Wall clock time and date at job start Wed Apr 1 2020 00:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.49797 * 2 1 4 4 C 1.53186 * 109.49819 * 120.06962 * 2 1 3 5 5 N 1.46929 * 108.77416 * 174.58218 * 4 2 1 6 6 C 1.34775 * 120.62776 * 126.37123 * 5 4 2 7 7 O 1.21603 * 120.00497 * 352.70989 * 6 5 4 8 8 C 1.47524 * 120.00222 * 172.70835 * 6 5 4 9 9 C 1.36591 * 125.77595 * 172.62830 * 8 6 5 10 10 N 1.34816 * 106.84209 * 179.97438 * 9 8 6 11 11 C 1.46496 * 126.59240 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47308 * 74.99736 * 11 10 9 13 13 C 1.53001 * 109.46924 * 194.99405 * 11 10 9 14 14 C 1.53004 * 109.47370 * 314.99298 * 11 10 9 15 15 N 1.40212 * 106.80930 * 359.97438 * 10 9 8 16 16 N 1.28760 * 108.36622 * 359.75330 * 15 10 9 17 17 C 1.46918 * 118.74094 * 306.39295 * 5 4 2 18 18 C 1.53186 * 108.77723 * 53.60801 * 17 5 4 19 19 C 1.53044 * 109.49173 * 239.90747 * 2 1 3 20 20 H 1.08995 * 109.46222 * 58.67960 * 19 2 1 21 21 N 1.46494 * 109.46011 * 298.69908 * 19 2 1 22 22 C 1.36939 * 119.99894 * 155.00125 * 21 19 2 23 23 H 1.08005 * 119.99725 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00216 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00164 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47389 * 59.99702 * 26 24 22 28 28 H 1.48499 * 109.47394 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47424 * 299.99854 * 26 24 22 30 30 H 1.09008 * 109.46690 * 299.93650 * 1 2 3 31 31 H 1.08997 * 109.47430 * 59.92637 * 1 2 3 32 32 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.58659 * 54.79790 * 4 2 1 34 34 H 1.09003 * 109.70555 * 294.44441 * 4 2 1 35 35 H 1.08004 * 126.57568 * 359.95419 * 9 8 6 36 36 H 1.08997 * 109.47247 * 59.99725 * 12 11 10 37 37 H 1.09007 * 109.47227 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.46977 * 299.99236 * 12 11 10 39 39 H 1.09006 * 109.47047 * 60.00336 * 13 11 10 40 40 H 1.08999 * 109.47318 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47204 * 300.00014 * 13 11 10 42 42 H 1.09001 * 109.46668 * 60.00250 * 14 11 10 43 43 H 1.08991 * 109.47341 * 180.02562 * 14 11 10 44 44 H 1.09002 * 109.47104 * 300.00564 * 14 11 10 45 45 H 1.08999 * 109.58777 * 173.39725 * 17 5 4 46 46 H 1.09005 * 109.58590 * 293.82304 * 17 5 4 47 47 H 1.08997 * 109.49778 * 65.31446 * 18 17 5 48 48 H 1.09007 * 109.50087 * 185.41871 * 18 17 5 49 49 H 0.96996 * 120.00844 * 335.00945 * 21 19 2 50 50 H 0.96995 * 120.00036 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5046 -0.8289 1.1696 6 6 4.2812 -0.3852 2.1778 7 8 3.7845 0.2262 3.1042 8 6 5.7339 -0.6413 2.1577 9 6 6.6472 -0.1298 3.0352 10 7 7.8527 -0.6083 2.6674 11 6 9.1368 -0.3320 3.3161 12 6 9.2276 -1.1205 4.6241 13 6 10.2780 -0.7517 2.3875 14 6 9.2461 1.1647 3.6142 15 7 7.6409 -1.4221 1.5455 16 7 6.3817 -1.4229 1.2768 17 6 4.1052 -1.4267 -0.0306 18 6 3.5708 -0.6953 -1.2659 19 6 2.0407 -0.7234 -1.2483 20 1 1.6583 -0.2248 -2.1389 21 7 1.5783 -2.1133 -1.2304 22 6 1.4480 -2.8067 -2.4040 23 1 1.6866 -2.3290 -3.3428 24 6 1.0093 -4.1236 -2.3871 25 7 0.7190 -4.7060 -1.2430 26 14 0.8323 -5.0697 -3.9880 27 1 2.1494 -5.1390 -4.6704 28 1 0.3516 -6.4448 -3.6998 29 1 -0.1445 -4.3775 -4.8668 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7214 1.2983 34 1 1.7637 -0.1597 2.1403 35 1 6.4427 0.5315 3.8643 36 1 9.1498 -2.1868 4.4117 37 1 10.1829 -0.9146 5.1070 38 1 8.4146 -0.8214 5.2858 39 1 10.2135 -0.1899 1.4556 40 1 11.2335 -0.5458 2.8699 41 1 10.2002 -1.8180 2.1751 42 1 8.4331 1.4637 4.2759 43 1 10.2017 1.3703 4.0965 44 1 9.1815 1.7265 2.6824 45 1 5.1895 -1.3247 0.0139 46 1 3.8374 -2.4819 -0.0864 47 1 3.9159 0.3385 -1.2542 48 1 3.9333 -1.1903 -2.1670 49 1 1.3642 -2.5425 -0.3873 50 1 0.4128 -5.6262 -1.2312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036045575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:42 Heat of formation + Delta-G solvation = 80.027462 kcal Electronic energy + Delta-G solvation = -30215.283265 eV Core-core repulsion = 26280.425628 eV Total energy + Delta-G solvation = -3934.857637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.91 seconds Orbital eigenvalues (eV) -42.36883 -39.69453 -37.77502 -37.42620 -34.19404 -32.82692 -32.08337 -31.29784 -30.77057 -29.04663 -28.06674 -27.98598 -26.36692 -25.02183 -23.93369 -23.41859 -22.52182 -21.50374 -20.72197 -19.50887 -18.23179 -17.24691 -17.16999 -16.35781 -16.18276 -15.76225 -14.99518 -14.88199 -14.66201 -14.49771 -14.25111 -14.11402 -13.85681 -13.46663 -13.18191 -13.11009 -12.98857 -12.86306 -12.75422 -12.46251 -12.38728 -12.28917 -12.15052 -11.91354 -11.65908 -11.43903 -11.34483 -11.14118 -10.91685 -10.79020 -10.65933 -10.48329 -10.37566 -10.14675 -10.05453 -9.72815 -9.56629 -9.43493 -9.28733 -8.80273 -8.07725 -6.87268 -5.70101 -2.97770 1.09877 1.78565 1.83350 3.31119 3.47156 3.48480 3.53349 3.53761 3.85425 4.11216 4.18358 4.23291 4.60806 4.65443 4.80889 4.87853 4.95448 5.03744 5.06543 5.10899 5.23387 5.26929 5.31580 5.43403 5.44378 5.51570 5.55531 5.58437 5.74220 5.76251 5.79057 5.95817 6.04596 6.10759 6.17648 6.27073 6.31189 6.37495 6.53817 6.60633 6.65508 6.78645 6.88964 6.91218 7.07542 7.15522 7.76491 7.77703 7.98951 8.43104 8.48704 9.59998 10.17797 10.52965 11.52497 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002975 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.969454 B = 9408.266116 C =10480.184930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.119 3.881 5 N -0.582 5.582 6 C 0.598 3.402 7 O -0.557 6.557 8 C -0.091 4.091 9 C 0.088 3.912 10 N -0.353 5.353 11 C 0.170 3.830 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.162 4.162 15 N -0.068 5.068 16 N -0.197 5.197 17 C 0.094 3.906 18 C -0.148 4.148 19 C 0.178 3.822 20 H 0.049 0.951 21 N -0.718 5.718 22 C -0.234 4.234 23 H 0.068 0.932 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.288 1.288 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.199 0.801 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.082 0.918 47 H 0.044 0.956 48 H 0.073 0.927 49 H 0.384 0.616 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.205 12.752 12.183 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.084 0.916 4 C -0.003 4.003 5 N -0.312 5.312 6 C 0.384 3.616 7 O -0.436 6.436 8 C -0.229 4.229 9 C -0.069 4.069 10 N -0.139 5.139 11 C 0.087 3.913 12 C -0.219 4.219 13 C -0.206 4.206 14 C -0.221 4.221 15 N -0.046 5.046 16 N -0.070 5.070 17 C -0.029 4.029 18 C -0.189 4.189 19 C 0.068 3.932 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.365 4.365 23 H 0.086 0.914 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.215 1.215 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.216 0.784 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.130 0.870 46 H 0.100 0.900 47 H 0.063 0.937 48 H 0.091 0.909 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.625 12.073 11.458 24.979 hybrid contribution -0.524 -0.188 0.043 0.559 sum 18.101 11.885 11.501 24.519 Atomic orbital electron populations 1.21667 0.94276 1.03170 1.00351 1.21690 0.96403 0.98840 0.95794 0.91646 1.21706 0.78264 1.01651 0.98700 1.47932 1.06906 1.58395 1.17954 1.16820 0.83308 0.78993 0.82502 1.90748 1.74045 1.42556 1.36214 1.21521 0.96453 1.06095 0.98873 1.23163 0.84347 0.99063 1.00300 1.50804 1.07222 1.33414 1.22476 1.21063 0.79924 0.96924 0.93379 1.22289 1.03750 1.01060 0.94850 1.21992 0.95754 1.03746 0.99151 1.22296 1.04078 0.92342 1.03354 1.82007 1.10321 1.12101 1.00210 1.74609 0.99293 1.13865 1.19229 1.22440 0.99697 0.98400 0.82357 1.22521 1.00025 0.98469 0.97928 1.20232 0.91061 0.87285 0.94656 0.93322 1.42452 1.78928 1.07745 1.06892 1.19173 1.36888 0.93903 0.86577 0.91366 1.24688 1.02476 0.97168 0.96528 1.69639 1.51860 1.13043 1.23644 0.86316 0.77713 0.79199 0.83230 1.21378 1.21880 1.21461 0.93812 0.92855 0.91030 0.90478 0.89752 0.78437 0.91142 0.89730 0.91368 0.91187 0.90246 0.90537 0.91150 0.89489 0.91123 0.86985 0.89995 0.93747 0.90860 0.78115 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.05 37.16 0.34 -1.95 16 2 C -0.11 -1.86 2.67 -90.50 -0.24 -2.10 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.12 2.14 5.43 -3.71 -0.02 2.12 16 5 N -0.58 -10.52 2.97 -174.00 -0.52 -11.04 16 6 C 0.60 10.48 7.67 -12.48 -0.10 10.39 16 7 O -0.56 -10.48 16.30 5.27 0.09 -10.39 16 8 C -0.09 -1.38 6.68 -83.55 -0.56 -1.94 16 9 C 0.09 1.01 10.44 -16.84 -0.18 0.83 16 10 N -0.35 -3.71 3.44 -48.36 -0.17 -3.88 16 11 C 0.17 1.10 1.25 -131.82 -0.16 0.94 16 12 C -0.16 -0.84 8.73 37.16 0.32 -0.52 16 13 C -0.15 -0.90 8.11 37.16 0.30 -0.60 16 14 C -0.16 -0.72 8.30 37.16 0.31 -0.42 16 15 N -0.07 -0.95 12.91 60.35 0.78 -0.17 16 16 N -0.20 -3.17 8.81 32.85 0.29 -2.88 16 17 C 0.09 1.75 5.82 -3.72 -0.02 1.73 16 18 C -0.15 -2.74 5.78 -26.61 -0.15 -2.90 16 19 C 0.18 3.53 2.53 -67.89 -0.17 3.36 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 21 N -0.72 -17.27 3.64 -53.38 -0.19 -17.47 16 22 C -0.23 -6.33 9.93 -15.06 -0.15 -6.48 16 23 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 26 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 33 H 0.08 1.52 6.64 -51.93 -0.34 1.18 16 34 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 35 H 0.20 1.67 7.63 -52.48 -0.40 1.27 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 42 H 0.07 0.28 7.44 -51.93 -0.39 -0.10 16 43 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.11 2.01 4.15 -74.92 -0.31 1.70 16 46 H 0.08 1.78 7.74 -51.93 -0.40 1.38 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 49 H 0.38 9.87 5.92 -40.82 -0.24 9.62 16 50 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -32.51 393.94 -6.96 -39.47 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.30 Total: 8.17 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.58 Total: 2.00 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.92 Total: -62.61 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.51 -6.96 -39.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036045575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.498 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.91 seconds