Wall clock time and date at job start Wed Apr 1 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.52799 * 2 1 4 4 C 1.53194 * 109.50066 * 120.07996 * 2 1 3 5 5 N 1.46927 * 108.77727 * 174.58372 * 4 2 1 6 6 C 1.34778 * 120.62709 * 126.41436 * 5 4 2 7 7 O 1.21546 * 120.00407 * 352.74937 * 6 5 4 8 8 C 1.47870 * 119.99895 * 172.75173 * 6 5 4 9 9 N 1.34557 * 126.04725 * 352.19922 * 8 6 5 10 10 C 1.30863 * 107.27171 * 180.02562 * 9 8 6 11 11 N 1.34591 * 107.62402 * 359.97438 * 10 9 8 12 12 C 1.46504 * 125.74742 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46859 * 75.00684 * 12 11 10 14 14 C 1.53001 * 109.46995 * 195.00292 * 12 11 10 15 15 C 1.52995 * 109.47225 * 315.00576 * 12 11 10 16 16 N 1.28856 * 108.50235 * 359.73911 * 11 10 9 17 17 C 1.46925 * 118.74155 * 306.39485 * 5 4 2 18 18 C 1.53192 * 108.77452 * 53.60344 * 17 5 4 19 19 C 1.53032 * 109.31510 * 305.36769 * 18 17 5 20 20 H 1.09004 * 109.46436 * 301.35875 * 19 18 17 21 21 N 1.46505 * 109.45987 * 181.38629 * 19 18 17 22 22 C 1.36932 * 120.00020 * 85.00062 * 21 19 18 23 23 H 1.08003 * 120.00354 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99914 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99899 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00112 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47054 * 269.99489 * 26 24 22 28 28 H 1.48497 * 109.46985 * 29.99434 * 26 24 22 29 29 H 1.48501 * 109.47074 * 149.99581 * 26 24 22 30 30 H 1.09005 * 109.47541 * 180.08503 * 1 2 3 31 31 H 1.08999 * 109.46894 * 300.07688 * 1 2 3 32 32 H 1.09002 * 109.47617 * 60.07961 * 1 2 3 33 33 H 1.09007 * 109.58225 * 54.79940 * 4 2 1 34 34 H 1.08996 * 109.58584 * 294.37551 * 4 2 1 35 35 H 1.08001 * 126.19353 * 179.97438 * 10 9 8 36 36 H 1.09007 * 109.47505 * 59.99525 * 13 12 11 37 37 H 1.08999 * 109.47255 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.47318 * 299.99638 * 13 12 11 39 39 H 1.09007 * 109.46648 * 59.99978 * 14 12 11 40 40 H 1.08993 * 109.47432 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.47331 * 300.00875 * 14 12 11 42 42 H 1.09004 * 109.47180 * 60.00222 * 15 12 11 43 43 H 1.09006 * 109.46909 * 180.02562 * 15 12 11 44 44 H 1.08999 * 109.47217 * 299.99556 * 15 12 11 45 45 H 1.09010 * 109.58419 * 293.82361 * 17 5 4 46 46 H 1.08997 * 109.59055 * 173.39477 * 17 5 4 47 47 H 1.09005 * 109.49786 * 185.41341 * 18 17 5 48 48 H 1.08998 * 109.49313 * 65.32522 * 18 17 5 49 49 H 0.97003 * 119.99835 * 264.99886 * 21 19 18 50 50 H 0.97003 * 119.99912 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1695 6 6 4.2811 -0.3864 2.1782 7 8 3.7844 0.2233 3.1051 8 6 5.7373 -0.6423 2.1574 9 7 6.3916 -1.4230 1.2782 10 6 7.6603 -1.3887 1.5971 11 7 7.7889 -0.5877 2.6711 12 6 9.0442 -0.2701 3.3564 13 6 9.8482 0.7222 2.5139 14 6 8.7374 0.3507 4.7208 15 6 9.8578 -1.5512 3.5503 16 7 6.6229 -0.1426 2.9913 17 6 4.1053 -1.4267 -0.0308 18 6 3.5707 -0.6950 -1.2660 19 6 2.0408 -0.7231 -1.2483 20 1 1.6966 -1.7573 -1.2350 21 7 1.5264 -0.0530 -2.4453 22 6 1.3950 -0.7497 -3.6168 23 1 1.6701 -1.7932 -3.6584 24 6 0.9072 -0.1148 -4.7508 25 7 0.7813 -0.7843 -5.8770 26 14 0.4307 1.6899 -4.6789 27 1 -1.0001 1.8094 -4.2996 28 1 1.2700 2.3836 -3.6692 29 1 0.6433 2.3115 -6.0107 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5126 -0.8907 33 1 1.6052 -1.7216 1.2980 34 1 1.7638 -0.1579 2.1389 35 1 8.4596 -1.9089 1.0903 36 1 9.2685 1.6349 2.3758 37 1 10.7820 0.9589 3.0240 38 1 10.0668 0.2800 1.5419 39 1 8.1645 -0.3563 5.3210 40 1 9.6713 0.5874 5.2305 41 1 8.1577 1.2633 4.5827 42 1 10.0764 -1.9933 2.5782 43 1 10.7916 -1.3148 4.0606 44 1 9.2851 -2.2580 4.1505 45 1 3.8374 -2.4819 -0.0868 46 1 5.1895 -1.3246 0.0136 47 1 3.9333 -1.1897 -2.1672 48 1 3.9159 0.3388 -1.2541 49 1 1.2790 0.8842 -2.4079 50 1 0.4407 -0.3406 -6.6696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036180744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:16 Heat of formation + Delta-G solvation = 79.595157 kcal Electronic energy + Delta-G solvation = -29894.708935 eV Core-core repulsion = 25959.832551 eV Total energy + Delta-G solvation = -3934.876383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.73493 -39.91858 -37.86580 -37.47998 -34.72374 -33.16668 -32.49582 -31.48718 -31.14201 -29.74254 -28.15225 -28.03826 -26.88794 -25.35958 -23.88169 -23.31297 -22.21709 -21.47563 -20.46682 -20.11158 -19.29916 -17.57975 -17.32861 -16.85004 -16.65094 -16.13969 -15.17498 -14.92692 -14.87017 -14.70328 -14.36408 -14.28445 -13.76911 -13.68966 -13.32621 -13.19537 -13.08646 -12.95421 -12.83278 -12.53289 -12.45379 -12.41726 -12.16521 -11.94055 -11.81165 -11.67278 -11.50775 -11.32056 -10.98920 -10.83732 -10.69763 -10.59322 -10.49078 -10.22760 -10.18597 -9.77109 -9.70615 -9.63352 -9.52066 -8.83457 -8.42049 -7.20214 -5.73245 -3.07624 1.29512 1.84362 1.93541 2.96177 3.36674 3.40543 3.44319 3.48284 3.77012 3.93684 4.03481 4.14384 4.40061 4.56123 4.62832 4.79557 4.90809 4.98067 5.02193 5.10083 5.14250 5.15901 5.18595 5.32423 5.36975 5.44413 5.50472 5.59285 5.65446 5.70353 5.72170 5.83952 5.85664 6.00414 6.04416 6.09877 6.23113 6.26529 6.36270 6.39216 6.47185 6.58266 6.73241 6.77446 6.93113 7.07577 7.47707 7.84109 8.03664 8.23516 8.46232 9.25034 9.98031 10.18694 11.45277 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.002674 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.618575 B =10468.783223 C =11169.029628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.069 0.931 4 C 0.122 3.878 5 N -0.585 5.585 6 C 0.613 3.387 7 O -0.531 6.531 8 C 0.148 3.852 9 N -0.476 5.476 10 C 0.187 3.813 11 N -0.293 5.293 12 C 0.167 3.833 13 C -0.161 4.161 14 C -0.149 4.149 15 C -0.160 4.160 16 N -0.249 5.249 17 C 0.081 3.919 18 C -0.149 4.149 19 C 0.187 3.813 20 H 0.057 0.943 21 N -0.746 5.746 22 C -0.237 4.237 23 H 0.090 0.910 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.881 3.119 27 H -0.284 1.284 28 H -0.278 1.278 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.222 0.778 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.130 0.870 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.360 0.640 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.674 -1.262 21.141 29.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.000 4.000 5 N -0.317 5.317 6 C 0.396 3.604 7 O -0.405 6.405 8 C -0.132 4.132 9 N -0.201 5.201 10 C -0.107 4.107 11 N -0.090 5.090 12 C 0.085 3.915 13 C -0.219 4.219 14 C -0.206 4.206 15 C -0.218 4.218 16 N -0.087 5.087 17 C -0.041 4.041 18 C -0.190 4.190 19 C 0.078 3.922 20 H 0.075 0.925 21 N -0.388 5.388 22 C -0.367 4.367 23 H 0.108 0.892 24 C -0.192 4.192 25 N -0.584 5.584 26 Si 0.712 3.288 27 H -0.211 1.211 28 H -0.204 1.204 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.147 0.853 47 H 0.098 0.902 48 H 0.072 0.928 49 H 0.193 0.807 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.054 -0.861 21.708 29.566 hybrid contribution 0.056 1.145 -0.460 1.235 sum 20.111 0.284 21.248 29.257 Atomic orbital electron populations 1.21665 0.94105 1.02156 1.01526 1.21785 0.96516 1.00108 0.94955 0.91291 1.21762 0.77830 1.01108 0.99307 1.47878 1.06784 1.59285 1.17789 1.16349 0.82061 0.79254 0.82715 1.90786 1.73361 1.40610 1.35770 1.23760 0.96379 0.99641 0.93408 1.71216 1.02752 1.21335 1.24829 1.26508 0.96719 0.97089 0.90432 1.47784 1.06666 1.32261 1.22278 1.21168 0.79043 0.97323 0.94001 1.22275 1.00425 0.99015 1.00172 1.21997 1.02909 1.02514 0.93213 1.22262 1.00491 0.95405 1.03657 1.74284 0.90706 1.20226 1.23480 1.22716 1.01911 0.96666 0.82826 1.22618 0.99331 1.00289 0.96769 1.20217 0.90874 0.95925 0.85221 0.92481 1.42791 1.78286 1.10017 1.07701 1.19068 1.35834 0.95683 0.86127 0.89180 1.24648 1.01572 0.97329 0.95658 1.69700 1.52404 1.35626 1.00632 0.86592 0.78568 0.86931 0.76710 1.21119 1.20377 1.21896 0.92508 0.93532 0.91476 0.91004 0.89198 0.76216 0.91189 0.89582 0.91216 0.91260 0.90323 0.90514 0.91024 0.89317 0.91126 0.91679 0.85325 0.90204 0.92761 0.80709 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.03 37.15 0.34 -1.82 16 2 C -0.11 -1.89 2.46 -90.50 -0.22 -2.11 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.12 1.85 5.73 -3.71 -0.02 1.83 16 5 N -0.59 -9.30 2.97 -173.87 -0.52 -9.81 16 6 C 0.61 10.45 7.69 -12.32 -0.09 10.36 16 7 O -0.53 -10.32 16.51 5.33 0.09 -10.23 16 8 C 0.15 2.23 7.64 -156.35 -1.19 1.04 16 9 N -0.48 -6.10 7.88 -12.36 -0.10 -6.20 16 10 C 0.19 1.68 11.71 -90.48 -1.06 0.62 16 11 N -0.29 -2.78 3.16 -49.84 -0.16 -2.93 16 12 C 0.17 0.93 1.22 -131.82 -0.16 0.77 16 13 C -0.16 -0.68 8.72 37.15 0.32 -0.36 16 14 C -0.15 -0.88 8.05 37.16 0.30 -0.58 16 15 C -0.16 -0.47 8.28 37.16 0.31 -0.17 16 16 N -0.25 -3.41 11.10 32.07 0.36 -3.06 16 17 C 0.08 1.24 6.08 -3.71 -0.02 1.22 16 18 C -0.15 -2.66 5.66 -26.62 -0.15 -2.81 16 19 C 0.19 3.59 2.19 -67.89 -0.15 3.45 16 20 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 21 N -0.75 -17.47 4.21 -53.38 -0.22 -17.69 16 22 C -0.24 -6.59 10.41 -15.06 -0.16 -6.74 16 23 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 24 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 25 N -0.94 -29.35 13.97 55.49 0.78 -28.58 16 26 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 27 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.19 7.36 -51.93 -0.38 0.81 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 35 H 0.22 0.93 7.53 -52.49 -0.39 0.54 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.60 8.02 -51.93 -0.42 0.19 16 42 H 0.07 0.13 7.34 -51.93 -0.38 -0.25 16 43 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 46 H 0.13 1.92 4.16 -59.27 -0.25 1.67 16 47 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.36 8.47 5.37 -40.82 -0.22 8.25 16 50 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -35.67 393.87 -8.95 -44.62 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.33 Total: 5.62 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.06 Total: 4.70 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: 0.13 Total: -68.27 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.67 -8.95 -44.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036180744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.219 kcal (2) G-P(sol) polarization free energy of solvation -35.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds