Wall clock time and date at job start Wed Apr 1 2020 00:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.49797 * 2 1 4 4 C 1.53186 * 109.49819 * 120.06962 * 2 1 3 5 5 N 1.46929 * 108.77416 * 174.58218 * 4 2 1 6 6 C 1.34775 * 120.62776 * 126.37123 * 5 4 2 7 7 O 1.21603 * 120.00497 * 352.70989 * 6 5 4 8 8 C 1.47524 * 120.00222 * 172.70835 * 6 5 4 9 9 C 1.36591 * 125.77595 * 172.62830 * 8 6 5 10 10 N 1.34816 * 106.84209 * 179.97438 * 9 8 6 11 11 C 1.46496 * 126.59240 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47308 * 74.99736 * 11 10 9 13 13 C 1.53001 * 109.46924 * 194.99405 * 11 10 9 14 14 C 1.53004 * 109.47370 * 314.99298 * 11 10 9 15 15 N 1.40212 * 106.80930 * 359.97438 * 10 9 8 16 16 N 1.28760 * 108.36622 * 359.75330 * 15 10 9 17 17 C 1.46918 * 118.74094 * 306.39295 * 5 4 2 18 18 C 1.53186 * 108.77723 * 53.60801 * 17 5 4 19 19 C 1.53044 * 109.49173 * 239.90747 * 2 1 3 20 20 H 1.08995 * 109.46222 * 58.67960 * 19 2 1 21 21 N 1.46494 * 109.46011 * 298.69908 * 19 2 1 22 22 C 1.36939 * 119.99894 * 155.00125 * 21 19 2 23 23 H 1.08005 * 119.99725 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00216 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00164 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47389 * 59.99702 * 26 24 22 28 28 H 1.48499 * 109.47394 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47424 * 299.99854 * 26 24 22 30 30 H 1.09008 * 109.46690 * 299.93650 * 1 2 3 31 31 H 1.08997 * 109.47430 * 59.92637 * 1 2 3 32 32 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.58659 * 54.79790 * 4 2 1 34 34 H 1.09003 * 109.70555 * 294.44441 * 4 2 1 35 35 H 1.08004 * 126.57568 * 359.95419 * 9 8 6 36 36 H 1.08997 * 109.47247 * 59.99725 * 12 11 10 37 37 H 1.09007 * 109.47227 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.46977 * 299.99236 * 12 11 10 39 39 H 1.09006 * 109.47047 * 60.00336 * 13 11 10 40 40 H 1.08999 * 109.47318 * 179.97438 * 13 11 10 41 41 H 1.08997 * 109.47204 * 300.00014 * 13 11 10 42 42 H 1.09001 * 109.46668 * 60.00250 * 14 11 10 43 43 H 1.08991 * 109.47341 * 180.02562 * 14 11 10 44 44 H 1.09002 * 109.47104 * 300.00564 * 14 11 10 45 45 H 1.08999 * 109.58777 * 173.39725 * 17 5 4 46 46 H 1.09005 * 109.58590 * 293.82304 * 17 5 4 47 47 H 1.08997 * 109.49778 * 65.31446 * 18 17 5 48 48 H 1.09007 * 109.50087 * 185.41871 * 18 17 5 49 49 H 0.96996 * 120.00844 * 335.00945 * 21 19 2 50 50 H 0.96995 * 120.00036 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2497 5 7 3.5046 -0.8289 1.1696 6 6 4.2812 -0.3852 2.1778 7 8 3.7845 0.2262 3.1042 8 6 5.7339 -0.6413 2.1577 9 6 6.6472 -0.1298 3.0352 10 7 7.8527 -0.6083 2.6674 11 6 9.1368 -0.3320 3.3161 12 6 9.2276 -1.1205 4.6241 13 6 10.2780 -0.7517 2.3875 14 6 9.2461 1.1647 3.6142 15 7 7.6409 -1.4221 1.5455 16 7 6.3817 -1.4229 1.2768 17 6 4.1052 -1.4267 -0.0306 18 6 3.5708 -0.6953 -1.2659 19 6 2.0407 -0.7234 -1.2483 20 1 1.6583 -0.2248 -2.1389 21 7 1.5783 -2.1133 -1.2304 22 6 1.4480 -2.8067 -2.4040 23 1 1.6866 -2.3290 -3.3428 24 6 1.0093 -4.1236 -2.3871 25 7 0.7190 -4.7060 -1.2430 26 14 0.8323 -5.0697 -3.9880 27 1 2.1494 -5.1390 -4.6704 28 1 0.3516 -6.4448 -3.6998 29 1 -0.1445 -4.3775 -4.8668 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7214 1.2983 34 1 1.7637 -0.1597 2.1403 35 1 6.4427 0.5315 3.8643 36 1 9.1498 -2.1868 4.4117 37 1 10.1829 -0.9146 5.1070 38 1 8.4146 -0.8214 5.2858 39 1 10.2135 -0.1899 1.4556 40 1 11.2335 -0.5458 2.8699 41 1 10.2002 -1.8180 2.1751 42 1 8.4331 1.4637 4.2759 43 1 10.2017 1.3703 4.0965 44 1 9.1815 1.7265 2.6824 45 1 5.1895 -1.3247 0.0139 46 1 3.8374 -2.4819 -0.0864 47 1 3.9159 0.3385 -1.2542 48 1 3.9333 -1.1903 -2.1670 49 1 1.3642 -2.5425 -0.3873 50 1 0.4128 -5.6262 -1.2312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036045575.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:40 Heat of formation + Delta-G solvation = 59.590702 kcal Electronic energy + Delta-G solvation = -30216.169469 eV Core-core repulsion = 26280.425628 eV Total energy + Delta-G solvation = -3935.743842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.38256 -41.10722 -39.05417 -38.30462 -35.86704 -34.50307 -33.04261 -32.97001 -31.85052 -30.90331 -28.52435 -28.41040 -27.70285 -26.64097 -25.36057 -24.82193 -23.74935 -23.00875 -21.66124 -20.69655 -19.66681 -19.24905 -18.11567 -17.57377 -17.17505 -17.01821 -16.61150 -16.02731 -15.93185 -15.80883 -15.46315 -15.16150 -14.98907 -14.87203 -14.80501 -14.33146 -14.19871 -13.72404 -13.61647 -13.40246 -13.29011 -13.17589 -12.98903 -12.95389 -12.81795 -12.76881 -12.66648 -12.46607 -12.44337 -12.25586 -12.15295 -12.00387 -11.92006 -11.58531 -11.52361 -11.26412 -11.15747 -11.03430 -10.68625 -10.37241 -9.57039 -8.89800 -7.86709 -5.12777 0.15507 0.58200 1.05045 1.49205 1.51474 1.56949 1.97037 2.17925 2.61120 3.10687 3.24294 3.46671 3.59962 3.66031 3.77785 3.86688 3.91079 3.92554 4.12929 4.15028 4.19323 4.26100 4.44803 4.50225 4.58368 4.60516 4.61725 4.66878 4.68735 4.73889 4.79416 4.80411 4.82374 4.91458 5.06745 5.08395 5.13521 5.16178 5.20405 5.26098 5.27927 5.31772 5.41260 5.50914 5.56714 5.61162 5.69186 6.35021 6.38170 6.84452 7.10018 7.42131 8.18922 8.42832 9.36627 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015718 B = 0.002975 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.969454 B = 9408.266116 C =10480.184930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.124 3.876 5 N -0.588 5.588 6 C 0.599 3.401 7 O -0.571 6.571 8 C -0.121 4.121 9 C 0.111 3.889 10 N -0.336 5.336 11 C 0.158 3.842 12 C -0.159 4.159 13 C -0.148 4.148 14 C -0.159 4.159 15 N -0.086 5.086 16 N -0.229 5.229 17 C 0.107 3.893 18 C -0.140 4.140 19 C 0.173 3.827 20 H 0.048 0.952 21 N -0.724 5.724 22 C -0.227 4.227 23 H 0.074 0.926 24 C -0.075 4.075 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.282 1.282 28 H -0.301 1.301 29 H -0.280 1.280 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.233 0.767 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.061 0.939 45 H 0.124 0.876 46 H 0.042 0.958 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.373 0.627 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.216 15.243 13.229 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.317 5.317 6 C 0.387 3.613 7 O -0.451 6.451 8 C -0.261 4.261 9 C -0.047 4.047 10 N -0.122 5.122 11 C 0.077 3.923 12 C -0.217 4.217 13 C -0.206 4.206 14 C -0.217 4.217 15 N -0.065 5.065 16 N -0.101 5.101 17 C -0.017 4.017 18 C -0.181 4.181 19 C 0.064 3.936 20 H 0.066 0.934 21 N -0.365 5.365 22 C -0.359 4.359 23 H 0.092 0.908 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.796 3.204 27 H -0.208 1.208 28 H -0.227 1.227 29 H -0.206 1.206 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.249 0.751 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.130 0.870 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.141 0.859 46 H 0.060 0.940 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.207 0.793 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.686 14.605 12.483 28.232 hybrid contribution -0.992 -0.868 -0.170 1.329 sum 19.694 13.737 12.313 26.985 Atomic orbital electron populations 1.21595 0.93667 1.01547 1.01971 1.21617 0.96823 0.99275 0.93970 0.89453 1.21605 0.78473 1.00397 0.99412 1.47929 1.06928 1.58763 1.18121 1.17073 0.84221 0.78274 0.81744 1.90723 1.74690 1.43264 1.36390 1.21422 0.95821 1.08088 1.00753 1.23585 0.83660 0.97842 0.99627 1.51211 1.08461 1.31444 1.21090 1.21628 0.78002 0.98958 0.93690 1.22321 1.05673 0.99593 0.94079 1.22027 0.97196 1.02327 0.99014 1.22341 1.06099 0.89924 1.03360 1.81919 1.09412 1.13307 1.01846 1.74494 1.00187 1.14896 1.20526 1.22216 1.00436 0.96108 0.82890 1.22405 0.98769 0.99697 0.97249 1.20445 0.91850 0.85280 0.96023 0.93354 1.42564 1.78976 1.09310 1.05602 1.19539 1.34682 0.94032 0.87667 0.90818 1.25412 1.03654 0.98379 0.99272 1.69805 1.53890 1.12849 1.25567 0.85326 0.77772 0.77408 0.79939 1.20804 1.22743 1.20585 0.91288 0.92132 0.94189 0.93094 0.88871 0.75102 0.92998 0.86654 0.90977 0.92356 0.87027 0.92360 0.90263 0.86617 0.92035 0.85888 0.93987 0.91264 0.92100 0.79332 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.05 71.98 0.65 -3.59 16 2 C -0.10 -3.29 2.67 -10.72 -0.03 -3.32 16 3 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.12 4.47 5.43 86.36 0.47 4.94 16 5 N -0.59 -21.43 2.97 -822.68 -2.44 -23.87 16 6 C 0.60 20.76 7.67 86.69 0.67 21.43 16 7 O -0.57 -20.84 16.30 -4.04 -0.07 -20.90 16 8 C -0.12 -3.64 6.68 40.81 0.27 -3.37 16 9 C 0.11 2.33 10.44 83.85 0.88 3.20 16 10 N -0.34 -6.54 3.44 -306.91 -1.06 -7.59 16 11 C 0.16 1.64 1.25 3.60 0.00 1.64 16 12 C -0.16 -1.19 8.73 71.98 0.63 -0.57 16 13 C -0.15 -1.50 8.11 71.98 0.58 -0.91 16 14 C -0.16 -0.82 8.30 71.98 0.60 -0.22 16 15 N -0.09 -2.41 12.91 37.02 0.48 -1.93 16 16 N -0.23 -7.44 8.81 -49.99 -0.44 -7.88 16 17 C 0.11 4.09 5.82 86.36 0.50 4.59 16 18 C -0.14 -5.18 5.78 30.67 0.18 -5.00 16 19 C 0.17 6.85 2.53 45.02 0.11 6.96 16 20 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 21 N -0.72 -35.80 3.64 -322.81 -1.17 -36.97 16 22 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 23 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 24 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 25 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 26 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 29 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.55 7.53 -2.39 -0.02 1.54 16 33 H 0.05 2.11 6.64 -2.38 -0.02 2.09 16 34 H 0.09 3.20 7.00 -2.39 -0.02 3.19 16 35 H 0.23 3.11 7.63 -2.91 -0.02 3.09 16 36 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 38 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.06 0.81 8.06 -2.39 -0.02 0.79 16 42 H 0.08 0.30 7.44 -2.39 -0.02 0.29 16 43 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.12 4.54 4.15 -32.13 -0.13 4.40 16 46 H 0.04 1.93 7.74 -2.38 -0.02 1.92 16 47 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 49 H 0.37 20.09 5.92 -92.71 -0.55 19.54 16 50 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -72.96 393.94 4.69 -68.28 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.26 Total: 31.31 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.81 Total: 10.26 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -4.36 Total: -138.04 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.07 Total: -20.90 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -72.96 4.69 -68.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036045575.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.869 kcal (2) G-P(sol) polarization free energy of solvation -72.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds