Wall clock time and date at job start Wed Apr 1 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.52485 * 2 1 4 4 C 1.53188 * 109.49666 * 239.91535 * 2 1 3 5 5 N 1.46932 * 108.89141 * 185.48463 * 4 2 1 6 6 C 1.34781 * 120.62946 * 233.51766 * 5 4 2 7 7 O 1.21590 * 119.99961 * 353.71029 * 6 5 4 8 8 C 1.47522 * 119.99542 * 173.71567 * 6 5 4 9 9 C 1.36594 * 125.76704 * 173.19230 * 8 6 5 10 10 N 1.34816 * 106.84183 * 179.89443 * 9 8 6 11 11 C 1.46497 * 126.59858 * 180.13234 * 10 9 8 12 12 C 1.53000 * 109.47333 * 75.24383 * 11 10 9 13 13 C 1.52996 * 109.47210 * 195.24817 * 11 10 9 14 14 C 1.52998 * 109.46936 * 315.24502 * 11 10 9 15 15 N 1.40210 * 106.80573 * 0.35688 * 10 9 8 16 16 N 1.28764 * 108.36854 * 359.77121 * 15 10 9 17 17 C 1.46926 * 118.73732 * 53.53882 * 5 4 2 18 18 C 1.53190 * 108.77474 * 306.38979 * 17 5 4 19 19 C 1.53037 * 109.31217 * 54.64141 * 18 17 5 20 20 H 1.08994 * 109.46867 * 58.64879 * 19 18 17 21 21 N 1.46500 * 109.45809 * 178.63028 * 19 18 17 22 22 C 1.36941 * 119.99576 * 274.98939 * 21 19 18 23 23 H 1.07996 * 120.00217 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99882 * 180.02562 * 22 21 19 25 25 N 1.31614 * 120.00060 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99801 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47098 * 60.00316 * 26 24 22 28 28 H 1.48500 * 109.47007 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47248 * 300.00160 * 26 24 22 30 30 H 1.08995 * 109.46769 * 180.08304 * 1 2 3 31 31 H 1.09001 * 109.47239 * 300.08140 * 1 2 3 32 32 H 1.08999 * 109.47122 * 60.08086 * 1 2 3 33 33 H 1.09003 * 109.58709 * 65.63274 * 4 2 1 34 34 H 1.08991 * 109.59024 * 305.34451 * 4 2 1 35 35 H 1.08005 * 126.57905 * 0.03676 * 9 8 6 36 36 H 1.08999 * 109.46837 * 59.99769 * 12 11 10 37 37 H 1.08995 * 109.47039 * 180.02562 * 12 11 10 38 38 H 1.09005 * 109.46762 * 300.00147 * 12 11 10 39 39 H 1.09001 * 109.47484 * 59.99445 * 13 11 10 40 40 H 1.09000 * 109.47093 * 180.02562 * 13 11 10 41 41 H 1.09004 * 109.46677 * 299.99587 * 13 11 10 42 42 H 1.09005 * 109.47373 * 59.99723 * 14 11 10 43 43 H 1.08995 * 109.47350 * 180.02562 * 14 11 10 44 44 H 1.08997 * 109.47280 * 300.00182 * 14 11 10 45 45 H 1.09002 * 109.58749 * 66.17792 * 17 5 4 46 46 H 1.09003 * 109.58317 * 186.60513 * 17 5 4 47 47 H 1.09008 * 109.49604 * 174.58509 * 18 17 5 48 48 H 1.08997 * 109.50065 * 294.68331 * 18 17 5 49 49 H 0.96991 * 120.00686 * 94.99607 * 21 19 18 50 50 H 0.97005 * 120.00063 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5045 -0.8321 -1.1713 6 6 4.2806 -0.3916 -2.1814 7 8 3.7712 -0.0050 -3.2154 8 6 5.7483 -0.3788 -2.0322 9 6 6.6482 -0.0840 -3.0166 10 7 7.8751 -0.1842 -2.4668 11 6 9.1556 0.0452 -3.1407 12 6 9.3718 1.5483 -3.3270 13 6 10.2896 -0.5318 -2.2911 14 6 9.1425 -0.6415 -4.5079 15 7 7.6902 -0.5552 -1.1274 16 7 6.4260 -0.6607 -0.9065 17 6 4.1055 -1.4301 0.0287 18 6 3.5742 -0.6965 1.2641 19 6 2.0441 -0.7215 1.2484 20 1 1.6978 -1.7549 1.2365 21 7 1.5327 -0.0491 2.4454 22 6 1.4013 -0.7445 3.6178 23 1 1.6750 -1.7883 3.6601 24 6 0.9163 -0.1076 4.7518 25 7 0.5823 1.1644 4.7001 26 14 0.7378 -1.0559 6.3513 27 1 2.0650 -1.5737 6.7706 28 1 0.2035 -0.1550 7.4039 29 1 -0.1964 -2.1927 6.1511 30 1 -0.3633 -1.0276 0.0015 31 1 -0.3634 0.5151 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1580 -2.1389 34 1 1.6033 -1.7207 -1.2993 35 1 6.4205 0.1810 -4.0385 36 1 9.3810 2.0375 -2.3530 37 1 10.3242 1.7189 -3.8288 38 1 8.5638 1.9593 -3.9324 39 1 10.1355 -1.6027 -2.1583 40 1 11.2423 -0.3607 -2.7923 41 1 10.2989 -0.0426 -1.3170 42 1 8.3345 -0.2305 -5.1132 43 1 10.0953 -0.4713 -5.0091 44 1 8.9884 -1.7123 -4.3752 45 1 3.8357 -2.4847 0.0857 46 1 5.1900 -1.3302 -0.0173 47 1 3.9369 -1.1913 2.1651 48 1 3.9213 0.3367 1.2510 49 1 1.2872 0.8884 2.4075 50 1 0.2430 1.6094 5.4925 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036045581.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:03 Heat of formation + Delta-G solvation = 57.727450 kcal Electronic energy + Delta-G solvation = -29800.498828 eV Core-core repulsion = 25864.674190 eV Total energy + Delta-G solvation = -3935.824638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.40128 -41.05021 -38.97919 -38.31683 -36.18319 -34.50679 -33.11893 -32.98541 -31.88021 -30.98672 -28.52308 -28.41276 -27.73167 -26.76156 -24.93358 -24.82644 -23.43045 -23.03866 -21.66973 -21.12168 -20.16209 -19.02992 -18.16911 -17.63675 -17.13261 -17.04483 -16.72982 -16.09736 -15.88704 -15.69065 -15.40227 -15.26392 -14.97896 -14.96245 -14.86742 -14.34800 -13.95955 -13.70749 -13.65257 -13.42304 -13.37368 -13.17295 -13.13929 -12.94287 -12.82236 -12.77024 -12.74881 -12.46808 -12.44423 -12.25856 -12.19023 -12.00933 -11.82936 -11.75168 -11.47905 -11.28498 -11.14401 -11.09443 -10.67205 -10.39162 -9.63802 -8.94294 -7.89893 -5.17337 0.15064 0.55938 1.03417 1.47953 1.50864 1.56516 1.94292 2.17776 2.58853 3.07605 3.23315 3.43197 3.58957 3.65732 3.77567 3.81347 3.83856 3.91535 4.08415 4.15623 4.18997 4.26264 4.40084 4.46653 4.55272 4.58371 4.60710 4.68349 4.70553 4.74534 4.80315 4.80519 4.81241 4.85653 4.95737 5.05317 5.08578 5.17282 5.20302 5.23544 5.30250 5.37255 5.46866 5.51876 5.55775 5.57242 5.71661 6.30832 6.33070 6.83350 7.08860 7.37756 8.13915 8.38094 9.33603 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.002651 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.464674 B =10559.198958 C =11658.539723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.127 3.873 5 N -0.593 5.593 6 C 0.602 3.398 7 O -0.568 6.568 8 C -0.121 4.121 9 C 0.110 3.890 10 N -0.336 5.336 11 C 0.158 3.842 12 C -0.159 4.159 13 C -0.149 4.149 14 C -0.159 4.159 15 N -0.084 5.084 16 N -0.227 5.227 17 C 0.081 3.919 18 C -0.132 4.132 19 C 0.179 3.821 20 H 0.047 0.953 21 N -0.731 5.731 22 C -0.231 4.231 23 H 0.075 0.925 24 C -0.078 4.078 25 N -0.971 5.971 26 Si 0.969 3.031 27 H -0.280 1.280 28 H -0.298 1.298 29 H -0.277 1.277 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.140 0.860 47 H 0.059 0.941 48 H 0.037 0.963 49 H 0.370 0.630 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.564 -3.760 -24.120 31.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.005 3.995 5 N -0.323 5.323 6 C 0.389 3.611 7 O -0.448 6.448 8 C -0.260 4.260 9 C -0.048 4.048 10 N -0.122 5.122 11 C 0.078 3.922 12 C -0.217 4.217 13 C -0.206 4.206 14 C -0.217 4.217 15 N -0.063 5.063 16 N -0.099 5.099 17 C -0.043 4.043 18 C -0.173 4.173 19 C 0.071 3.929 20 H 0.065 0.935 21 N -0.370 5.370 22 C -0.363 4.363 23 H 0.093 0.907 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.799 3.201 27 H -0.206 1.206 28 H -0.225 1.225 29 H -0.204 1.204 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.157 0.843 47 H 0.077 0.923 48 H 0.056 0.944 49 H 0.202 0.798 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.067 -4.043 -23.215 31.609 hybrid contribution -0.957 0.446 0.796 1.322 sum 20.110 -3.598 -22.419 30.331 Atomic orbital electron populations 1.21561 0.93479 1.02131 1.01386 1.21612 0.96925 0.98993 0.94450 0.92984 1.21693 0.78242 1.01624 0.97981 1.47984 1.07104 1.59016 1.18170 1.17042 0.84333 0.76774 0.82954 1.90738 1.74639 1.50847 1.28579 1.21430 0.95391 1.17366 0.91818 1.23610 0.83387 0.96352 1.01432 1.51193 1.07761 1.44301 1.08917 1.21618 0.78198 0.98711 0.93698 1.22323 1.05379 0.90966 1.03060 1.22029 0.97277 1.01286 1.00004 1.22341 1.06206 1.00704 0.92487 1.81934 1.09808 1.20114 0.94423 1.74147 0.99541 1.13008 1.23162 1.22769 1.02890 0.96290 0.82308 1.22354 0.98295 0.99460 0.97186 1.20450 0.91452 0.95296 0.85733 0.93509 1.42568 1.76986 1.10738 1.06666 1.19559 1.33823 0.94325 0.88602 0.90699 1.25498 1.03207 0.96952 1.01281 1.69817 1.52121 1.11001 1.29318 0.85271 0.77842 0.77396 0.79634 1.20646 1.22475 1.20360 0.92225 0.94091 0.91256 0.88875 0.89696 0.75157 0.93009 0.86731 0.90972 0.92235 0.87121 0.92354 0.90244 0.86698 0.91937 0.90939 0.84312 0.92279 0.94423 0.79787 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 9.03 71.98 0.65 -3.63 16 2 C -0.10 -3.50 2.46 -10.70 -0.03 -3.53 16 3 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 4 C 0.13 3.81 5.69 86.36 0.49 4.30 16 5 N -0.59 -18.51 2.97 -822.67 -2.45 -20.96 16 6 C 0.60 18.58 7.68 86.69 0.67 19.24 16 7 O -0.57 -18.97 16.32 -4.00 -0.07 -19.03 16 8 C -0.12 -3.24 6.75 40.82 0.28 -2.96 16 9 C 0.11 2.06 10.44 83.85 0.88 2.94 16 10 N -0.34 -5.87 3.44 -306.91 -1.06 -6.92 16 11 C 0.16 1.42 1.25 3.60 0.00 1.42 16 12 C -0.16 -1.04 8.74 71.98 0.63 -0.41 16 13 C -0.15 -1.30 8.11 71.98 0.58 -0.72 16 14 C -0.16 -0.60 8.30 71.98 0.60 -0.01 16 15 N -0.08 -2.15 12.91 37.02 0.48 -1.67 16 16 N -0.23 -6.61 8.70 -50.00 -0.44 -7.04 16 17 C 0.08 2.57 6.32 86.36 0.55 3.12 16 18 C -0.13 -5.09 5.66 30.67 0.17 -4.92 16 19 C 0.18 7.32 2.19 45.03 0.10 7.42 16 20 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 21 N -0.73 -37.58 4.41 -322.76 -1.42 -39.00 16 22 C -0.23 -12.98 9.93 84.03 0.83 -12.15 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 25 N -0.97 -60.77 13.06 21.65 0.28 -60.48 16 26 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 27 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 28 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 29 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.64 7.38 -2.39 -0.02 1.62 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.09 2.75 7.05 -2.39 -0.02 2.73 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.23 2.64 7.62 -2.91 -0.02 2.62 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.06 0.74 8.06 -2.38 -0.02 0.72 16 42 H 0.08 0.20 7.43 -2.38 -0.02 0.18 16 43 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.14 4.42 3.66 -92.42 -0.34 4.08 16 47 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 48 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.37 20.76 7.52 -92.71 -0.70 20.06 16 50 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -74.18 397.68 4.13 -70.05 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.09 Total: 29.81 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 6.87 Total: 6.06 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -4.60 Total: -136.07 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.07 Total: -19.03 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -74.18 4.13 -70.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036045581.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.773 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds