Wall clock time and date at job start Wed Apr 1 2020 00:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.52799 * 2 1 4 4 C 1.53194 * 109.50066 * 120.07996 * 2 1 3 5 5 N 1.46927 * 108.77727 * 174.58372 * 4 2 1 6 6 C 1.34778 * 120.62709 * 126.41436 * 5 4 2 7 7 O 1.21546 * 120.00407 * 352.74937 * 6 5 4 8 8 C 1.47870 * 119.99895 * 172.75173 * 6 5 4 9 9 N 1.34557 * 126.04725 * 352.19922 * 8 6 5 10 10 C 1.30863 * 107.27171 * 180.02562 * 9 8 6 11 11 N 1.34591 * 107.62402 * 359.97438 * 10 9 8 12 12 C 1.46504 * 125.74742 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46859 * 75.00684 * 12 11 10 14 14 C 1.53001 * 109.46995 * 195.00292 * 12 11 10 15 15 C 1.52995 * 109.47225 * 315.00576 * 12 11 10 16 16 N 1.28856 * 108.50235 * 359.73911 * 11 10 9 17 17 C 1.46925 * 118.74155 * 306.39485 * 5 4 2 18 18 C 1.53192 * 108.77452 * 53.60344 * 17 5 4 19 19 C 1.53032 * 109.31510 * 305.36769 * 18 17 5 20 20 H 1.09004 * 109.46436 * 301.35875 * 19 18 17 21 21 N 1.46505 * 109.45987 * 181.38629 * 19 18 17 22 22 C 1.36932 * 120.00020 * 85.00062 * 21 19 18 23 23 H 1.08003 * 120.00354 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99914 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99899 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00112 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47054 * 269.99489 * 26 24 22 28 28 H 1.48497 * 109.46985 * 29.99434 * 26 24 22 29 29 H 1.48501 * 109.47074 * 149.99581 * 26 24 22 30 30 H 1.09005 * 109.47541 * 180.08503 * 1 2 3 31 31 H 1.08999 * 109.46894 * 300.07688 * 1 2 3 32 32 H 1.09002 * 109.47617 * 60.07961 * 1 2 3 33 33 H 1.09007 * 109.58225 * 54.79940 * 4 2 1 34 34 H 1.08996 * 109.58584 * 294.37551 * 4 2 1 35 35 H 1.08001 * 126.19353 * 179.97438 * 10 9 8 36 36 H 1.09007 * 109.47505 * 59.99525 * 13 12 11 37 37 H 1.08999 * 109.47255 * 179.97438 * 13 12 11 38 38 H 1.09004 * 109.47318 * 299.99638 * 13 12 11 39 39 H 1.09007 * 109.46648 * 59.99978 * 14 12 11 40 40 H 1.08993 * 109.47432 * 180.02562 * 14 12 11 41 41 H 1.08997 * 109.47331 * 300.00875 * 14 12 11 42 42 H 1.09004 * 109.47180 * 60.00222 * 15 12 11 43 43 H 1.09006 * 109.46909 * 180.02562 * 15 12 11 44 44 H 1.08999 * 109.47217 * 299.99556 * 15 12 11 45 45 H 1.09010 * 109.58419 * 293.82361 * 17 5 4 46 46 H 1.08997 * 109.59055 * 173.39477 * 17 5 4 47 47 H 1.09005 * 109.49786 * 185.41341 * 18 17 5 48 48 H 1.08998 * 109.49313 * 65.32522 * 18 17 5 49 49 H 0.97003 * 119.99835 * 264.99886 * 21 19 18 50 50 H 0.97003 * 119.99912 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1695 6 6 4.2811 -0.3864 2.1782 7 8 3.7844 0.2233 3.1051 8 6 5.7373 -0.6423 2.1574 9 7 6.3916 -1.4230 1.2782 10 6 7.6603 -1.3887 1.5971 11 7 7.7889 -0.5877 2.6711 12 6 9.0442 -0.2701 3.3564 13 6 9.8482 0.7222 2.5139 14 6 8.7374 0.3507 4.7208 15 6 9.8578 -1.5512 3.5503 16 7 6.6229 -0.1426 2.9913 17 6 4.1053 -1.4267 -0.0308 18 6 3.5707 -0.6950 -1.2660 19 6 2.0408 -0.7231 -1.2483 20 1 1.6966 -1.7573 -1.2350 21 7 1.5264 -0.0530 -2.4453 22 6 1.3950 -0.7497 -3.6168 23 1 1.6701 -1.7932 -3.6584 24 6 0.9072 -0.1148 -4.7508 25 7 0.7813 -0.7843 -5.8770 26 14 0.4307 1.6899 -4.6789 27 1 -1.0001 1.8094 -4.2996 28 1 1.2700 2.3836 -3.6692 29 1 0.6433 2.3115 -6.0107 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5126 -0.8907 33 1 1.6052 -1.7216 1.2980 34 1 1.7638 -0.1579 2.1389 35 1 8.4596 -1.9089 1.0903 36 1 9.2685 1.6349 2.3758 37 1 10.7820 0.9589 3.0240 38 1 10.0668 0.2800 1.5419 39 1 8.1645 -0.3563 5.3210 40 1 9.6713 0.5874 5.2305 41 1 8.1577 1.2633 4.5827 42 1 10.0764 -1.9933 2.5782 43 1 10.7916 -1.3148 4.0606 44 1 9.2851 -2.2580 4.1505 45 1 3.8374 -2.4819 -0.0868 46 1 5.1895 -1.3246 0.0136 47 1 3.9333 -1.1897 -2.1672 48 1 3.9159 0.3388 -1.2541 49 1 1.2790 0.8842 -2.4079 50 1 0.4407 -0.3406 -6.6696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036180744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:15 Heat of formation + Delta-G solvation = 57.586862 kcal Electronic energy + Delta-G solvation = -29895.663286 eV Core-core repulsion = 25959.832551 eV Total energy + Delta-G solvation = -3935.830735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.58561 -41.22257 -39.11522 -38.22797 -36.34613 -34.62336 -33.58989 -33.19091 -32.03118 -31.49485 -28.53703 -28.39968 -28.03332 -26.95082 -25.13037 -24.29792 -23.61253 -23.00152 -21.52205 -21.10582 -20.61912 -19.45832 -18.30983 -17.82171 -17.59657 -17.19886 -16.75788 -16.20371 -16.03524 -15.84193 -15.33525 -15.13113 -15.04942 -14.86198 -14.82654 -14.52697 -14.18890 -13.99272 -13.61538 -13.45649 -13.31567 -13.26224 -13.16507 -12.94643 -12.85531 -12.77645 -12.70203 -12.46207 -12.38524 -12.14431 -12.08193 -11.98151 -11.88129 -11.77180 -11.46444 -11.43556 -11.17905 -11.10794 -10.68631 -10.57221 -9.73409 -9.24498 -7.98746 -5.30350 0.29649 1.06368 1.15369 1.38449 1.39757 1.46843 1.85125 2.19637 2.50000 2.96194 3.23573 3.32855 3.54292 3.65262 3.66757 3.77939 3.80733 3.86595 4.00214 4.11992 4.33544 4.37125 4.45518 4.55055 4.58688 4.61024 4.67641 4.69424 4.72147 4.78343 4.80084 4.81157 4.84706 4.91176 5.01947 5.03450 5.11858 5.14762 5.20872 5.22755 5.27045 5.37433 5.46044 5.47139 5.58142 5.80151 5.83576 6.21355 6.25548 6.80572 7.09759 7.11020 7.87781 8.07064 9.22886 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.002674 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.618575 B =10468.783223 C =11169.029628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.060 0.940 4 C 0.125 3.875 5 N -0.585 5.585 6 C 0.609 3.391 7 O -0.564 6.564 8 C 0.118 3.882 9 N -0.498 5.498 10 C 0.201 3.799 11 N -0.285 5.285 12 C 0.157 3.843 13 C -0.157 4.157 14 C -0.148 4.148 15 C -0.156 4.156 16 N -0.270 5.270 17 C 0.093 3.907 18 C -0.139 4.139 19 C 0.182 3.818 20 H 0.052 0.948 21 N -0.747 5.747 22 C -0.216 4.216 23 H 0.062 0.938 24 C -0.063 4.063 25 N -0.984 5.984 26 Si 0.947 3.053 27 H -0.279 1.279 28 H -0.259 1.259 29 H -0.299 1.299 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.271 0.729 36 H 0.044 0.956 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.140 0.860 47 H 0.064 0.936 48 H 0.044 0.956 49 H 0.362 0.638 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.149 -1.177 22.731 32.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.078 0.922 4 C 0.003 3.997 5 N -0.316 5.316 6 C 0.394 3.606 7 O -0.441 6.441 8 C -0.160 4.160 9 N -0.225 5.225 10 C -0.092 4.092 11 N -0.082 5.082 12 C 0.077 3.923 13 C -0.215 4.215 14 C -0.206 4.206 15 C -0.213 4.213 16 N -0.110 5.110 17 C -0.030 4.030 18 C -0.180 4.180 19 C 0.074 3.926 20 H 0.070 0.930 21 N -0.389 5.389 22 C -0.347 4.347 23 H 0.080 0.920 24 C -0.254 4.254 25 N -0.635 5.635 26 Si 0.776 3.224 27 H -0.205 1.205 28 H -0.184 1.184 29 H -0.226 1.226 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.286 0.714 36 H 0.064 0.936 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.132 0.868 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.157 0.843 47 H 0.083 0.917 48 H 0.063 0.937 49 H 0.195 0.805 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 22.563 -0.780 23.353 32.482 hybrid contribution -0.548 1.042 -0.851 1.453 sum 22.015 0.262 22.502 31.481 Atomic orbital electron populations 1.21633 0.93187 1.02584 1.01723 1.21659 0.97229 0.99316 0.94121 0.92172 1.21770 0.77686 1.01911 0.98321 1.47916 1.07018 1.58979 1.17701 1.16648 0.83118 0.78517 0.82283 1.90748 1.74331 1.42121 1.36943 1.23411 0.95756 1.01702 0.95140 1.71036 1.04433 1.21784 1.25197 1.27352 0.96498 0.95779 0.89594 1.48196 1.06494 1.31238 1.22258 1.21667 0.77808 0.99317 0.93537 1.22297 1.00812 0.97474 1.00923 1.22012 1.03859 1.00880 0.93833 1.22305 1.00645 0.93488 1.04901 1.74211 0.92120 1.20853 1.23858 1.22656 1.02491 0.96563 0.81242 1.22437 0.98077 0.99900 0.97563 1.20428 0.91671 0.95625 0.84852 0.93008 1.42797 1.78515 1.09991 1.07644 1.19014 1.33581 0.94655 0.87489 0.92016 1.25373 1.02800 1.01827 0.95415 1.69867 1.54590 1.37579 1.01468 0.85523 0.78606 0.81679 0.76641 1.20499 1.18449 1.22563 0.92003 0.91055 0.93507 0.89223 0.89045 0.71399 0.93634 0.86818 0.90032 0.92881 0.87204 0.93091 0.89140 0.86799 0.92270 0.90652 0.84315 0.91733 0.93730 0.80532 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.03 71.98 0.65 -3.37 16 2 C -0.10 -3.33 2.46 -10.72 -0.03 -3.36 16 3 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.13 3.67 5.73 86.36 0.49 4.16 16 5 N -0.58 -18.25 2.97 -822.27 -2.44 -20.70 16 6 C 0.61 20.84 7.69 86.79 0.67 21.51 16 7 O -0.56 -22.29 16.51 -3.86 -0.06 -22.35 16 8 C 0.12 3.54 7.64 137.13 1.05 4.59 16 9 N -0.50 -12.06 7.88 -193.03 -1.52 -13.58 16 10 C 0.20 3.09 11.71 180.30 2.11 5.20 16 11 N -0.29 -4.91 3.16 -311.59 -0.99 -5.90 16 12 C 0.16 1.36 1.22 3.60 0.00 1.36 16 13 C -0.16 -0.87 8.72 71.98 0.63 -0.25 16 14 C -0.15 -1.58 8.05 71.98 0.58 -1.00 16 15 C -0.16 -0.33 8.28 71.98 0.60 0.27 16 16 N -0.27 -7.35 11.10 -52.43 -0.58 -7.93 16 17 C 0.09 2.77 6.08 86.36 0.53 3.29 16 18 C -0.14 -4.94 5.66 30.67 0.17 -4.76 16 19 C 0.18 6.94 2.19 45.02 0.10 7.04 16 20 H 0.05 2.05 8.08 -2.38 -0.02 2.03 16 21 N -0.75 -34.87 4.21 -322.80 -1.36 -36.23 16 22 C -0.22 -12.19 10.41 84.03 0.87 -11.31 16 23 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 24 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 25 N -0.98 -63.22 13.97 21.65 0.30 -62.91 16 26 Si 0.95 46.47 27.74 68.60 1.90 48.37 16 27 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.26 -11.79 6.52 99.48 0.65 -11.14 16 29 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 30 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.60 7.36 -2.39 -0.02 1.58 16 33 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.09 2.71 7.00 -2.39 -0.02 2.69 16 35 H 0.27 1.00 7.53 -2.91 -0.02 0.98 16 36 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 39 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.05 0.81 8.02 -2.39 -0.02 0.79 16 42 H 0.09 -0.12 7.34 -2.38 -0.02 -0.14 16 43 H 0.11 -0.28 8.14 -2.38 -0.02 -0.29 16 44 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 46 H 0.14 4.00 4.16 -16.88 -0.07 3.93 16 47 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 48 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.36 16.68 5.37 -92.71 -0.50 16.18 16 50 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -80.82 393.87 4.46 -76.37 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.32 Total: 24.76 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 8.89 Total: 20.11 kcal Atomic # 7 Polarization: -140.67 SS G_CDS: -6.59 Total: -147.26 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Total: -80.82 4.46 -76.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036180744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.955 kcal (2) G-P(sol) polarization free energy of solvation -80.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds