Wall clock time and date at job start Wed Apr 1 2020 00:48:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.52750 * 2 1
4 4 C 1.53190 * 109.49987 * 120.08917 * 2 1 3
5 5 N 1.46918 * 108.77676 * 174.58512 * 4 2 1
6 6 C 1.34777 * 120.63215 * 126.36899 * 5 4 2
7 7 O 1.21595 * 120.00326 * 352.69948 * 6 5 4
8 8 C 1.47526 * 120.00259 * 172.70622 * 6 5 4
9 9 C 1.36600 * 125.77300 * 172.62396 * 8 6 5
10 10 N 1.34813 * 106.83985 * 179.97438 * 9 8 6
11 11 C 1.46502 * 126.59127 * 179.97438 * 10 9 8
12 12 C 1.53002 * 109.47053 * 75.00278 * 11 10 9
13 13 C 1.53006 * 109.46575 * 195.00203 * 11 10 9
14 14 C 1.52992 * 109.47279 * 314.99919 * 11 10 9
15 15 N 1.40209 * 106.81147 * 359.97438 * 10 9 8
16 16 N 1.28760 * 108.36560 * 359.74918 * 15 10 9
17 17 C 1.46931 * 118.74091 * 306.38995 * 5 4 2
18 18 C 1.53186 * 108.77266 * 53.60835 * 17 5 4
19 19 C 1.53042 * 109.31571 * 305.36546 * 18 17 5
20 20 H 1.09006 * 109.45641 * 301.35002 * 19 18 17
21 21 N 1.46494 * 109.46478 * 181.38961 * 19 18 17
22 22 C 1.36930 * 120.00127 * 84.99908 * 21 19 18
23 23 H 1.08005 * 120.00241 * 359.97438 * 22 21 19
24 24 C 1.38817 * 120.00192 * 180.02562 * 22 21 19
25 25 N 1.31618 * 120.00000 * 179.97438 * 24 22 21
26 26 Si 1.86796 * 119.99795 * 0.02562 * 24 22 21
27 27 H 1.48496 * 109.47581 * 89.99791 * 26 24 22
28 28 H 1.48501 * 109.47084 * 210.00180 * 26 24 22
29 29 H 1.48504 * 109.47228 * 329.99890 * 26 24 22
30 30 H 1.09004 * 109.46727 * 180.02562 * 1 2 3
31 31 H 1.08995 * 109.46579 * 300.07426 * 1 2 3
32 32 H 1.08992 * 109.46932 * 60.07360 * 1 2 3
33 33 H 1.09007 * 109.58574 * 294.37000 * 4 2 1
34 34 H 1.09006 * 109.58883 * 54.65425 * 4 2 1
35 35 H 1.08002 * 126.57663 * 359.95596 * 9 8 6
36 36 H 1.08999 * 109.46962 * 60.00229 * 12 11 10
37 37 H 1.09004 * 109.46511 * 179.97438 * 12 11 10
38 38 H 1.08998 * 109.46873 * 299.99690 * 12 11 10
39 39 H 1.08998 * 109.47445 * 60.00198 * 13 11 10
40 40 H 1.09003 * 109.46824 * 180.02562 * 13 11 10
41 41 H 1.08998 * 109.46875 * 299.99596 * 13 11 10
42 42 H 1.08998 * 109.47128 * 60.00016 * 14 11 10
43 43 H 1.08995 * 109.47445 * 180.02562 * 14 11 10
44 44 H 1.09007 * 109.47144 * 300.00279 * 14 11 10
45 45 H 1.09001 * 109.58594 * 293.82124 * 17 5 4
46 46 H 1.09001 * 109.58532 * 173.39860 * 17 5 4
47 47 H 1.08999 * 109.50245 * 65.32209 * 18 17 5
48 48 H 1.09000 * 109.49467 * 185.41589 * 18 17 5
49 49 H 0.97003 * 119.99660 * 265.00149 * 21 19 18
50 50 H 0.97008 * 119.99634 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8944 1.0273 0.0000
4 6 2.0414 -0.7240 1.2494
5 7 3.5046 -0.8293 1.1694
6 6 4.2812 -0.3859 2.1777
7 8 3.7846 0.2254 3.1041
8 6 5.7339 -0.6420 2.1575
9 6 6.6472 -0.1306 3.0352
10 7 7.8527 -0.6090 2.6673
11 6 9.1371 -0.3321 3.3155
12 6 9.2284 -1.1200 4.6238
13 6 10.2780 -0.7519 2.3865
14 6 9.2460 1.1647 3.6128
15 7 7.6410 -1.4226 1.5452
16 7 6.3817 -1.4234 1.2766
17 6 4.1053 -1.4267 -0.0311
18 6 3.5709 -0.6949 -1.2661
19 6 2.0408 -0.7230 -1.2485
20 1 1.6967 -1.7572 -1.2355
21 7 1.5264 -0.0528 -2.4453
22 6 1.3950 -0.7493 -3.6169
23 1 1.6709 -1.7927 -3.6588
24 6 0.9081 -0.1141 -4.7511
25 7 0.7822 -0.7835 -5.8774
26 14 0.4329 1.6910 -4.6793
27 1 1.6118 2.5272 -5.0200
28 1 -0.6585 1.9546 -5.6512
29 1 -0.0325 2.0262 -3.3095
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3632 0.5150 0.8893
32 1 -0.3633 0.5127 -0.8906
33 1 1.7639 -0.1581 2.1389
34 1 1.6033 -1.7209 1.2991
35 1 6.4428 0.5304 3.8644
36 1 9.1509 -2.1863 4.4119
37 1 10.1842 -0.9142 5.1058
38 1 8.4155 -0.8208 5.2855
39 1 10.2130 -0.1906 1.4544
40 1 11.2336 -0.5463 2.8689
41 1 10.2004 -1.8183 2.1747
42 1 8.4331 1.4638 4.2745
43 1 10.2017 1.3709 4.0946
44 1 9.1809 1.7260 2.6806
45 1 3.8376 -2.4819 -0.0871
46 1 5.1896 -1.3247 0.0135
47 1 3.9159 0.3389 -1.2542
48 1 3.9334 -1.1895 -2.1673
49 1 1.2790 0.8844 -2.4078
50 1 0.4416 -0.3396 -6.6699
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036045579.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:48:00
Heat of formation + Delta-G solvation = 80.833713 kcal
Electronic energy + Delta-G solvation = -29815.395238 eV
Core-core repulsion = 25880.572563 eV
Total energy + Delta-G solvation = -3934.822676 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.52247 -39.86254 -37.86661 -37.55687 -34.69174 -32.95271 -32.22065 -31.49371
-30.93689 -29.72981 -28.14861 -28.07565 -26.60150 -25.21523 -24.06718 -23.17019
-22.12096 -21.45257 -20.83548 -19.94574 -19.11825 -17.54489 -17.29858 -16.55671
-16.33515 -15.98256 -15.11752 -15.00620 -14.82525 -14.75265 -14.31273 -14.27595
-13.83850 -13.67384 -13.25848 -13.19324 -13.09423 -12.97050 -12.84332 -12.54041
-12.43799 -12.41014 -12.28912 -12.07150 -11.98737 -11.68120 -11.58054 -11.38501
-11.08692 -10.93594 -10.75322 -10.64294 -10.50101 -10.27979 -10.18306 -9.84130
-9.68009 -9.52414 -9.45205 -8.84248 -8.41573 -7.20421 -5.72826 -3.07374
0.95721 1.60261 1.70099 3.05599 3.27694 3.40249 3.43777 3.48301
3.74830 4.01699 4.02966 4.14090 4.42657 4.62894 4.68226 4.79944
4.83021 4.92862 4.98052 5.00991 5.13046 5.14023 5.15648 5.17688
5.34821 5.35287 5.38281 5.48624 5.50239 5.62536 5.68335 5.69561
5.80973 5.83744 6.02458 6.04940 6.17176 6.25136 6.32772 6.36117
6.45319 6.54332 6.66666 6.76729 6.91841 7.06431 7.50177 7.80343
8.04083 8.20433 8.46555 9.25279 9.98138 10.18671 11.45675
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.018032 B = 0.002660 C = 0.002488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1552.401113 B =10524.610743 C =11249.483849
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.113 4.113
3 H 0.068 0.932
4 C 0.121 3.879
5 N -0.589 5.589
6 C 0.602 3.398
7 O -0.551 6.551
8 C -0.094 4.094
9 C 0.091 3.909
10 N -0.351 5.351
11 C 0.169 3.831
12 C -0.161 4.161
13 C -0.149 4.149
14 C -0.163 4.163
15 N -0.065 5.065
16 N -0.201 5.201
17 C 0.086 3.914
18 C -0.149 4.149
19 C 0.187 3.813
20 H 0.057 0.943
21 N -0.746 5.746
22 C -0.238 4.238
23 H 0.090 0.910
24 C 0.003 3.997
25 N -0.935 5.935
26 Si 0.882 3.118
27 H -0.286 1.286
28 H -0.292 1.292
29 H -0.277 1.277
30 H 0.055 0.945
31 H 0.045 0.955
32 H 0.067 0.933
33 H 0.089 0.911
34 H 0.070 0.930
35 H 0.200 0.800
36 H 0.069 0.931
37 H 0.085 0.915
38 H 0.067 0.933
39 H 0.070 0.930
40 H 0.080 0.920
41 H 0.075 0.925
42 H 0.070 0.930
43 H 0.087 0.913
44 H 0.071 0.929
45 H 0.066 0.934
46 H 0.121 0.879
47 H 0.055 0.945
48 H 0.080 0.920
49 H 0.360 0.640
50 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.470 1.575 24.311 30.572
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.133 4.133
3 H 0.087 0.913
4 C -0.002 4.002
5 N -0.320 5.320
6 C 0.388 3.612
7 O -0.429 6.429
8 C -0.233 4.233
9 C -0.066 4.066
10 N -0.137 5.137
11 C 0.087 3.913
12 C -0.219 4.219
13 C -0.207 4.207
14 C -0.222 4.222
15 N -0.044 5.044
16 N -0.074 5.074
17 C -0.037 4.037
18 C -0.190 4.190
19 C 0.078 3.922
20 H 0.075 0.925
21 N -0.388 5.388
22 C -0.368 4.368
23 H 0.108 0.892
24 C -0.192 4.192
25 N -0.583 5.583
26 Si 0.713 3.287
27 H -0.213 1.213
28 H -0.219 1.219
29 H -0.203 1.203
30 H 0.074 0.926
31 H 0.064 0.936
32 H 0.086 0.914
33 H 0.108 0.892
34 H 0.088 0.912
35 H 0.216 0.784
36 H 0.088 0.912
37 H 0.104 0.896
38 H 0.086 0.914
39 H 0.089 0.911
40 H 0.098 0.902
41 H 0.094 0.906
42 H 0.089 0.911
43 H 0.106 0.894
44 H 0.090 0.910
45 H 0.085 0.915
46 H 0.138 0.862
47 H 0.073 0.927
48 H 0.099 0.901
49 H 0.193 0.807
50 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 18.896 0.800 23.566 30.217
hybrid contribution -0.713 1.966 0.498 2.150
sum 18.182 2.766 24.064 30.287
Atomic orbital electron populations
1.21672 0.94173 1.02112 1.01538 1.21779 0.96485 1.00052 0.94987
0.91335 1.21731 0.78208 1.01013 0.99209 1.47951 1.06884 1.59182
1.17951 1.16816 0.83344 0.78721 0.82341 1.90765 1.74021 1.41969
1.36145 1.21466 0.96342 1.06467 0.98991 1.23191 0.84327 0.98813
1.00271 1.50817 1.07307 1.33271 1.22308 1.21098 0.79807 0.97020
0.93395 1.22288 1.03834 1.00978 0.94802 1.22001 0.95778 1.03712
0.99208 1.22305 1.04157 0.92252 1.03451 1.82004 1.10107 1.12091
1.00150 1.74530 0.99456 1.14250 1.19180 1.22595 1.01070 0.96893
0.83161 1.22619 0.99362 1.00311 0.96738 1.20211 0.90813 0.95948
0.85246 0.92521 1.42777 1.78161 1.10137 1.07693 1.19072 1.35946
0.95802 0.85956 0.89176 1.24653 1.01555 0.97356 0.95650 1.69702
1.52388 1.35613 1.00612 0.86582 0.78140 0.86988 0.76995 1.21264
1.21871 1.20308 0.92563 0.93594 0.91424 0.89238 0.91162 0.78357
0.91174 0.89640 0.91370 0.91099 0.90154 0.90551 0.91141 0.89392
0.91039 0.91524 0.86214 0.92669 0.90132 0.80710 0.93159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.15 9.03 37.16 0.34 -1.82 16
2 C -0.11 -1.85 2.46 -90.50 -0.22 -2.07 16
3 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16
4 C 0.12 1.78 5.73 -3.72 -0.02 1.76 16
5 N -0.59 -8.99 2.97 -174.00 -0.52 -9.50 16
6 C 0.60 9.21 7.67 -12.47 -0.10 9.11 16
7 O -0.55 -9.30 16.30 5.28 0.09 -9.21 16
8 C -0.09 -1.25 6.68 -83.55 -0.56 -1.81 16
9 C 0.09 0.91 10.44 -16.83 -0.18 0.73 16
10 N -0.35 -3.22 3.44 -48.35 -0.17 -3.39 16
11 C 0.17 0.93 1.25 -131.82 -0.16 0.76 16
12 C -0.16 -0.65 8.74 37.16 0.32 -0.32 16
13 C -0.15 -0.77 8.11 37.16 0.30 -0.47 16
14 C -0.16 -0.62 8.30 37.15 0.31 -0.31 16
15 N -0.06 -0.80 12.91 60.35 0.78 -0.02 16
16 N -0.20 -2.81 8.81 32.85 0.29 -2.52 16
17 C 0.09 1.32 6.07 -3.71 -0.02 1.30 16
18 C -0.15 -2.67 5.66 -26.61 -0.15 -2.82 16
19 C 0.19 3.59 2.19 -67.89 -0.15 3.45 16
20 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16
21 N -0.75 -17.46 4.21 -53.38 -0.22 -17.68 16
22 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16
23 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16
24 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16
25 N -0.94 -29.45 13.97 55.49 0.78 -28.68 16
26 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16
27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
29 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16
30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16
32 H 0.07 1.21 7.36 -51.93 -0.38 0.83 16
33 H 0.09 1.31 7.00 -51.92 -0.36 0.95 16
34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
35 H 0.20 1.42 7.63 -52.49 -0.40 1.02 16
36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
37 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16
38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16
41 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16
42 H 0.07 0.23 7.44 -51.93 -0.39 -0.15 16
43 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16
44 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16
45 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
46 H 0.12 1.84 4.15 -74.87 -0.31 1.53 16
47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
48 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16
49 H 0.36 8.43 5.37 -40.82 -0.22 8.21 16
50 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16
LS Contribution 394.77 15.07 5.95 5.95
Total: -1.00 -34.12 394.77 -6.70 -40.82
By element:
Atomic # 1 Polarization: 14.32 SS G_CDS: -8.41 Total: 5.91 kcal
Atomic # 6 Polarization: 1.25 SS G_CDS: -0.54 Total: 0.70 kcal
Atomic # 7 Polarization: -62.73 SS G_CDS: 0.94 Total: -61.79 kcal
Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -34.12 -6.70 -40.82 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036045579.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.655 kcal
(2) G-P(sol) polarization free energy of solvation -34.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.531 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal
(6) G-S(sol) free energy of system = (1) + (5) 80.834 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds