Wall clock time and date at job start Wed Apr 1 2020 00:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.70224 * 2 1 4 4 C 1.53190 * 109.58903 * 120.35607 * 2 1 3 5 5 C 1.53041 * 109.31323 * 174.42224 * 4 2 1 6 6 H 1.08994 * 109.46305 * 178.61472 * 5 4 2 7 7 N 1.46504 * 109.45892 * 58.65759 * 5 4 2 8 8 C 1.36935 * 120.00174 * 155.00117 * 7 5 4 9 9 H 1.08005 * 120.00192 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00247 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99664 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00166 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47192 * 359.97438 * 12 10 8 14 14 H 1.48490 * 109.47391 * 119.99812 * 12 10 8 15 15 H 1.48500 * 109.46689 * 239.99875 * 12 10 8 16 16 C 1.53035 * 109.54035 * 298.63716 * 5 4 2 17 17 C 1.52769 * 109.38334 * 61.23930 * 16 5 4 18 18 N 1.46927 * 109.00663 * 305.58696 * 17 16 5 19 19 C 1.34767 * 120.63247 * 233.58318 * 18 17 16 20 20 O 1.21551 * 120.00165 * 184.89458 * 19 18 17 21 21 C 1.47873 * 119.99953 * 4.62443 * 19 18 17 22 22 N 1.34551 * 126.04638 * 352.68903 * 21 19 18 23 23 C 1.30870 * 107.26856 * 179.89544 * 22 21 19 24 24 N 1.34581 * 107.62425 * 0.36702 * 23 22 21 25 25 C 1.46505 * 125.75027 * 179.74629 * 24 23 22 26 26 C 1.53001 * 109.47170 * 74.99994 * 25 24 23 27 27 C 1.53002 * 109.47355 * 194.99741 * 25 24 23 28 28 C 1.52995 * 109.47065 * 315.00129 * 25 24 23 29 29 N 1.28853 * 108.50651 * 359.76632 * 24 23 22 30 30 H 1.09007 * 109.46965 * 173.11382 * 1 2 3 31 31 H 1.09001 * 109.46693 * 293.10749 * 1 2 3 32 32 H 1.08998 * 109.47145 * 53.11132 * 1 2 3 33 33 H 1.08995 * 109.49927 * 294.37633 * 4 2 1 34 34 H 1.09000 * 109.49979 * 54.44413 * 4 2 1 35 35 H 0.97001 * 119.99706 * 334.99721 * 7 5 4 36 36 H 0.97006 * 119.99751 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.50305 * 181.31473 * 16 5 4 38 38 H 1.08994 * 109.49822 * 301.41426 * 16 5 4 39 39 H 1.09005 * 109.50782 * 185.70767 * 17 16 5 40 40 H 1.09001 * 109.43107 * 65.42605 * 17 16 5 41 41 H 1.08003 * 126.18714 * 180.13726 * 23 22 21 42 42 H 1.08999 * 109.47367 * 59.99792 * 26 25 24 43 43 H 1.08999 * 109.47536 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.47103 * 300.00034 * 26 25 24 45 45 H 1.08998 * 109.46690 * 60.00308 * 27 25 24 46 46 H 1.08997 * 109.47036 * 179.97438 * 27 25 24 47 47 H 1.08994 * 109.47112 * 300.00460 * 27 25 24 48 48 H 1.09004 * 109.47242 * 59.99945 * 28 25 24 49 49 H 1.08997 * 109.47509 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47301 * 299.99889 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1700 6 1 3.9379 -1.3448 2.0667 7 7 4.1570 0.4899 1.0749 8 6 5.4414 0.7039 1.4989 9 1 6.0197 -0.1134 1.9038 10 6 5.9998 1.9716 1.4092 11 7 5.2949 2.9678 0.9162 12 14 7.7521 2.2634 1.9869 13 1 8.3242 0.9907 2.4950 14 1 8.5720 2.7567 0.8515 15 1 7.7528 3.2748 3.0743 16 6 3.9570 -1.6656 -0.0636 17 6 3.4644 -0.9517 -1.3212 18 7 2.0225 -0.6995 -1.1946 19 6 1.1674 -1.1068 -2.1532 20 8 -0.0104 -0.8150 -2.0810 21 6 1.6629 -1.9038 -3.2960 22 7 2.9515 -2.1732 -3.5738 23 6 2.9703 -2.9038 -4.6594 24 7 1.6960 -3.0782 -5.0554 25 6 1.2613 -3.8323 -6.2339 26 6 1.3849 -5.3314 -5.9542 27 6 -0.1964 -3.4908 -6.5489 28 6 2.1417 -3.4623 -7.4292 29 7 0.9224 -2.4698 -4.2236 30 1 -0.3633 -1.0203 -0.1232 31 1 -0.3633 0.4033 0.9452 32 1 -0.3633 0.6169 -0.8219 33 1 1.7660 -0.1669 2.1368 34 1 1.6027 -1.7251 1.2916 35 1 3.6375 1.2240 0.7115 36 1 5.6852 3.8536 0.8532 37 1 5.0413 -1.7694 -0.1039 38 1 3.4984 -2.6526 -0.0054 39 1 3.6504 -1.5796 -2.1926 40 1 3.9929 -0.0047 -1.4311 41 1 3.8497 -3.2930 -5.1510 42 1 0.7578 -5.5951 -5.1025 43 1 1.0620 -5.8925 -6.8311 44 1 2.4234 -5.5748 -5.7298 45 1 -0.2844 -2.4228 -6.7482 46 1 -0.5196 -4.0515 -7.4259 47 1 -0.8235 -3.7543 -5.6973 48 1 3.1802 -3.7056 -7.2048 49 1 1.8187 -4.0236 -8.3060 50 1 2.0537 -2.3943 -7.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044744641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:13 Heat of formation + Delta-G solvation = 96.300685 kcal Electronic energy + Delta-G solvation = -30491.573511 eV Core-core repulsion = 26557.421534 eV Total energy + Delta-G solvation = -3934.151977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -43.59810 -40.00366 -37.71592 -37.19951 -34.14174 -33.11862 -32.11801 -31.79116 -30.79929 -28.95627 -28.07632 -27.95883 -26.91264 -24.89015 -23.86055 -23.43154 -22.85567 -21.58121 -20.28313 -19.94100 -18.44745 -17.26503 -17.06919 -16.67254 -16.30892 -15.89974 -15.23550 -14.88451 -14.65331 -14.55326 -14.09517 -13.87711 -13.82954 -13.61877 -13.23502 -13.14187 -13.00476 -12.88682 -12.76815 -12.54467 -12.34918 -12.18376 -11.91454 -11.85356 -11.79461 -11.57179 -11.27852 -11.06081 -10.87205 -10.72241 -10.65482 -10.49772 -10.41096 -10.14337 -9.84923 -9.57336 -9.54343 -9.41174 -8.94148 -8.74022 -7.99085 -6.88028 -5.70648 -2.98604 1.45040 1.96767 2.10544 3.19324 3.46684 3.52374 3.54547 3.59405 3.86376 4.10029 4.12156 4.22153 4.55782 4.64557 4.70479 4.86384 4.98972 5.04641 5.10570 5.17676 5.26249 5.38457 5.40069 5.42695 5.55703 5.56781 5.71134 5.74670 5.76412 5.86366 5.98464 5.99728 6.09623 6.15046 6.23476 6.31863 6.36425 6.43265 6.59403 6.65574 6.73381 6.85274 6.90441 6.95494 7.12109 7.31022 7.76612 7.80629 8.03757 8.48020 8.52412 9.59199 10.17573 10.52627 11.52121 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.003018 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.437757 B = 9274.801933 C =10246.497178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.171 3.829 6 H 0.048 0.952 7 N -0.721 5.721 8 C -0.233 4.233 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.143 4.143 17 C 0.068 3.932 18 N -0.573 5.573 19 C 0.607 3.393 20 O -0.528 6.528 21 C 0.151 3.849 22 N -0.473 5.473 23 C 0.185 3.815 24 N -0.295 5.295 25 C 0.167 3.833 26 C -0.160 4.160 27 C -0.148 4.148 28 C -0.161 4.161 29 N -0.252 5.252 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.383 0.617 36 H 0.253 0.747 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.142 0.858 40 H 0.076 0.924 41 H 0.220 0.780 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.300 -17.616 -17.290 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.171 4.171 5 C 0.061 3.939 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.365 4.365 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.207 1.207 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.184 4.184 17 C -0.053 4.053 18 N -0.304 5.304 19 C 0.390 3.610 20 O -0.404 6.404 21 C -0.128 4.128 22 N -0.199 5.199 23 C -0.109 4.109 24 N -0.091 5.091 25 C 0.085 3.915 26 C -0.218 4.218 27 C -0.206 4.206 28 C -0.219 4.219 29 N -0.090 5.090 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.218 0.782 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.158 0.842 40 H 0.095 0.905 41 H 0.236 0.764 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.183 -17.294 -16.981 25.919 hybrid contribution 1.377 0.315 0.001 1.413 sum -7.806 -16.978 -16.980 25.249 Atomic orbital electron populations 1.22208 0.93306 1.03191 1.00709 1.21317 0.94780 0.96163 0.83401 0.89897 1.22232 0.97578 1.00126 0.97144 1.20234 0.90302 0.88149 0.95195 0.93393 1.42504 1.13738 1.04741 1.75408 1.19279 0.89817 0.94057 1.33318 0.91211 1.24714 0.98187 0.95958 1.02186 1.69670 1.36323 1.00520 1.51627 0.86155 0.84887 0.77555 0.77829 1.20653 1.22017 1.22058 1.22363 1.01125 0.97667 0.97282 1.22878 0.77497 1.03322 1.01642 1.47944 1.08538 1.54983 1.18976 1.16441 0.85168 0.79109 0.80250 1.90834 1.16410 1.56925 1.76187 1.24057 0.86393 1.03692 0.98694 1.71000 1.19637 1.16161 1.13062 1.26554 0.90134 0.99569 0.94680 1.47754 1.05135 1.36022 1.20221 1.21137 0.97642 0.91278 0.81449 1.22263 1.03541 0.92224 1.03748 1.21987 0.92331 1.03218 1.03040 1.22263 0.99708 1.03517 0.96377 1.74276 1.22263 1.10618 1.01798 0.91974 0.93733 0.90840 0.90702 0.92182 0.78174 0.93663 0.91069 0.93886 0.84165 0.90524 0.76382 0.91245 0.89677 0.91302 0.91238 0.90426 0.90536 0.91068 0.89406 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.61 37.16 0.28 -2.07 16 2 C 0.15 2.70 3.20 -67.60 -0.22 2.48 16 3 H 0.08 1.71 6.64 -51.92 -0.34 1.37 16 4 C -0.13 -2.36 5.07 -26.61 -0.13 -2.49 16 5 C 0.17 3.47 3.10 -67.89 -0.21 3.26 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -17.83 4.31 -53.39 -0.23 -18.06 16 8 C -0.23 -6.39 9.93 -15.06 -0.15 -6.54 16 9 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 10 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 12 Si 0.90 22.44 29.55 -169.99 -5.02 17.41 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 16 C -0.14 -2.66 5.76 -26.83 -0.15 -2.81 16 17 C 0.07 1.28 6.04 -3.93 -0.02 1.25 16 18 N -0.57 -10.64 2.98 -166.57 -0.50 -11.14 16 19 C 0.61 11.39 7.52 -12.32 -0.09 11.30 16 20 O -0.53 -10.66 12.64 5.32 0.07 -10.60 16 21 C 0.15 2.52 7.72 -156.35 -1.21 1.31 16 22 N -0.47 -6.91 7.71 -12.36 -0.10 -7.01 16 23 C 0.18 1.91 11.71 -90.48 -1.06 0.85 16 24 N -0.29 -3.10 3.17 -49.83 -0.16 -3.26 16 25 C 0.17 1.07 1.23 -131.82 -0.16 0.91 16 26 C -0.16 -0.75 8.72 37.16 0.32 -0.42 16 27 C -0.15 -1.00 8.04 37.16 0.30 -0.70 16 28 C -0.16 -0.64 8.28 37.16 0.31 -0.33 16 29 N -0.25 -3.72 11.10 32.08 0.36 -3.37 16 30 H 0.06 1.10 6.83 -51.92 -0.35 0.74 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.35 6.66 -51.93 -0.35 1.00 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.38 10.13 6.06 -40.82 -0.25 9.88 16 36 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.14 2.45 3.64 -80.65 -0.29 2.16 16 40 H 0.08 1.67 7.74 -51.93 -0.40 1.27 16 41 H 0.22 1.21 7.53 -52.48 -0.40 0.82 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.65 8.02 -51.93 -0.42 0.23 16 48 H 0.07 0.20 7.34 -51.93 -0.38 -0.18 16 49 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -34.05 387.64 -9.53 -43.58 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -8.22 Total: 8.55 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.29 Total: 5.48 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: 0.10 Total: -70.27 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.05 -9.53 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.880 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds