Wall clock time and date at job start Wed Apr 1 2020 00:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.70591 * 2 1 4 4 C 1.52765 * 109.50724 * 239.87653 * 2 1 3 5 5 C 1.53040 * 109.38145 * 185.70952 * 4 2 1 6 6 H 1.08998 * 109.45817 * 181.26951 * 5 4 2 7 7 N 1.46508 * 109.45860 * 301.22368 * 5 4 2 8 8 C 1.36937 * 119.99532 * 205.06649 * 7 5 4 9 9 H 1.07992 * 120.00560 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99784 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00198 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00263 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47360 * 90.00078 * 12 10 8 14 14 H 1.48500 * 109.47095 * 210.00460 * 12 10 8 15 15 H 1.48501 * 109.46963 * 330.00123 * 12 10 8 16 16 C 1.53035 * 109.53834 * 61.24287 * 5 4 2 17 17 C 1.53192 * 109.31527 * 298.63485 * 16 5 4 18 18 N 1.46928 * 108.77674 * 54.63314 * 17 16 5 19 19 C 1.34771 * 120.63240 * 126.36629 * 18 17 16 20 20 O 1.21552 * 120.00318 * 187.59991 * 19 18 17 21 21 C 1.47874 * 120.00146 * 7.60027 * 19 18 17 22 22 N 1.34556 * 126.04294 * 7.33968 * 21 19 18 23 23 C 1.30871 * 107.26617 * 179.97438 * 22 21 19 24 24 N 1.34591 * 107.62590 * 0.02562 * 23 22 21 25 25 C 1.46496 * 125.74770 * 180.02562 * 24 23 22 26 26 C 1.52996 * 109.47025 * 74.95003 * 25 24 23 27 27 C 1.52992 * 109.47181 * 194.95126 * 25 24 23 28 28 C 1.53002 * 109.46965 * 314.95116 * 25 24 23 29 29 N 1.28845 * 108.50205 * 359.97438 * 24 23 22 30 30 H 1.09002 * 109.47056 * 299.96076 * 1 2 3 31 31 H 1.09009 * 109.46928 * 59.95457 * 1 2 3 32 32 H 1.08997 * 109.47773 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.56065 * 65.67593 * 4 2 1 34 34 H 1.08999 * 109.38971 * 305.63693 * 4 2 1 35 35 H 0.96999 * 120.00301 * 25.06617 * 7 5 4 36 36 H 0.96991 * 120.00655 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49690 * 178.68549 * 16 5 4 38 38 H 1.09002 * 109.49681 * 58.58749 * 16 5 4 39 39 H 1.09003 * 109.58598 * 294.85121 * 17 16 5 40 40 H 1.08997 * 109.58713 * 174.42193 * 17 16 5 41 41 H 1.07998 * 126.18445 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47317 * 60.00249 * 26 25 24 43 43 H 1.09004 * 109.47367 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47168 * 300.00064 * 26 25 24 45 45 H 1.09007 * 109.47558 * 60.00128 * 27 25 24 46 46 H 1.08994 * 109.47747 * 180.02562 * 27 25 24 47 47 H 1.09001 * 109.47219 * 300.00484 * 27 25 24 48 48 H 1.08996 * 109.47450 * 60.00410 * 28 25 24 49 49 H 1.09004 * 109.46780 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47442 * 299.99911 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7227 -1.2455 5 6 3.5638 -0.8464 -1.1726 6 1 3.9312 -1.3418 -2.0712 7 7 4.1578 0.4893 -1.0744 8 6 5.4418 0.7005 -1.5008 9 1 6.0164 -0.1173 -1.9098 10 6 6.0045 1.9661 -1.4083 11 7 5.3040 2.9630 -0.9103 12 14 7.7558 2.2546 -1.9906 13 1 7.7438 2.6363 -3.4256 14 1 8.3691 3.3467 -1.1929 15 1 8.5467 1.0099 -1.8161 16 6 3.9522 -1.6688 0.0582 17 6 3.4643 -0.9521 1.3211 18 7 2.0224 -0.6996 1.1945 19 6 1.1672 -1.1070 2.1532 20 8 -0.0320 -1.0173 1.9759 21 6 1.6876 -1.6630 3.4207 22 7 2.9776 -1.6909 3.8025 23 6 3.0220 -2.2608 4.9797 24 7 1.7617 -2.5846 5.3236 25 6 1.3563 -3.2424 6.5682 26 6 1.4189 -2.2373 7.7201 27 6 -0.0740 -3.7663 6.4257 28 6 2.3008 -4.4104 6.8588 29 7 0.9717 -2.2175 4.3742 30 1 -0.3633 0.5132 0.8904 31 1 -0.3633 0.5146 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7632 -0.1567 -2.1350 34 1 1.5963 -1.7170 -1.2942 35 1 3.6415 1.2239 -0.7074 36 1 5.6972 3.8472 -0.8452 37 1 5.0362 -1.7763 0.0967 38 1 3.4903 -2.6543 -0.0022 39 1 3.9928 -0.0051 1.4310 40 1 3.6502 -1.5799 2.1925 41 1 3.9096 -2.4397 5.5684 42 1 0.7460 -1.4051 7.5131 43 1 1.1168 -2.7265 8.6461 44 1 2.4379 -1.8640 7.8216 45 1 -0.1186 -4.4825 5.6051 46 1 -0.3758 -4.2554 7.3518 47 1 -0.7469 -2.9342 6.2186 48 1 3.3198 -4.0372 6.9604 49 1 1.9995 -4.8996 7.7851 50 1 2.2563 -5.1265 6.0382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044744639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:54 Heat of formation + Delta-G solvation = 95.202873 kcal Electronic energy + Delta-G solvation = -30478.976079 eV Core-core repulsion = 26544.776497 eV Total energy + Delta-G solvation = -3934.199582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -43.56722 -40.01968 -37.70563 -37.19651 -34.14084 -33.08448 -32.13588 -31.79299 -30.78610 -28.96255 -28.06345 -27.94548 -26.91245 -24.86154 -23.84692 -23.41733 -22.86087 -21.59575 -20.25778 -19.94081 -18.48289 -17.24502 -17.06590 -16.66696 -16.26770 -15.85634 -15.20733 -14.89680 -14.65022 -14.52620 -14.18012 -13.90228 -13.82796 -13.59900 -13.22213 -13.06779 -12.97917 -12.85178 -12.83782 -12.48431 -12.34032 -12.15054 -11.94237 -11.84836 -11.80808 -11.52825 -11.27516 -11.09246 -10.85933 -10.72476 -10.62347 -10.47855 -10.41736 -10.16716 -9.84387 -9.60627 -9.53208 -9.49080 -8.92860 -8.78877 -7.99150 -6.88797 -5.70844 -2.98980 1.46407 1.99077 2.12915 3.20021 3.46847 3.52122 3.53630 3.58785 3.87875 4.11405 4.14890 4.23467 4.57637 4.64337 4.71607 4.87624 5.00078 5.06127 5.12181 5.18643 5.26676 5.38624 5.40692 5.43482 5.54294 5.58560 5.71477 5.73941 5.76158 5.88946 5.96231 5.99900 6.09181 6.14334 6.26794 6.32108 6.39129 6.43125 6.58375 6.63269 6.71857 6.81047 6.88598 6.93417 7.06855 7.25248 7.75862 7.80179 8.04460 8.47766 8.51673 9.58905 10.17005 10.52102 11.51835 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.003060 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.074217 B = 9149.135819 C =10200.673856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.147 3.853 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.172 3.828 6 H 0.049 0.951 7 N -0.721 5.721 8 C -0.235 4.235 9 H 0.069 0.931 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.904 3.096 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.283 1.283 16 C -0.147 4.147 17 C 0.089 3.911 18 N -0.575 5.575 19 C 0.608 3.392 20 O -0.527 6.527 21 C 0.148 3.852 22 N -0.472 5.472 23 C 0.183 3.817 24 N -0.295 5.295 25 C 0.167 3.833 26 C -0.160 4.160 27 C -0.148 4.148 28 C -0.160 4.160 29 N -0.252 5.252 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.220 0.780 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -15.505 18.186 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.062 3.938 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.366 4.366 9 H 0.087 0.913 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.219 1.219 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.188 4.188 17 C -0.033 4.033 18 N -0.306 5.306 19 C 0.392 3.608 20 O -0.403 6.403 21 C -0.132 4.132 22 N -0.198 5.198 23 C -0.111 4.111 24 N -0.092 5.092 25 C 0.085 3.915 26 C -0.218 4.218 27 C -0.206 4.206 28 C -0.218 4.218 29 N -0.090 5.090 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.236 0.764 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.914 -15.380 17.774 25.138 hybrid contribution 1.376 0.420 0.106 1.443 sum -7.537 -14.960 17.880 24.501 Atomic orbital electron populations 1.22254 0.93217 1.02955 1.00948 1.21235 0.94847 0.96018 0.83472 0.89907 1.22171 0.97527 1.00263 0.97201 1.20221 0.90321 0.88139 0.95119 0.93332 1.42497 1.13805 1.04886 1.75180 1.19231 0.89888 0.94163 1.33305 0.91262 1.24711 0.98196 0.95964 1.02099 1.69654 1.36501 1.00621 1.51370 0.86227 0.84830 0.77314 0.78032 1.21906 1.21928 1.20850 1.22499 1.01207 0.97724 0.97380 1.22557 0.77665 1.02992 1.00067 1.47914 1.08566 1.55203 1.18961 1.16442 0.85432 0.78354 0.80617 1.90837 1.14792 1.55766 1.78879 1.24047 0.86799 1.04530 0.97788 1.71312 1.19109 1.19549 1.09809 1.26516 0.90618 0.99391 0.94618 1.47761 1.05459 1.40988 1.14995 1.21124 0.97817 0.92907 0.79645 1.22266 1.03665 0.99080 0.96816 1.21985 0.92895 1.02652 1.03021 1.22258 0.99129 0.96727 1.03699 1.74263 1.21787 1.15142 0.97818 0.91062 0.93831 0.91627 0.90667 0.92109 0.78165 0.93604 0.90983 0.93803 0.90198 0.86042 0.76417 0.91224 0.89691 0.91281 0.91294 0.90442 0.90526 0.91067 0.89428 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.59 37.16 0.28 -2.05 16 2 C 0.15 2.70 3.18 -67.82 -0.22 2.48 16 3 H 0.08 1.69 6.64 -51.93 -0.34 1.34 16 4 C -0.13 -2.36 5.05 -26.83 -0.14 -2.50 16 5 C 0.17 3.47 3.10 -67.89 -0.21 3.26 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -17.73 4.31 -53.38 -0.23 -17.96 16 8 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 12 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 C -0.15 -2.72 5.78 -26.61 -0.15 -2.87 16 17 C 0.09 1.66 5.83 -3.71 -0.02 1.63 16 18 N -0.57 -10.63 2.98 -166.56 -0.50 -11.12 16 19 C 0.61 11.39 7.61 -12.32 -0.09 11.30 16 20 O -0.53 -10.58 12.50 5.32 0.07 -10.51 16 21 C 0.15 2.49 7.64 -156.35 -1.19 1.29 16 22 N -0.47 -7.06 7.88 -12.36 -0.10 -7.16 16 23 C 0.18 1.96 11.71 -90.47 -1.06 0.90 16 24 N -0.30 -3.17 3.17 -49.84 -0.16 -3.33 16 25 C 0.17 1.10 1.23 -131.83 -0.16 0.94 16 26 C -0.16 -0.82 8.72 37.16 0.32 -0.50 16 27 C -0.15 -1.00 8.04 37.15 0.30 -0.70 16 28 C -0.16 -0.64 8.28 37.16 0.31 -0.33 16 29 N -0.25 -3.77 11.10 32.08 0.36 -3.41 16 30 H 0.07 1.30 6.53 -51.93 -0.34 0.96 16 31 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.06 1.15 6.95 -51.93 -0.36 0.79 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.38 10.07 6.07 -40.82 -0.25 9.83 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.73 7.74 -51.93 -0.40 1.33 16 40 H 0.12 2.13 4.17 -59.09 -0.25 1.88 16 41 H 0.22 1.30 7.53 -52.49 -0.40 0.90 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16 48 H 0.07 0.21 7.34 -51.93 -0.38 -0.17 16 49 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 387.96 15.07 5.85 5.85 Total: -1.00 -33.81 387.96 -9.46 -43.27 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.17 Total: 8.56 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -2.28 Total: 5.80 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: 0.10 Total: -70.32 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.81 -9.46 -43.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.474 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds