4.171 15 C 0.023 3.977 16 N -0.329 5.329 17 C -0.385 4.385 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.553 5.553 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.001 3.999 26 C -0.167 4.167 27 N -0.077 5.077 28 N -0.045 5.045 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.245 0.755 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.039 0.961 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.276 17.880 -24.827 32.607 hybrid contribution 0.834 1.105 0.187 1.397 sum -10.442 18.985 -24.640 32.812 Atomic orbital electron populations 1.22265 0.92415 1.03947 1.03885 1.21655 0.95727 0.93435 0.84997 1.22275 1.02747 0.93287 1.04448 1.50778 1.44537 1.09832 1.09089 1.23253 0.97476 1.01121 0.84561 1.21545 1.14398 0.90711 0.97313 1.16765 0.77072 0.84304 0.83150 1.90795 1.54653 1.27103 1.69547 1.46028 1.65274 1.12790 1.11477 1.21143 0.95700 1.00321 0.78560 0.89558 1.22247 0.97348 1.02108 1.00492 1.21323 0.97124 0.94260 0.97872 1.22130 1.00347 0.95088 0.99554 1.20905 0.94296 0.96581 0.85934 1.44347 1.75252 1.06810 1.06523 1.18927 1.13219 1.03646 1.02695 0.89759 1.25284 0.98224 0.97843 0.96382 1.69843 1.36529 1.44311 1.04610 0.86945 0.85324 0.78578 0.77784 1.21656 1.23284 1.19639 1.21317 0.93980 0.85152 0.99482 1.22086 1.01265 0.98927 0.94386 1.74653 1.11053 1.23250 0.98769 1.82007 1.18303 0.91730 1.12439 0.91144 0.91412 0.89624 0.86736 0.91045 0.89212 0.91012 0.78193 0.75511 0.90902 0.91872 0.92796 0.91185 0.91188 0.93023 0.96123 0.91898 0.92855 0.95902 0.90940 0.92658 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 9.52 37.16 0.35 -0.15 16 2 C 0.14 0.57 3.96 -67.93 -0.27 0.30 16 3 C -0.17 -0.36 8.85 37.16 0.33 -0.03 16 4 N -0.36 -2.86 3.54 -54.56 -0.19 -3.05 16 5 C 0.09 0.81 10.40 -16.83 -0.18 0.64 16 6 C -0.10 -1.19 6.99 -83.55 -0.58 -1.77 16 7 C 0.60 8.15 7.78 -12.48 -0.10 8.05 16 8 O -0.54 -8.46 16.53 5.28 0.09 -8.37 16 9 N -0.70 -9.18 4.99 -54.85 -0.27 -9.46 16 10 C 0.15 2.01 2.40 -67.93 -0.16 1.85 16 11 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 12 C -0.16 -2.21 8.78 37.16 0.33 -1.88 16 13 C -0.09 -1.32 2.14 -90.58 -0.19 -1.51 16 14 C -0.13 -2.09 4.81 -26.61 -0.13 -2.22 16 15 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 16 N -0.61 -14.34 2.77 -172.32 -0.48 -14.82 16 17 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 18 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 19 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 20 N -0.91 -28.11 13.97 55.49 0.78 -27.34 16 21 Si 0.88 22.67 24.35 -169.99 -4.14 18.53 16 22 H -0.29 -7.14 6.62 56.52 0.37 -6.77 16 23 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 24 H -0.27 -6.87 6.63 56.52 0.37 -6.50 16 25 C 0.13 2.75 4.20 -3.71 -0.02 2.73 16 26 C -0.13 -2.20 4.97 -26.61 -0.13 -2.33 16 27 N -0.20 -2.59 12.04 32.85 0.40 -2.19 16 28 N -0.07 -0.75 13.78 60.35 0.83 0.09 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 35 H 0.07 0.13 7.23 -51.93 -0.38 -0.24 16 36 H 0.20 1.19 7.35 -52.49 -0.39 0.80 16 37 H 0.41 5.07 6.53 -40.82 -0.27 4.80 16 38 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 39 H 0.06 0.85 6.46 -51.93 -0.34 0.52 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.16 6.51 -51.93 -0.34 0.83 16 43 H 0.05 0.70 6.46 -51.92 -0.34 0.36 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 48 H 0.07 1.74 4.50 -51.93 -0.23 1.50 16 49 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.07 1.28 6.51 -51.93 -0.34 0.94 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -34.25 387.30 -6.13 -40.38 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.96 Total: 0.65 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.02 Total: -0.26 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 1.06 Total: -56.77 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.25 -6.13 -40.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997814062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.866 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds