Wall clock time and date at job start Wed Apr 1 2020 00:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58544 * 2 1 4 4 C 1.53201 * 109.58071 * 120.27717 * 2 1 3 5 5 C 1.53041 * 109.30850 * 174.56693 * 4 2 1 6 6 H 1.09000 * 109.45776 * 178.62644 * 5 4 2 7 7 N 1.46501 * 109.46082 * 58.65519 * 5 4 2 8 8 C 1.36938 * 119.99688 * 154.97490 * 7 5 4 9 9 H 1.07997 * 120.00060 * 359.71775 * 8 7 5 10 10 C 1.38816 * 119.99812 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99885 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99840 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47082 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46759 * 119.99813 * 12 10 8 15 15 H 1.48503 * 109.46778 * 239.99621 * 12 10 8 16 16 C 1.53040 * 109.52796 * 298.64173 * 5 4 2 17 17 C 1.53165 * 109.32952 * 61.37326 * 16 5 4 18 18 N 1.46920 * 109.70732 * 239.63403 * 2 1 3 19 19 C 1.34784 * 120.63020 * 6.52221 * 18 2 1 20 20 O 1.21595 * 120.00019 * 6.83757 * 19 18 2 21 21 C 1.47516 * 120.00102 * 186.84567 * 19 18 2 22 22 C 1.36596 * 125.77176 * 187.14807 * 21 19 18 23 23 N 1.34813 * 106.83926 * 179.89866 * 22 21 19 24 24 C 1.46501 * 126.59406 * 180.13599 * 23 22 21 25 25 C 1.52996 * 109.47592 * 75.24013 * 24 23 22 26 26 C 1.53004 * 109.47090 * 195.24198 * 24 23 22 27 27 C 1.53002 * 109.46769 * 315.23746 * 24 23 22 28 28 N 1.40214 * 106.81222 * 0.35659 * 23 22 21 29 29 N 1.28755 * 108.36460 * 359.76982 * 28 23 22 30 30 H 1.09001 * 109.47331 * 292.49206 * 1 2 3 31 31 H 1.09001 * 109.46664 * 52.48870 * 1 2 3 32 32 H 1.09002 * 109.47255 * 172.48319 * 1 2 3 33 33 H 1.08994 * 109.49719 * 54.61680 * 4 2 1 34 34 H 1.08998 * 109.52287 * 294.53269 * 4 2 1 35 35 H 0.97003 * 119.99978 * 334.97173 * 7 5 4 36 36 H 0.97005 * 119.99974 * 180.02562 * 11 10 8 37 37 H 1.09002 * 109.49933 * 181.31611 * 16 5 4 38 38 H 1.08999 * 109.49527 * 301.40861 * 16 5 4 39 39 H 1.08999 * 109.59152 * 185.57183 * 17 16 5 40 40 H 1.08999 * 109.70669 * 65.21065 * 17 16 5 41 41 H 1.08002 * 126.57858 * 0.03667 * 22 21 19 42 42 H 1.09001 * 109.47157 * 59.99662 * 25 24 23 43 43 H 1.09000 * 109.47202 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.46870 * 300.00220 * 25 24 23 45 45 H 1.09002 * 109.46966 * 59.99745 * 26 24 23 46 46 H 1.09000 * 109.47188 * 179.97438 * 26 24 23 47 47 H 1.08997 * 109.47127 * 299.99981 * 26 24 23 48 48 H 1.09005 * 109.46692 * 60.00421 * 27 24 23 49 49 H 1.08999 * 109.46877 * 179.97438 * 27 24 23 50 50 H 1.08998 * 109.47415 * 299.99934 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7277 1.2465 5 6 3.5677 -0.8433 1.1732 6 1 3.9379 -1.3391 2.0705 7 7 4.1547 0.4956 1.0780 8 6 5.4379 0.7125 1.5040 9 1 6.0157 -0.1025 1.9143 10 6 5.9939 1.9813 1.4143 11 7 5.2879 2.9757 0.9194 12 14 7.7442 2.2772 1.9961 13 1 8.3180 1.0060 2.5058 14 1 8.5659 2.7710 0.8620 15 1 7.7401 3.2899 3.0823 16 6 3.9601 -1.6607 -0.0597 17 6 3.4686 -0.9438 -1.3208 18 7 2.0254 -0.6992 -1.1934 19 6 1.1722 -1.1088 -2.1531 20 8 -0.0009 -0.7935 -2.0986 21 6 1.6615 -1.9397 -3.2694 22 6 0.9392 -2.3038 -4.3701 23 7 1.7525 -3.0541 -5.1403 24 6 1.4156 -3.6672 -6.4275 25 6 1.3935 -2.5912 -7.5148 26 6 2.4638 -4.7253 -6.7782 27 6 0.0378 -4.3258 -6.3335 28 7 2.9812 -3.1389 -4.4701 29 7 2.8916 -2.4713 -3.3728 30 1 -0.3634 0.3931 0.9495 31 1 -0.3633 0.6258 -0.8152 32 1 -0.3634 -1.0188 -0.1344 33 1 1.6048 -1.7245 1.2924 34 1 1.7636 -0.1658 2.1376 35 1 3.6343 1.2285 0.7132 36 1 5.6765 3.8622 0.8564 37 1 5.0446 -1.7625 -0.0987 38 1 3.5034 -2.6487 -0.0015 39 1 3.6577 -1.5686 -2.1936 40 1 3.9918 0.0061 -1.4311 41 1 -0.0859 -2.0394 -4.5836 42 1 2.3751 -2.1220 -7.5817 43 1 1.1424 -3.0474 -8.4724 44 1 0.6468 -1.8375 -7.2649 45 1 2.4795 -5.4919 -6.0035 46 1 2.2129 -5.1818 -7.7357 47 1 3.4453 -4.2561 -6.8451 48 1 -0.7089 -3.5720 -6.0836 49 1 -0.2130 -4.7817 -7.2913 50 1 0.0536 -5.0925 -5.5589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044624241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:00 Heat of formation + Delta-G solvation = 75.868696 kcal Electronic energy + Delta-G solvation = -30411.224110 eV Core-core repulsion = 26476.186135 eV Total energy + Delta-G solvation = -3935.037975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 12.87 seconds Orbital eigenvalues (eV) -43.37799 -41.31318 -38.81055 -38.31753 -35.87052 -34.14656 -33.63853 -32.97284 -31.55939 -30.77987 -28.56143 -28.40816 -28.24122 -25.82215 -25.43954 -25.10786 -24.09009 -22.74946 -21.72608 -20.87553 -19.65333 -19.18887 -18.07857 -17.44291 -17.20257 -16.93611 -16.65583 -16.27745 -15.74373 -15.63831 -15.32197 -15.24179 -15.10449 -14.96181 -14.73490 -14.37455 -14.16389 -13.62984 -13.50464 -13.41035 -13.37188 -13.22016 -13.10723 -12.96435 -12.88526 -12.77260 -12.76137 -12.51547 -12.44348 -12.32382 -12.06061 -11.99052 -11.94010 -11.66038 -11.38277 -11.34515 -11.19259 -10.76029 -10.32227 -10.25297 -9.47572 -8.93927 -7.89571 -5.16636 0.17858 0.60694 1.05994 1.48257 1.48753 1.58537 1.98730 2.24201 2.59193 3.13128 3.25142 3.43970 3.61796 3.66505 3.78109 3.88744 3.91862 3.96542 4.07699 4.16822 4.20641 4.27806 4.44783 4.51514 4.52415 4.58610 4.61484 4.67566 4.68680 4.71821 4.80520 4.81262 4.87685 4.94604 5.07603 5.08613 5.14250 5.20550 5.21040 5.26814 5.27768 5.36595 5.42413 5.45532 5.57859 5.59142 5.80012 6.32624 6.46218 6.89095 7.17775 7.39042 8.15208 8.39240 9.34203 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.003012 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.925042 B = 9295.258205 C =10281.815513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.144 3.856 3 H 0.050 0.950 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.049 0.951 7 N -0.730 5.730 8 C -0.229 4.229 9 H 0.075 0.925 10 C -0.077 4.077 11 N -0.970 5.970 12 Si 0.968 3.032 13 H -0.266 1.266 14 H -0.298 1.298 15 H -0.296 1.296 16 C -0.132 4.132 17 C 0.091 3.909 18 N -0.585 5.585 19 C 0.597 3.403 20 O -0.555 6.555 21 C -0.121 4.121 22 C 0.109 3.891 23 N -0.336 5.336 24 C 0.158 3.842 25 C -0.159 4.159 26 C -0.148 4.148 27 C -0.159 4.159 28 N -0.085 5.085 29 N -0.228 5.228 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.036 0.964 41 H 0.232 0.768 42 H 0.051 0.949 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.100 -17.641 -18.637 29.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.041 3.959 3 H 0.068 0.932 4 C -0.159 4.159 5 C 0.057 3.943 6 H 0.067 0.933 7 N -0.371 5.371 8 C -0.361 4.361 9 H 0.093 0.907 10 C -0.269 4.269 11 N -0.622 5.622 12 Si 0.798 3.202 13 H -0.191 1.191 14 H -0.225 1.225 15 H -0.223 1.223 16 C -0.172 4.172 17 C -0.032 4.032 18 N -0.315 5.315 19 C 0.385 3.615 20 O -0.434 6.434 21 C -0.260 4.260 22 C -0.049 4.049 23 N -0.123 5.123 24 C 0.078 3.922 25 C -0.217 4.217 26 C -0.205 4.205 27 C -0.217 4.217 28 N -0.064 5.064 29 N -0.100 5.100 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.155 0.845 40 H 0.054 0.946 41 H 0.248 0.752 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.129 0.871 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.133 0.867 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.107 -18.142 -18.615 29.111 hybrid contribution 0.411 1.444 0.472 1.574 sum -12.697 -16.698 -18.144 27.735 Atomic orbital electron populations 1.22022 0.91641 1.02973 1.01101 1.21216 0.95874 0.94705 0.84071 0.93170 1.22119 0.95449 1.01325 0.97032 1.20461 0.92062 0.86117 0.95688 0.93330 1.42657 1.13154 1.06240 1.75048 1.19645 0.90957 0.94042 1.31427 0.90694 1.25471 1.01978 0.96011 1.03465 1.69828 1.37941 1.00665 1.53745 0.85141 0.80517 0.77668 0.76877 1.19073 1.22525 1.22335 1.22258 1.00482 0.98428 0.96063 1.22472 0.78239 1.00682 1.01803 1.47980 1.07986 1.55789 1.19760 1.17099 0.84961 0.78828 0.80647 1.90792 1.16980 1.58897 1.76769 1.21583 0.92484 1.11017 1.00957 1.23574 0.99516 0.92196 0.89582 1.51183 1.09179 1.34158 1.17730 1.21613 0.98611 0.94740 0.77268 1.22318 1.02981 0.97870 0.98510 1.22026 0.97630 0.97066 1.03820 1.22338 0.92272 1.01506 1.05604 1.81909 1.02691 1.20108 1.01698 1.74181 1.17419 1.06994 1.11410 0.92216 0.91909 0.91919 0.89923 0.90590 0.79417 0.94321 0.92412 0.91414 0.84512 0.94575 0.75209 0.92958 0.86714 0.91030 0.92350 0.87087 0.92296 0.90314 0.86662 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 7.62 71.98 0.55 -3.27 16 2 C 0.14 5.24 3.19 44.98 0.14 5.38 16 3 H 0.05 2.13 6.64 -2.39 -0.02 2.12 16 4 C -0.12 -4.18 5.07 30.68 0.16 -4.02 16 5 C 0.17 6.72 3.10 45.02 0.14 6.86 16 6 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 7 N -0.73 -37.06 4.31 -322.81 -1.39 -38.46 16 8 C -0.23 -12.78 9.93 84.03 0.83 -11.95 16 9 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 10 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 11 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 12 Si 0.97 47.26 29.55 68.60 2.03 49.29 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 15 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 16 C -0.13 -4.98 5.78 30.66 0.18 -4.80 16 17 C 0.09 3.54 6.05 86.35 0.52 4.06 16 18 N -0.58 -21.21 2.97 -798.81 -2.37 -23.59 16 19 C 0.60 20.11 7.47 86.69 0.65 20.76 16 20 O -0.55 -19.05 12.49 -4.02 -0.05 -19.10 16 21 C -0.12 -3.53 6.74 40.81 0.27 -3.25 16 22 C 0.11 2.24 10.44 83.85 0.88 3.11 16 23 N -0.34 -6.37 3.44 -306.89 -1.06 -7.42 16 24 C 0.16 1.60 1.25 3.60 0.00 1.60 16 25 C -0.16 -1.18 8.74 71.98 0.63 -0.55 16 26 C -0.15 -1.44 8.11 71.98 0.58 -0.85 16 27 C -0.16 -0.80 8.30 71.98 0.60 -0.20 16 28 N -0.09 -2.31 12.91 37.02 0.48 -1.83 16 29 N -0.23 -7.14 8.73 -50.00 -0.44 -7.58 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.13 6.68 -2.39 -0.02 2.11 16 32 H 0.06 1.98 6.84 -2.39 -0.02 1.96 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.37 20.48 6.06 -92.71 -0.56 19.92 16 36 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.14 5.07 3.70 -86.45 -0.32 4.75 16 40 H 0.04 1.67 7.74 -2.39 -0.02 1.65 16 41 H 0.23 3.03 7.62 -2.91 -0.02 3.00 16 42 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.06 0.79 8.06 -2.39 -0.02 0.77 16 48 H 0.08 0.30 7.43 -2.38 -0.02 0.28 16 49 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 50 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -72.62 388.75 4.15 -68.47 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.07 Total: 31.61 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.60 Total: 8.83 kcal Atomic # 7 Polarization: -134.61 SS G_CDS: -4.50 Total: -139.11 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -72.62 4.15 -68.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044624241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.338 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.87 seconds