Wall clock time and date at job start Wed Apr 1 2020 00:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.70224 * 2 1 4 4 C 1.53190 * 109.58903 * 120.35607 * 2 1 3 5 5 C 1.53041 * 109.31323 * 174.42224 * 4 2 1 6 6 H 1.08994 * 109.46305 * 178.61472 * 5 4 2 7 7 N 1.46504 * 109.45892 * 58.65759 * 5 4 2 8 8 C 1.36935 * 120.00174 * 155.00117 * 7 5 4 9 9 H 1.08005 * 120.00192 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00247 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99664 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00166 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47192 * 359.97438 * 12 10 8 14 14 H 1.48490 * 109.47391 * 119.99812 * 12 10 8 15 15 H 1.48500 * 109.46689 * 239.99875 * 12 10 8 16 16 C 1.53035 * 109.54035 * 298.63716 * 5 4 2 17 17 C 1.52769 * 109.38334 * 61.23930 * 16 5 4 18 18 N 1.46927 * 109.00663 * 305.58696 * 17 16 5 19 19 C 1.34767 * 120.63247 * 233.58318 * 18 17 16 20 20 O 1.21551 * 120.00165 * 184.89458 * 19 18 17 21 21 C 1.47873 * 119.99953 * 4.62443 * 19 18 17 22 22 N 1.34551 * 126.04638 * 352.68903 * 21 19 18 23 23 C 1.30870 * 107.26856 * 179.89544 * 22 21 19 24 24 N 1.34581 * 107.62425 * 0.36702 * 23 22 21 25 25 C 1.46505 * 125.75027 * 179.74629 * 24 23 22 26 26 C 1.53001 * 109.47170 * 74.99994 * 25 24 23 27 27 C 1.53002 * 109.47355 * 194.99741 * 25 24 23 28 28 C 1.52995 * 109.47065 * 315.00129 * 25 24 23 29 29 N 1.28853 * 108.50651 * 359.76632 * 24 23 22 30 30 H 1.09007 * 109.46965 * 173.11382 * 1 2 3 31 31 H 1.09001 * 109.46693 * 293.10749 * 1 2 3 32 32 H 1.08998 * 109.47145 * 53.11132 * 1 2 3 33 33 H 1.08995 * 109.49927 * 294.37633 * 4 2 1 34 34 H 1.09000 * 109.49979 * 54.44413 * 4 2 1 35 35 H 0.97001 * 119.99706 * 334.99721 * 7 5 4 36 36 H 0.97006 * 119.99751 * 180.02562 * 11 10 8 37 37 H 1.09004 * 109.50305 * 181.31473 * 16 5 4 38 38 H 1.08994 * 109.49822 * 301.41426 * 16 5 4 39 39 H 1.09005 * 109.50782 * 185.70767 * 17 16 5 40 40 H 1.09001 * 109.43107 * 65.42605 * 17 16 5 41 41 H 1.08003 * 126.18714 * 180.13726 * 23 22 21 42 42 H 1.08999 * 109.47367 * 59.99792 * 26 25 24 43 43 H 1.08999 * 109.47536 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.47103 * 300.00034 * 26 25 24 45 45 H 1.08998 * 109.46690 * 60.00308 * 27 25 24 46 46 H 1.08997 * 109.47036 * 179.97438 * 27 25 24 47 47 H 1.08994 * 109.47112 * 300.00460 * 27 25 24 48 48 H 1.09004 * 109.47242 * 59.99945 * 28 25 24 49 49 H 1.08997 * 109.47509 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47301 * 299.99889 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1700 6 1 3.9379 -1.3448 2.0667 7 7 4.1570 0.4899 1.0749 8 6 5.4414 0.7039 1.4989 9 1 6.0197 -0.1134 1.9038 10 6 5.9998 1.9716 1.4092 11 7 5.2949 2.9678 0.9162 12 14 7.7521 2.2634 1.9869 13 1 8.3242 0.9907 2.4950 14 1 8.5720 2.7567 0.8515 15 1 7.7528 3.2748 3.0743 16 6 3.9570 -1.6656 -0.0636 17 6 3.4644 -0.9517 -1.3212 18 7 2.0225 -0.6995 -1.1946 19 6 1.1674 -1.1068 -2.1532 20 8 -0.0104 -0.8150 -2.0810 21 6 1.6629 -1.9038 -3.2960 22 7 2.9515 -2.1732 -3.5738 23 6 2.9703 -2.9038 -4.6594 24 7 1.6960 -3.0782 -5.0554 25 6 1.2613 -3.8323 -6.2339 26 6 1.3849 -5.3314 -5.9542 27 6 -0.1964 -3.4908 -6.5489 28 6 2.1417 -3.4623 -7.4292 29 7 0.9224 -2.4698 -4.2236 30 1 -0.3633 -1.0203 -0.1232 31 1 -0.3633 0.4033 0.9452 32 1 -0.3633 0.6169 -0.8219 33 1 1.7660 -0.1669 2.1368 34 1 1.6027 -1.7251 1.2916 35 1 3.6375 1.2240 0.7115 36 1 5.6852 3.8536 0.8532 37 1 5.0413 -1.7694 -0.1039 38 1 3.4984 -2.6526 -0.0054 39 1 3.6504 -1.5796 -2.1926 40 1 3.9929 -0.0047 -1.4311 41 1 3.8497 -3.2930 -5.1510 42 1 0.7578 -5.5951 -5.1025 43 1 1.0620 -5.8925 -6.8311 44 1 2.4234 -5.5748 -5.7298 45 1 -0.2844 -2.4228 -6.7482 46 1 -0.5196 -4.0515 -7.4259 47 1 -0.8235 -3.7543 -5.6973 48 1 3.1802 -3.7056 -7.2048 49 1 1.8187 -4.0236 -8.3060 50 1 2.0537 -2.3943 -7.6285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044744641.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:57 Heat of formation + Delta-G solvation = 76.179127 kcal Electronic energy + Delta-G solvation = -30492.446048 eV Core-core repulsion = 26557.421534 eV Total energy + Delta-G solvation = -3935.024514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.57381 -41.46752 -38.87249 -38.23969 -35.90776 -34.37351 -33.64622 -33.30674 -31.81666 -30.82617 -28.61451 -28.38499 -28.29514 -26.14108 -25.64469 -24.97159 -23.95249 -22.92439 -21.35119 -21.07257 -19.90805 -19.18441 -18.15721 -17.63971 -17.50966 -17.21135 -16.69996 -16.28638 -15.82012 -15.65605 -15.49994 -15.17167 -14.97285 -14.87042 -14.74925 -14.45873 -14.24837 -13.81414 -13.49393 -13.36327 -13.26107 -13.23915 -13.13896 -12.89115 -12.82670 -12.75781 -12.62440 -12.47842 -12.37361 -12.16632 -12.04561 -11.96171 -11.94776 -11.63922 -11.44161 -11.39878 -11.05713 -10.61870 -10.52826 -10.26269 -9.53208 -8.92564 -7.87725 -5.15141 0.34089 1.09312 1.18114 1.50041 1.50325 1.60285 1.90776 2.25878 2.60772 3.02770 3.25053 3.45843 3.66679 3.68436 3.79134 3.85009 3.88556 3.96163 4.06188 4.14922 4.39836 4.44853 4.51545 4.56115 4.60595 4.61804 4.67139 4.70306 4.78291 4.80137 4.82305 4.84236 4.90730 5.03518 5.09702 5.12693 5.14206 5.21316 5.23456 5.25065 5.29069 5.37795 5.39644 5.55081 5.59992 5.68331 5.97580 6.33907 6.38186 6.89314 7.16997 7.40323 8.16362 8.40408 9.36138 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.003018 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.437757 B = 9274.801933 C =10246.497178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.145 3.855 3 H 0.054 0.946 4 C -0.120 4.120 5 C 0.165 3.835 6 H 0.050 0.950 7 N -0.730 5.730 8 C -0.227 4.227 9 H 0.077 0.923 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.265 1.265 14 H -0.297 1.297 15 H -0.298 1.298 16 C -0.133 4.133 17 C 0.078 3.922 18 N -0.575 5.575 19 C 0.603 3.397 20 O -0.551 6.551 21 C 0.120 3.880 22 N -0.503 5.503 23 C 0.201 3.799 24 N -0.285 5.285 25 C 0.156 3.844 26 C -0.155 4.155 27 C -0.148 4.148 28 C -0.157 4.157 29 N -0.267 5.267 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.372 0.628 36 H 0.247 0.753 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.161 0.839 40 H 0.037 0.963 41 H 0.270 0.730 42 H 0.047 0.953 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.110 0.890 47 H 0.052 0.948 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 -20.744 -18.913 29.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.159 4.159 5 C 0.056 3.944 6 H 0.068 0.932 7 N -0.371 5.371 8 C -0.359 4.359 9 H 0.095 0.905 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.189 1.189 14 H -0.225 1.225 15 H -0.226 1.226 16 C -0.173 4.173 17 C -0.044 4.044 18 N -0.307 5.307 19 C 0.388 3.612 20 O -0.428 6.428 21 C -0.158 4.158 22 N -0.229 5.229 23 C -0.092 4.092 24 N -0.081 5.081 25 C 0.076 3.924 26 C -0.213 4.213 27 C -0.206 4.206 28 C -0.215 4.215 29 N -0.107 5.107 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.205 0.795 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.177 0.823 40 H 0.055 0.945 41 H 0.286 0.714 42 H 0.066 0.934 43 H 0.132 0.868 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.129 0.871 47 H 0.071 0.929 48 H 0.108 0.892 49 H 0.133 0.867 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.249 -20.490 -18.612 28.884 hybrid contribution 1.000 1.159 0.346 1.570 sum -7.249 -19.330 -18.266 27.566 Atomic orbital electron populations 1.22034 0.92125 1.02715 1.01034 1.21257 0.95580 0.94890 0.84051 0.92803 1.22123 0.95837 1.01215 0.96732 1.20467 0.91670 0.86259 0.95981 0.93164 1.42665 1.13093 1.06220 1.75150 1.19652 0.90739 0.94032 1.31511 0.90493 1.25490 1.02032 0.96018 1.03486 1.69838 1.37992 1.00658 1.53821 0.85121 0.80470 0.77673 0.76815 1.18893 1.22461 1.22593 1.22221 1.00754 0.98296 0.96067 1.22806 0.77248 1.01596 1.02766 1.47932 1.08469 1.55119 1.19137 1.16734 0.84903 0.78922 0.80646 1.90806 1.17271 1.57858 1.76914 1.23580 0.87548 1.05514 0.99164 1.70687 1.18883 1.17897 1.15396 1.27354 0.91281 0.97398 0.93151 1.48194 1.05001 1.34819 1.20127 1.21682 0.97828 0.92034 0.80815 1.22283 1.04067 0.90692 1.04253 1.22011 0.92643 1.02432 1.03478 1.22314 1.00288 1.02973 0.95902 1.74202 1.23467 1.10865 1.02123 0.92257 0.91846 0.92486 0.90476 0.89990 0.79528 0.94371 0.91799 0.91564 0.82347 0.94465 0.71417 0.93364 0.86778 0.89994 0.93214 0.87113 0.92863 0.89172 0.86663 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 7.61 71.98 0.55 -3.71 16 2 C 0.14 5.51 3.20 44.97 0.14 5.66 16 3 H 0.05 2.36 6.64 -2.38 -0.02 2.35 16 4 C -0.12 -4.25 5.07 30.67 0.16 -4.10 16 5 C 0.16 6.62 3.10 45.02 0.14 6.76 16 6 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 7 N -0.73 -36.81 4.31 -322.81 -1.39 -38.20 16 8 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 10 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 11 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 12 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 13 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 15 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 16 C -0.13 -4.84 5.76 30.53 0.18 -4.67 16 17 C 0.08 2.96 6.04 86.22 0.52 3.48 16 18 N -0.58 -21.94 2.98 -799.18 -2.38 -24.32 16 19 C 0.60 23.25 7.52 86.80 0.65 23.91 16 20 O -0.55 -23.05 12.64 -3.88 -0.05 -23.10 16 21 C 0.12 4.03 7.72 137.13 1.06 5.09 16 22 N -0.50 -14.18 7.71 -193.03 -1.49 -15.66 16 23 C 0.20 3.64 11.71 180.30 2.11 5.75 16 24 N -0.29 -5.49 3.17 -311.58 -0.99 -6.48 16 25 C 0.16 1.58 1.23 3.60 0.00 1.58 16 26 C -0.16 -0.91 8.72 71.98 0.63 -0.28 16 27 C -0.15 -1.79 8.04 71.98 0.58 -1.21 16 28 C -0.16 -0.64 8.28 71.98 0.60 -0.04 16 29 N -0.27 -7.85 11.10 -52.43 -0.58 -8.43 16 30 H 0.06 2.10 6.83 -2.38 -0.02 2.08 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 2.17 6.66 -2.39 -0.02 2.15 16 33 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.37 20.47 6.06 -92.71 -0.56 19.90 16 36 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.16 5.54 3.64 -59.09 -0.21 5.33 16 40 H 0.04 1.70 7.74 -2.39 -0.02 1.68 16 41 H 0.27 1.68 7.53 -2.91 -0.02 1.65 16 42 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 45 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.05 0.89 8.02 -2.39 -0.02 0.87 16 48 H 0.09 0.06 7.34 -2.38 -0.02 0.04 16 49 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 50 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -77.69 387.64 4.22 -73.47 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.17 Total: 31.75 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 8.61 Total: 22.45 kcal Atomic # 7 Polarization: -146.72 SS G_CDS: -6.55 Total: -153.27 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.10 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -77.69 4.22 -73.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744641.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.650 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds