Wall clock time and date at job start Wed Apr 1 2020 00:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.52485 * 2 1 4 4 C 1.53188 * 109.49666 * 239.91535 * 2 1 3 5 5 N 1.46932 * 108.89141 * 185.48463 * 4 2 1 6 6 C 1.34781 * 120.62946 * 233.51766 * 5 4 2 7 7 O 1.21590 * 119.99961 * 353.71029 * 6 5 4 8 8 C 1.47522 * 119.99542 * 173.71567 * 6 5 4 9 9 C 1.36594 * 125.76704 * 173.19230 * 8 6 5 10 10 N 1.34816 * 106.84183 * 179.89443 * 9 8 6 11 11 C 1.46497 * 126.59858 * 180.13234 * 10 9 8 12 12 C 1.53000 * 109.47333 * 75.24383 * 11 10 9 13 13 C 1.52996 * 109.47210 * 195.24817 * 11 10 9 14 14 C 1.52998 * 109.46936 * 315.24502 * 11 10 9 15 15 N 1.40210 * 106.80573 * 0.35688 * 10 9 8 16 16 N 1.28764 * 108.36854 * 359.77121 * 15 10 9 17 17 C 1.46926 * 118.73732 * 53.53882 * 5 4 2 18 18 C 1.53190 * 108.77474 * 306.38979 * 17 5 4 19 19 C 1.53037 * 109.31217 * 54.64141 * 18 17 5 20 20 H 1.08994 * 109.46867 * 58.64879 * 19 18 17 21 21 N 1.46500 * 109.45809 * 178.63028 * 19 18 17 22 22 C 1.36941 * 119.99576 * 274.98939 * 21 19 18 23 23 H 1.07996 * 120.00217 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99882 * 180.02562 * 22 21 19 25 25 N 1.31614 * 120.00060 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99801 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47098 * 60.00316 * 26 24 22 28 28 H 1.48500 * 109.47007 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47248 * 300.00160 * 26 24 22 30 30 H 1.08995 * 109.46769 * 180.08304 * 1 2 3 31 31 H 1.09001 * 109.47239 * 300.08140 * 1 2 3 32 32 H 1.08999 * 109.47122 * 60.08086 * 1 2 3 33 33 H 1.09003 * 109.58709 * 65.63274 * 4 2 1 34 34 H 1.08991 * 109.59024 * 305.34451 * 4 2 1 35 35 H 1.08005 * 126.57905 * 0.03676 * 9 8 6 36 36 H 1.08999 * 109.46837 * 59.99769 * 12 11 10 37 37 H 1.08995 * 109.47039 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.46762 * 300.00147 * 12 11 10 39 39 H 1.09001 * 109.47484 * 59.99445 * 13 11 10 40 40 H 1.09000 * 109.47093 * 180.02562 * 13 11 10 41 41 H 1.09004 * 109.46677 * 299.99587 * 13 11 10 42 42 H 1.09005 * 109.47373 * 59.99723 * 14 11 10 43 43 H 1.08995 * 109.47350 * 180.02562 * 14 11 10 44 44 H 1.08997 * 109.47280 * 300.00182 * 14 11 10 45 45 H 1.09002 * 109.58749 * 66.17792 * 17 5 4 46 46 H 1.09003 * 109.58317 * 186.60513 * 17 5 4 47 47 H 1.09008 * 109.49604 * 174.58509 * 18 17 5 48 48 H 1.08997 * 109.50065 * 294.68331 * 18 17 5 49 49 H 0.96991 * 120.00686 * 94.99607 * 21 19 18 50 50 H 0.97005 * 120.00063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5045 -0.8321 -1.1713 6 6 4.2806 -0.3916 -2.1814 7 8 3.7712 -0.0050 -3.2154 8 6 5.7483 -0.3788 -2.0322 9 6 6.6482 -0.0840 -3.0166 10 7 7.8751 -0.1842 -2.4668 11 6 9.1556 0.0452 -3.1407 12 6 9.3718 1.5483 -3.3270 13 6 10.2896 -0.5318 -2.2911 14 6 9.1425 -0.6415 -4.5079 15 7 7.6902 -0.5552 -1.1274 16 7 6.4260 -0.6607 -0.9065 17 6 4.1055 -1.4301 0.0287 18 6 3.5742 -0.6965 1.2641 19 6 2.0441 -0.7215 1.2484 20 1 1.6978 -1.7549 1.2365 21 7 1.5327 -0.0491 2.4454 22 6 1.4013 -0.7445 3.6178 23 1 1.6750 -1.7883 3.6601 24 6 0.9163 -0.1076 4.7518 25 7 0.5823 1.1644 4.7001 26 14 0.7378 -1.0559 6.3513 27 1 2.0650 -1.5737 6.7706 28 1 0.2035 -0.1550 7.4039 29 1 -0.1964 -2.1927 6.1511 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1580 -2.1389 34 1 1.6033 -1.7207 -1.2993 35 1 6.4205 0.1810 -4.0385 36 1 9.3810 2.0375 -2.3530 37 1 10.3242 1.7189 -3.8288 38 1 8.5638 1.9593 -3.9324 39 1 10.1355 -1.6027 -2.1583 40 1 11.2423 -0.3607 -2.7923 41 1 10.2989 -0.0426 -1.3170 42 1 8.3345 -0.2305 -5.1132 43 1 10.0953 -0.4713 -5.0091 44 1 8.9884 -1.7123 -4.3752 45 1 3.8357 -2.4847 0.0857 46 1 5.1900 -1.3302 -0.0173 47 1 3.9369 -1.1913 2.1651 48 1 3.9213 0.3367 1.2510 49 1 1.2872 0.8884 2.4075 50 1 0.2430 1.6094 5.4925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036045581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:04 Heat of formation + Delta-G solvation = 79.211571 kcal Electronic energy + Delta-G solvation = -29799.567207 eV Core-core repulsion = 25864.674190 eV Total energy + Delta-G solvation = -3934.893017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.49491 -39.77408 -37.80879 -37.46016 -34.53438 -32.89298 -32.18186 -31.37185 -30.87764 -29.17993 -28.12788 -28.04302 -26.48721 -25.03984 -24.04980 -23.30109 -22.15221 -21.50215 -20.80699 -19.80125 -18.94387 -17.36479 -16.98655 -16.54338 -16.26266 -15.92662 -15.06136 -14.91935 -14.85959 -14.72916 -14.27034 -14.04583 -13.76517 -13.62132 -13.30967 -13.14726 -13.10054 -12.88778 -12.83753 -12.45524 -12.37208 -12.35579 -12.16598 -11.97161 -11.92048 -11.54941 -11.48801 -11.09566 -10.92917 -10.81065 -10.66848 -10.55687 -10.37819 -10.19111 -10.15046 -9.80631 -9.56939 -9.50093 -9.41516 -8.77606 -8.32942 -6.86550 -5.69769 -2.97512 0.99284 1.63795 1.72863 3.13298 3.33013 3.48416 3.52893 3.53628 3.77571 4.04212 4.06199 4.16508 4.47351 4.64848 4.71504 4.81959 4.86386 4.95438 5.00737 5.03132 5.17338 5.18798 5.22529 5.35100 5.37452 5.45265 5.50294 5.52742 5.60736 5.68673 5.72397 5.82056 5.91177 5.99558 6.17531 6.18016 6.21949 6.40467 6.49580 6.55588 6.58994 6.69640 6.83678 6.94611 7.05414 7.21900 7.57427 7.76207 7.86367 8.26715 8.48915 9.59990 10.18761 10.53835 11.52942 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.002651 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.464674 B =10559.198958 C =11658.539723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.587 5.587 6 C 0.601 3.399 7 O -0.552 6.552 8 C -0.092 4.092 9 C 0.090 3.910 10 N -0.351 5.351 11 C 0.169 3.831 12 C -0.162 4.162 13 C -0.149 4.149 14 C -0.163 4.163 15 N -0.064 5.064 16 N -0.200 5.200 17 C 0.070 3.930 18 C -0.143 4.143 19 C 0.182 3.818 20 H 0.046 0.954 21 N -0.721 5.721 22 C -0.234 4.234 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.200 0.800 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.134 0.866 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.898 -2.719 -21.610 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.317 5.317 6 C 0.387 3.613 7 O -0.430 6.430 8 C -0.230 4.230 9 C -0.067 4.067 10 N -0.137 5.137 11 C 0.087 3.913 12 C -0.220 4.220 13 C -0.207 4.207 14 C -0.221 4.221 15 N -0.042 5.042 16 N -0.072 5.072 17 C -0.054 4.054 18 C -0.185 4.185 19 C 0.072 3.928 20 H 0.064 0.936 21 N -0.361 5.361 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.736 3.264 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.217 0.783 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.151 0.849 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.348 -2.962 -20.677 28.472 hybrid contribution -0.580 0.094 0.147 0.606 sum 18.768 -2.867 -20.530 27.963 Atomic orbital electron populations 1.21651 0.94126 1.01739 1.01776 1.21743 0.96456 1.00044 0.94711 0.91308 1.21752 0.78183 1.00940 0.99314 1.47953 1.06936 1.58716 1.18116 1.16818 0.83495 0.77605 0.83408 1.90761 1.74028 1.50155 1.28064 1.21490 0.95980 1.14874 0.90701 1.23184 0.83950 0.98607 1.00926 1.50813 1.06560 1.46324 1.10007 1.21094 0.79953 0.97446 0.92827 1.22294 1.03601 0.92364 1.03731 1.21999 0.95894 1.02285 1.00509 1.22299 1.04266 1.01548 0.93973 1.82017 1.10572 1.19227 0.92429 1.74277 0.98790 1.11921 1.22239 1.22882 1.02488 0.96238 0.83760 1.22562 0.99430 1.00398 0.96064 1.20250 0.90835 0.95496 0.86229 0.93566 1.42399 1.76716 1.11264 1.05742 1.19185 1.35572 0.94014 0.87731 0.91314 1.24712 1.02328 0.96012 0.97975 1.69650 1.50335 1.09396 1.28894 0.86304 0.77716 0.78675 0.83716 1.21354 1.21829 1.21375 0.93066 0.90762 0.93864 0.89431 0.91465 0.78330 0.91093 0.89653 0.91338 0.91177 0.90167 0.90505 0.91126 0.89410 0.91118 0.92292 0.84948 0.90783 0.92417 0.78298 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.03 37.16 0.34 -1.95 16 2 C -0.11 -1.92 2.46 -90.48 -0.22 -2.14 16 3 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.12 1.89 5.69 -3.71 -0.02 1.87 16 5 N -0.59 -9.39 2.97 -174.00 -0.52 -9.91 16 6 C 0.60 9.56 7.68 -12.47 -0.10 9.46 16 7 O -0.55 -9.60 16.32 5.29 0.09 -9.52 16 8 C -0.09 -1.27 6.75 -83.56 -0.56 -1.83 16 9 C 0.09 0.93 10.44 -16.83 -0.18 0.75 16 10 N -0.35 -3.33 3.44 -48.36 -0.17 -3.50 16 11 C 0.17 0.97 1.25 -131.82 -0.16 0.80 16 12 C -0.16 -0.75 8.74 37.16 0.32 -0.42 16 13 C -0.15 -0.79 8.11 37.16 0.30 -0.49 16 14 C -0.16 -0.59 8.30 37.16 0.31 -0.28 16 15 N -0.06 -0.82 12.91 60.35 0.78 -0.04 16 16 N -0.20 -2.92 8.70 32.84 0.29 -2.63 16 17 C 0.07 1.12 6.32 -3.71 -0.02 1.10 16 18 C -0.14 -2.71 5.66 -26.61 -0.15 -2.86 16 19 C 0.18 3.68 2.19 -67.87 -0.15 3.53 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -18.04 4.41 -53.37 -0.24 -18.27 16 22 C -0.23 -6.47 9.93 -15.06 -0.15 -6.62 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 26 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.46 7.38 -51.93 -0.38 1.08 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.37 7.05 -51.93 -0.37 1.00 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.20 1.46 7.62 -52.48 -0.40 1.06 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 42 H 0.07 0.23 7.43 -51.93 -0.39 -0.16 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.13 2.10 3.66 -121.51 -0.44 1.66 16 47 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 49 H 0.38 10.30 7.52 -40.82 -0.31 9.99 16 50 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -33.38 397.68 -7.21 -40.58 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.59 Total: 6.98 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.54 Total: 0.39 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.87 Total: -62.05 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.38 -7.21 -40.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036045581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.795 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds