Wall clock time and date at job start Wed Apr 1 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58544 * 2 1 4 4 C 1.53201 * 109.58071 * 120.27717 * 2 1 3 5 5 C 1.53041 * 109.30850 * 174.56693 * 4 2 1 6 6 H 1.09000 * 109.45776 * 178.62644 * 5 4 2 7 7 N 1.46501 * 109.46082 * 58.65519 * 5 4 2 8 8 C 1.36938 * 119.99688 * 154.97490 * 7 5 4 9 9 H 1.07997 * 120.00060 * 359.71775 * 8 7 5 10 10 C 1.38816 * 119.99812 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99885 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99840 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47082 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46759 * 119.99813 * 12 10 8 15 15 H 1.48503 * 109.46778 * 239.99621 * 12 10 8 16 16 C 1.53040 * 109.52796 * 298.64173 * 5 4 2 17 17 C 1.53165 * 109.32952 * 61.37326 * 16 5 4 18 18 N 1.46920 * 109.70732 * 239.63403 * 2 1 3 19 19 C 1.34784 * 120.63020 * 6.52221 * 18 2 1 20 20 O 1.21595 * 120.00019 * 6.83757 * 19 18 2 21 21 C 1.47516 * 120.00102 * 186.84567 * 19 18 2 22 22 C 1.36596 * 125.77176 * 187.14807 * 21 19 18 23 23 N 1.34813 * 106.83926 * 179.89866 * 22 21 19 24 24 C 1.46501 * 126.59406 * 180.13599 * 23 22 21 25 25 C 1.52996 * 109.47592 * 75.24013 * 24 23 22 26 26 C 1.53004 * 109.47090 * 195.24198 * 24 23 22 27 27 C 1.53002 * 109.46769 * 315.23746 * 24 23 22 28 28 N 1.40214 * 106.81222 * 0.35659 * 23 22 21 29 29 N 1.28755 * 108.36460 * 359.76982 * 28 23 22 30 30 H 1.09001 * 109.47331 * 292.49206 * 1 2 3 31 31 H 1.09001 * 109.46664 * 52.48870 * 1 2 3 32 32 H 1.09002 * 109.47255 * 172.48319 * 1 2 3 33 33 H 1.08994 * 109.49719 * 54.61680 * 4 2 1 34 34 H 1.08998 * 109.52287 * 294.53269 * 4 2 1 35 35 H 0.97003 * 119.99978 * 334.97173 * 7 5 4 36 36 H 0.97005 * 119.99974 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.49933 * 181.31611 * 16 5 4 38 38 H 1.08999 * 109.49527 * 301.40861 * 16 5 4 39 39 H 1.08999 * 109.59152 * 185.57183 * 17 16 5 40 40 H 1.08999 * 109.70669 * 65.21065 * 17 16 5 41 41 H 1.08002 * 126.57858 * 0.03667 * 22 21 19 42 42 H 1.09001 * 109.47157 * 59.99662 * 25 24 23 43 43 H 1.09000 * 109.47202 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46870 * 300.00220 * 25 24 23 45 45 H 1.09002 * 109.46966 * 59.99745 * 26 24 23 46 46 H 1.09000 * 109.47188 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.47127 * 299.99981 * 26 24 23 48 48 H 1.09005 * 109.46692 * 60.00421 * 27 24 23 49 49 H 1.08999 * 109.46877 * 179.97438 * 27 24 23 50 50 H 1.08998 * 109.47415 * 299.99934 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 1.2465 5 6 3.5677 -0.8433 1.1732 6 1 3.9379 -1.3391 2.0705 7 7 4.1547 0.4956 1.0780 8 6 5.4379 0.7125 1.5040 9 1 6.0157 -0.1025 1.9143 10 6 5.9939 1.9813 1.4143 11 7 5.2879 2.9757 0.9194 12 14 7.7442 2.2772 1.9961 13 1 8.3180 1.0060 2.5058 14 1 8.5659 2.7710 0.8620 15 1 7.7401 3.2899 3.0823 16 6 3.9601 -1.6607 -0.0597 17 6 3.4686 -0.9438 -1.3208 18 7 2.0254 -0.6992 -1.1934 19 6 1.1722 -1.1088 -2.1531 20 8 -0.0009 -0.7935 -2.0986 21 6 1.6615 -1.9397 -3.2694 22 6 0.9392 -2.3038 -4.3701 23 7 1.7525 -3.0541 -5.1403 24 6 1.4156 -3.6672 -6.4275 25 6 1.3935 -2.5912 -7.5148 26 6 2.4638 -4.7253 -6.7782 27 6 0.0378 -4.3258 -6.3335 28 7 2.9812 -3.1389 -4.4701 29 7 2.8916 -2.4713 -3.3728 30 1 -0.3634 0.3931 0.9495 31 1 -0.3633 0.6258 -0.8152 32 1 -0.3634 -1.0188 -0.1344 33 1 1.6048 -1.7245 1.2924 34 1 1.7636 -0.1658 2.1376 35 1 3.6343 1.2285 0.7132 36 1 5.6765 3.8622 0.8564 37 1 5.0446 -1.7625 -0.0987 38 1 3.5034 -2.6487 -0.0015 39 1 3.6577 -1.5686 -2.1936 40 1 3.9918 0.0061 -1.4311 41 1 -0.0859 -2.0394 -4.5836 42 1 2.3751 -2.1220 -7.5817 43 1 1.1424 -3.0474 -8.4724 44 1 0.6468 -1.8375 -7.2649 45 1 2.4795 -5.4919 -6.0035 46 1 2.2129 -5.1818 -7.7357 47 1 3.4453 -4.2561 -6.8451 48 1 -0.7089 -3.5720 -6.0836 49 1 -0.2130 -4.7817 -7.2913 50 1 0.0536 -5.0925 -5.5589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044624241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:15 Heat of formation + Delta-G solvation = 96.444555 kcal Electronic energy + Delta-G solvation = -30410.331873 eV Core-core repulsion = 26476.186135 eV Total energy + Delta-G solvation = -3934.145739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.49 seconds Orbital eigenvalues (eV) -42.38486 -39.93776 -37.73422 -37.24648 -34.10483 -32.79304 -32.04425 -31.77877 -30.45356 -28.92560 -28.06141 -27.97181 -26.86074 -24.39259 -24.09339 -23.50807 -22.79807 -21.40708 -20.77629 -19.60383 -18.30364 -17.22425 -17.06719 -16.34132 -16.06117 -15.74412 -15.28138 -14.79908 -14.67841 -14.46396 -14.20480 -13.86929 -13.74345 -13.72212 -13.23903 -13.06839 -13.02766 -12.87033 -12.76162 -12.50359 -12.37943 -12.24703 -11.95261 -11.89734 -11.86286 -11.73074 -11.43916 -11.17272 -10.89016 -10.80227 -10.69169 -10.47294 -10.42878 -10.13842 -9.86337 -9.69453 -9.54129 -9.27565 -8.94791 -8.78264 -7.99417 -6.88107 -5.70698 -2.98550 1.09870 1.77718 1.82410 3.31159 3.47293 3.49815 3.53270 3.55172 3.84764 4.10363 4.18136 4.22574 4.61469 4.65106 4.80482 4.87366 4.95089 5.02651 5.06173 5.09856 5.22423 5.26383 5.33301 5.41810 5.42954 5.55581 5.57268 5.60653 5.73063 5.75352 5.77933 5.96640 5.99215 6.10801 6.15372 6.30001 6.30696 6.40647 6.56129 6.65002 6.71035 6.78584 6.87604 6.93656 7.04638 7.24854 7.77309 7.82137 8.01007 8.48119 8.49219 9.59369 10.17505 10.52522 11.52101 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.003012 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.925042 B = 9295.258205 C =10281.815513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.144 3.856 3 H 0.081 0.919 4 C -0.132 4.132 5 C 0.171 3.829 6 H 0.049 0.951 7 N -0.722 5.722 8 C -0.233 4.233 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.141 4.141 17 C 0.080 3.920 18 N -0.578 5.578 19 C 0.597 3.403 20 O -0.547 6.547 21 C -0.090 4.090 22 C 0.087 3.913 23 N -0.352 5.352 24 C 0.170 3.830 25 C -0.161 4.161 26 C -0.149 4.149 27 C -0.162 4.162 28 N -0.068 5.068 29 N -0.199 5.199 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.383 0.617 36 H 0.253 0.747 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.126 0.874 40 H 0.076 0.924 41 H 0.199 0.801 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 -15.491 -17.165 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.042 3.958 3 H 0.099 0.901 4 C -0.171 4.171 5 C 0.061 3.939 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.364 4.364 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.182 4.182 17 C -0.043 4.043 18 N -0.308 5.308 19 C 0.382 3.618 20 O -0.426 6.426 21 C -0.229 4.229 22 C -0.069 4.069 23 N -0.139 5.139 24 C 0.087 3.913 25 C -0.220 4.220 26 C -0.206 4.206 27 C -0.221 4.221 28 N -0.047 5.047 29 N -0.072 5.072 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.218 0.782 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.216 0.784 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.574 -15.919 -17.127 26.090 hybrid contribution 0.024 0.889 0.165 0.905 sum -11.549 -15.030 -16.962 25.436 Atomic orbital electron populations 1.22173 0.93340 1.03104 1.00603 1.21281 0.94714 0.96182 0.83628 0.90082 1.22228 0.97574 1.00115 0.97144 1.20240 0.90333 0.88099 0.95206 0.93333 1.42508 1.13855 1.04737 1.75322 1.19290 0.89943 0.94100 1.33113 0.91179 1.24713 0.98210 0.95946 1.02186 1.69668 1.36339 1.00539 1.51666 0.86154 0.84858 0.77579 0.77842 1.20623 1.22017 1.22051 1.22399 1.01221 0.97746 0.96868 1.22669 0.77782 1.02663 1.01164 1.48003 1.08362 1.55211 1.19234 1.16872 0.85180 0.79081 0.80620 1.90808 1.16838 1.58503 1.76489 1.21696 0.91686 1.09500 1.00060 1.23163 0.98731 0.93912 0.91116 1.50790 1.10522 1.35423 1.17145 1.21064 0.97164 0.94199 0.78859 1.22288 1.03863 0.98129 0.97672 1.21992 0.98542 0.97571 1.02531 1.22295 0.93899 1.01631 1.04235 1.81997 1.00979 1.19829 1.01848 1.74357 1.16616 1.05981 1.10228 0.93848 0.90854 0.92071 0.92185 0.90788 0.78193 0.93677 0.91056 0.93552 0.85706 0.90581 0.78439 0.91127 0.89733 0.91366 0.91222 0.90246 0.90538 0.91136 0.89496 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 7.62 37.16 0.28 -1.92 16 2 C 0.14 2.60 3.19 -67.60 -0.22 2.38 16 3 H 0.08 1.64 6.64 -51.93 -0.34 1.30 16 4 C -0.13 -2.32 5.07 -26.61 -0.13 -2.46 16 5 C 0.17 3.47 3.10 -67.89 -0.21 3.26 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.72 -17.85 4.31 -53.38 -0.23 -18.08 16 8 C -0.23 -6.42 9.93 -15.06 -0.15 -6.57 16 9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 10 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 12 Si 0.90 22.59 29.55 -169.99 -5.02 17.56 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 C -0.14 -2.66 5.78 -26.63 -0.15 -2.81 16 17 C 0.08 1.50 6.05 -3.72 -0.02 1.48 16 18 N -0.58 -10.36 2.97 -166.46 -0.49 -10.85 16 19 C 0.60 10.16 7.47 -12.47 -0.09 10.06 16 20 O -0.55 -9.67 12.49 5.28 0.07 -9.60 16 21 C -0.09 -1.35 6.74 -83.55 -0.56 -1.91 16 22 C 0.09 0.98 10.44 -16.84 -0.18 0.80 16 23 N -0.35 -3.62 3.44 -48.35 -0.17 -3.79 16 24 C 0.17 1.08 1.25 -131.82 -0.16 0.91 16 25 C -0.16 -0.83 8.74 37.16 0.32 -0.51 16 26 C -0.15 -0.87 8.11 37.16 0.30 -0.57 16 27 C -0.16 -0.71 8.30 37.16 0.31 -0.40 16 28 N -0.07 -0.93 12.91 60.35 0.78 -0.15 16 29 N -0.20 -3.12 8.73 32.85 0.29 -2.83 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.26 6.68 -51.93 -0.35 0.91 16 32 H 0.06 1.01 6.84 -51.93 -0.35 0.66 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.38 10.09 6.06 -40.82 -0.25 9.85 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.13 2.25 3.70 -116.90 -0.43 1.82 16 40 H 0.08 1.66 7.74 -51.93 -0.40 1.25 16 41 H 0.20 1.63 7.62 -52.49 -0.40 1.23 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 48 H 0.07 0.28 7.43 -51.93 -0.39 -0.11 16 49 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -32.57 388.75 -7.33 -39.90 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.37 Total: 8.24 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.76 Total: 1.24 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 0.90 Total: -63.19 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.57 -7.33 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044624241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.344 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.49 seconds