Wall clock time and date at job start Wed Apr 1 2020 00:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.70591 * 2 1 4 4 C 1.52765 * 109.50724 * 239.87653 * 2 1 3 5 5 C 1.53040 * 109.38145 * 185.70952 * 4 2 1 6 6 H 1.08998 * 109.45817 * 181.26951 * 5 4 2 7 7 N 1.46508 * 109.45860 * 301.22368 * 5 4 2 8 8 C 1.36937 * 119.99532 * 205.06649 * 7 5 4 9 9 H 1.07992 * 120.00560 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99784 * 179.97438 * 8 7 5 11 11 N 1.31623 * 120.00198 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00263 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47360 * 90.00078 * 12 10 8 14 14 H 1.48500 * 109.47095 * 210.00460 * 12 10 8 15 15 H 1.48501 * 109.46963 * 330.00123 * 12 10 8 16 16 C 1.53035 * 109.53834 * 61.24287 * 5 4 2 17 17 C 1.53192 * 109.31527 * 298.63485 * 16 5 4 18 18 N 1.46928 * 108.77674 * 54.63314 * 17 16 5 19 19 C 1.34771 * 120.63240 * 126.36629 * 18 17 16 20 20 O 1.21552 * 120.00318 * 187.59991 * 19 18 17 21 21 C 1.47874 * 120.00146 * 7.60027 * 19 18 17 22 22 N 1.34556 * 126.04294 * 7.33968 * 21 19 18 23 23 C 1.30871 * 107.26617 * 179.97438 * 22 21 19 24 24 N 1.34591 * 107.62590 * 0.02562 * 23 22 21 25 25 C 1.46496 * 125.74770 * 180.02562 * 24 23 22 26 26 C 1.52996 * 109.47025 * 74.95003 * 25 24 23 27 27 C 1.52992 * 109.47181 * 194.95126 * 25 24 23 28 28 C 1.53002 * 109.46965 * 314.95116 * 25 24 23 29 29 N 1.28845 * 108.50205 * 359.97438 * 24 23 22 30 30 H 1.09002 * 109.47056 * 299.96076 * 1 2 3 31 31 H 1.09009 * 109.46928 * 59.95457 * 1 2 3 32 32 H 1.08997 * 109.47773 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.56065 * 65.67593 * 4 2 1 34 34 H 1.08999 * 109.38971 * 305.63693 * 4 2 1 35 35 H 0.96999 * 120.00301 * 25.06617 * 7 5 4 36 36 H 0.96991 * 120.00655 * 179.97438 * 11 10 8 37 37 H 1.09005 * 109.49690 * 178.68549 * 16 5 4 38 38 H 1.09002 * 109.49681 * 58.58749 * 16 5 4 39 39 H 1.09003 * 109.58598 * 294.85121 * 17 16 5 40 40 H 1.08997 * 109.58713 * 174.42193 * 17 16 5 41 41 H 1.07998 * 126.18445 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47317 * 60.00249 * 26 25 24 43 43 H 1.09004 * 109.47367 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47168 * 300.00064 * 26 25 24 45 45 H 1.09007 * 109.47558 * 60.00128 * 27 25 24 46 46 H 1.08994 * 109.47747 * 180.02562 * 27 25 24 47 47 H 1.09001 * 109.47219 * 300.00484 * 27 25 24 48 48 H 1.08996 * 109.47450 * 60.00410 * 28 25 24 49 49 H 1.09004 * 109.46780 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47442 * 299.99911 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7227 -1.2455 5 6 3.5638 -0.8464 -1.1726 6 1 3.9312 -1.3418 -2.0712 7 7 4.1578 0.4893 -1.0744 8 6 5.4418 0.7005 -1.5008 9 1 6.0164 -0.1173 -1.9098 10 6 6.0045 1.9661 -1.4083 11 7 5.3040 2.9630 -0.9103 12 14 7.7558 2.2546 -1.9906 13 1 7.7438 2.6363 -3.4256 14 1 8.3691 3.3467 -1.1929 15 1 8.5467 1.0099 -1.8161 16 6 3.9522 -1.6688 0.0582 17 6 3.4643 -0.9521 1.3211 18 7 2.0224 -0.6996 1.1945 19 6 1.1672 -1.1070 2.1532 20 8 -0.0320 -1.0173 1.9759 21 6 1.6876 -1.6630 3.4207 22 7 2.9776 -1.6909 3.8025 23 6 3.0220 -2.2608 4.9797 24 7 1.7617 -2.5846 5.3236 25 6 1.3563 -3.2424 6.5682 26 6 1.4189 -2.2373 7.7201 27 6 -0.0740 -3.7663 6.4257 28 6 2.3008 -4.4104 6.8588 29 7 0.9717 -2.2175 4.3742 30 1 -0.3633 0.5132 0.8904 31 1 -0.3633 0.5146 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7632 -0.1567 -2.1350 34 1 1.5963 -1.7170 -1.2942 35 1 3.6415 1.2239 -0.7074 36 1 5.6972 3.8472 -0.8452 37 1 5.0362 -1.7763 0.0967 38 1 3.4903 -2.6543 -0.0022 39 1 3.9928 -0.0051 1.4310 40 1 3.6502 -1.5799 2.1925 41 1 3.9096 -2.4397 5.5684 42 1 0.7460 -1.4051 7.5131 43 1 1.1168 -2.7265 8.6461 44 1 2.4379 -1.8640 7.8216 45 1 -0.1186 -4.4825 5.6051 46 1 -0.3758 -4.2554 7.3518 47 1 -0.7469 -2.9342 6.2186 48 1 3.3198 -4.0372 6.9604 49 1 1.9995 -4.8996 7.7851 50 1 2.2563 -5.1265 6.0382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044744639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:27 Heat of formation + Delta-G solvation = 75.432994 kcal Electronic energy + Delta-G solvation = -30479.833366 eV Core-core repulsion = 26544.776497 eV Total energy + Delta-G solvation = -3935.056868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 38.59 seconds Orbital eigenvalues (eV) -44.55762 -41.48086 -38.87324 -38.23240 -35.90203 -34.35738 -33.63893 -33.32048 -31.81419 -30.82295 -28.60492 -28.39792 -28.29239 -26.12272 -25.63221 -24.96456 -23.94664 -22.94252 -21.35365 -21.06189 -19.93296 -19.17983 -18.12844 -17.65508 -17.47313 -17.17710 -16.70881 -16.23643 -15.92885 -15.64834 -15.52358 -15.11697 -14.93610 -14.92614 -14.76397 -14.46922 -14.13310 -13.79439 -13.44965 -13.38430 -13.31511 -13.21174 -13.13182 -12.89934 -12.80604 -12.76050 -12.64429 -12.51757 -12.35528 -12.11014 -12.08708 -11.96937 -11.96095 -11.63095 -11.43035 -11.37835 -11.07155 -10.67450 -10.51375 -10.32283 -9.52504 -8.92413 -7.87020 -5.14524 0.34021 1.09730 1.18708 1.50493 1.51654 1.59880 1.90986 2.25313 2.61343 3.04058 3.25366 3.46288 3.66617 3.68588 3.78838 3.84962 3.88671 3.96414 4.06590 4.13594 4.38177 4.44244 4.51139 4.56219 4.59283 4.62012 4.66341 4.69712 4.78735 4.80640 4.83477 4.85053 4.92652 5.03263 5.08504 5.11518 5.14482 5.20464 5.22266 5.23820 5.29524 5.37450 5.40516 5.52142 5.60102 5.67941 5.86606 6.34377 6.36985 6.89291 7.16916 7.41014 8.16771 8.40985 9.36567 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.003060 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.074217 B = 9149.135819 C =10200.673856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.146 3.854 3 H 0.056 0.944 4 C -0.121 4.121 5 C 0.166 3.834 6 H 0.051 0.949 7 N -0.730 5.730 8 C -0.229 4.229 9 H 0.077 0.923 10 C -0.077 4.077 11 N -0.971 5.971 12 Si 0.969 3.031 13 H -0.291 1.291 14 H -0.300 1.300 15 H -0.268 1.268 16 C -0.137 4.137 17 C 0.100 3.900 18 N -0.577 5.577 19 C 0.604 3.396 20 O -0.549 6.549 21 C 0.117 3.883 22 N -0.504 5.504 23 C 0.198 3.802 24 N -0.285 5.285 25 C 0.156 3.844 26 C -0.157 4.157 27 C -0.147 4.147 28 C -0.155 4.155 29 N -0.266 5.266 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.372 0.628 36 H 0.248 0.752 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.139 0.861 41 H 0.268 0.732 42 H 0.044 0.956 43 H 0.115 0.885 44 H 0.079 0.921 45 H 0.052 0.948 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.088 0.912 49 H 0.115 0.885 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -18.061 20.021 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.044 3.956 3 H 0.074 0.926 4 C -0.160 4.160 5 C 0.057 3.943 6 H 0.069 0.931 7 N -0.371 5.371 8 C -0.361 4.361 9 H 0.095 0.905 10 C -0.269 4.269 11 N -0.622 5.622 12 Si 0.799 3.201 13 H -0.219 1.219 14 H -0.227 1.227 15 H -0.193 1.193 16 C -0.178 4.178 17 C -0.022 4.022 18 N -0.308 5.308 19 C 0.389 3.611 20 O -0.426 6.426 21 C -0.162 4.162 22 N -0.230 5.230 23 C -0.095 4.095 24 N -0.082 5.082 25 C 0.076 3.924 26 C -0.215 4.215 27 C -0.205 4.205 28 C -0.213 4.213 29 N -0.107 5.107 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.205 0.795 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.156 0.844 41 H 0.284 0.716 42 H 0.064 0.936 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.129 0.871 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.133 0.867 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.990 -18.001 19.618 27.798 hybrid contribution 1.006 1.106 -0.303 1.525 sum -6.984 -16.895 19.315 26.595 Atomic orbital electron populations 1.22080 0.92066 1.02726 1.01009 1.21175 0.95619 0.94812 0.84039 0.92624 1.22062 0.95804 1.01305 0.96846 1.20445 0.91657 0.86278 0.95871 0.93118 1.42650 1.13159 1.06343 1.74926 1.19608 0.90825 0.94146 1.31533 0.90542 1.25478 1.02007 0.96019 1.03382 1.69823 1.38115 1.00738 1.53553 0.85199 0.80598 0.77244 0.77083 1.21857 1.22716 1.19324 1.22367 1.00865 0.98360 0.96215 1.22421 0.77434 1.01310 1.00991 1.47900 1.08466 1.55316 1.19143 1.16720 0.85207 0.77918 0.81236 1.90809 1.15546 1.56675 1.79551 1.23626 0.87899 1.06807 0.97829 1.71095 1.18485 1.21245 1.12156 1.27313 0.91779 0.96965 0.93485 1.48209 1.05220 1.39692 1.15053 1.21675 0.98363 0.94125 0.78218 1.22293 1.03833 0.98121 0.97210 1.22005 0.92862 1.01493 1.04123 1.22302 0.99327 0.95193 1.04510 1.74188 1.22980 1.15081 0.98418 0.92669 0.92047 0.91871 0.90425 0.90039 0.79480 0.94350 0.91699 0.91501 0.93954 0.84435 0.71618 0.93645 0.86677 0.90218 0.92858 0.87121 0.93077 0.89328 0.86692 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.22 7.59 71.98 0.55 -3.67 16 2 C 0.15 5.51 3.18 44.83 0.14 5.65 16 3 H 0.06 2.40 6.64 -2.39 -0.02 2.39 16 4 C -0.12 -4.27 5.05 30.53 0.15 -4.12 16 5 C 0.17 6.64 3.10 45.02 0.14 6.78 16 6 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 7 N -0.73 -36.52 4.31 -322.81 -1.39 -37.91 16 8 C -0.23 -12.57 9.93 84.03 0.83 -11.74 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 11 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 12 Si 0.97 46.45 29.55 68.60 2.03 48.47 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 16 C -0.14 -5.00 5.78 30.67 0.18 -4.82 16 17 C 0.10 3.80 5.83 86.36 0.50 4.30 16 18 N -0.58 -21.85 2.98 -799.16 -2.38 -24.23 16 19 C 0.60 23.23 7.61 86.80 0.66 23.89 16 20 O -0.55 -22.69 12.50 -3.88 -0.05 -22.74 16 21 C 0.12 3.96 7.64 137.13 1.05 5.01 16 22 N -0.50 -14.71 7.88 -193.02 -1.52 -16.23 16 23 C 0.20 3.78 11.71 180.30 2.11 5.89 16 24 N -0.29 -5.68 3.17 -311.60 -0.99 -6.66 16 25 C 0.16 1.65 1.23 3.60 0.00 1.66 16 26 C -0.16 -1.14 8.72 71.98 0.63 -0.52 16 27 C -0.15 -1.78 8.04 71.98 0.58 -1.20 16 28 C -0.16 -0.62 8.28 71.98 0.60 -0.02 16 29 N -0.27 -7.96 11.10 -52.43 -0.58 -8.54 16 30 H 0.05 2.09 6.53 -2.39 -0.02 2.07 16 31 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.06 2.22 6.95 -2.39 -0.02 2.20 16 33 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.37 20.31 6.07 -92.71 -0.56 19.74 16 36 H 0.25 14.98 8.31 -92.72 -0.77 14.20 16 37 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.91 7.74 -2.39 -0.02 1.89 16 40 H 0.14 4.83 4.17 -16.51 -0.07 4.76 16 41 H 0.27 2.00 7.53 -2.91 -0.02 1.98 16 42 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.05 0.88 8.02 -2.39 -0.02 0.86 16 48 H 0.09 0.08 7.34 -2.39 -0.02 0.06 16 49 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 50 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -76.69 387.96 4.31 -72.38 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.32 Total: 32.08 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 8.59 Total: 23.14 kcal Atomic # 7 Polarization: -146.76 SS G_CDS: -6.58 Total: -153.34 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.69 4.31 -72.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.815 kcal (2) G-P(sol) polarization free energy of solvation -76.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.59 seconds