Wall clock time and date at job start Wed Apr 1 2020 00:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.69744 * 2 1 4 4 C 1.53185 * 109.58803 * 120.35634 * 2 1 3 5 5 C 1.53043 * 109.31176 * 174.42341 * 4 2 1 6 6 H 1.09001 * 109.45131 * 58.64842 * 5 4 2 7 7 N 1.46498 * 109.46136 * 178.61693 * 5 4 2 8 8 C 1.36940 * 120.00216 * 205.06779 * 7 5 4 9 9 H 1.07997 * 119.99722 * 359.72061 * 8 7 5 10 10 C 1.38808 * 120.00199 * 179.72438 * 8 7 5 11 11 N 1.31622 * 120.00223 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00202 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.46887 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47248 * 119.99568 * 12 10 8 15 15 H 1.48500 * 109.47163 * 240.00122 * 12 10 8 16 16 C 1.53043 * 109.53610 * 298.63507 * 5 4 2 17 17 C 1.53192 * 109.31104 * 61.36662 * 16 5 4 18 18 N 1.46924 * 108.77531 * 305.36053 * 17 16 5 19 19 C 1.34772 * 120.63045 * 233.58433 * 18 17 16 20 20 O 1.21560 * 119.99499 * 173.73787 * 19 18 17 21 21 C 1.47872 * 120.00375 * 353.74006 * 19 18 17 22 22 N 1.34545 * 126.04510 * 351.44212 * 21 19 18 23 23 C 1.30868 * 107.26758 * 179.89376 * 22 21 19 24 24 N 1.34577 * 107.62562 * 0.36393 * 23 22 21 25 25 C 1.46501 * 125.74840 * 179.72707 * 24 23 22 26 26 C 1.53003 * 109.46984 * 75.02634 * 25 24 23 27 27 C 1.52999 * 109.46956 * 195.01942 * 25 24 23 28 28 C 1.52995 * 109.47552 * 315.02194 * 25 24 23 29 29 N 1.28846 * 108.50291 * 359.77069 * 24 23 22 30 30 H 1.08994 * 109.46942 * 174.90646 * 1 2 3 31 31 H 1.09003 * 109.46618 * 294.90292 * 1 2 3 32 32 H 1.08993 * 109.47313 * 54.90116 * 1 2 3 33 33 H 1.09001 * 109.49597 * 54.47342 * 4 2 1 34 34 H 1.09002 * 109.50102 * 294.37558 * 4 2 1 35 35 H 0.96999 * 120.00204 * 24.79210 * 7 5 4 36 36 H 0.96996 * 120.00190 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49565 * 181.31348 * 16 5 4 38 38 H 1.08997 * 109.49938 * 301.41382 * 16 5 4 39 39 H 1.08999 * 109.58641 * 65.14979 * 17 16 5 40 40 H 1.08998 * 109.58336 * 185.42977 * 17 16 5 41 41 H 1.08003 * 126.18476 * 180.13242 * 23 22 21 42 42 H 1.08994 * 109.47540 * 59.99318 * 26 25 24 43 43 H 1.08997 * 109.47214 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.46712 * 299.99503 * 26 25 24 45 45 H 1.09007 * 109.47084 * 60.00557 * 27 25 24 46 46 H 1.09003 * 109.47401 * 180.02562 * 27 25 24 47 47 H 1.08998 * 109.47444 * 300.00118 * 27 25 24 48 48 H 1.09002 * 109.47159 * 59.99875 * 28 25 24 49 49 H 1.08997 * 109.47278 * 179.97438 * 28 25 24 50 50 H 1.09000 * 109.46865 * 300.00024 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5676 -0.8479 1.1700 6 1 4.0060 0.1475 1.0991 7 7 4.0653 -1.5157 2.3752 8 6 5.3494 -1.2976 2.7980 9 1 5.9966 -0.6368 2.2405 10 6 5.8193 -1.9259 3.9431 11 7 5.0307 -2.7318 4.6223 12 14 7.5711 -1.6290 4.5195 13 1 8.2461 -0.6894 3.5883 14 1 7.5507 -1.0434 5.8840 15 1 8.3091 -2.9174 4.5447 16 6 3.9569 -1.6656 -0.0637 17 6 3.4650 -0.9468 -1.3238 18 7 2.0225 -0.6995 -1.1945 19 6 1.1674 -1.1060 -2.1537 20 8 -0.0315 -0.9984 -1.9844 21 6 1.6876 -1.6830 -3.4119 22 7 2.9767 -1.7118 -3.7961 23 6 3.0215 -2.3058 -4.9614 24 7 1.7614 -2.6357 -5.2994 25 6 1.3557 -3.3141 -6.5329 26 6 1.7250 -4.7963 -6.4448 27 6 -0.1568 -3.1755 -6.7174 28 6 2.0752 -2.6791 -7.7245 29 7 0.9716 -2.2535 -4.3558 30 1 -0.3633 -1.0236 -0.0912 31 1 -0.3633 0.4328 0.9322 32 1 -0.3633 0.5909 -0.8407 33 1 1.6030 -1.7253 1.2912 34 1 1.7661 -0.1669 2.1368 35 1 3.4841 -2.1093 2.8759 36 1 5.3589 -3.1705 5.4227 37 1 5.0413 -1.7694 -0.1039 38 1 3.4984 -2.6527 -0.0055 39 1 3.9902 0.0022 -1.4317 40 1 3.6541 -1.5704 -2.1975 41 1 3.9089 -2.4935 -5.5477 42 1 1.2125 -5.2486 -5.5959 43 1 1.4228 -5.3011 -7.3623 44 1 2.8025 -4.8950 -6.3134 45 1 -0.4199 -2.1195 -6.7801 46 1 -0.4587 -3.6806 -7.6349 47 1 -0.6694 -3.6279 -5.8685 48 1 3.1527 -2.7779 -7.5931 49 1 1.7737 -3.1842 -8.6421 50 1 1.8120 -1.6232 -7.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044744643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:23 Heat of formation + Delta-G solvation = 91.887249 kcal Electronic energy + Delta-G solvation = -29973.461058 eV Core-core repulsion = 26039.117700 eV Total energy + Delta-G solvation = -3934.343358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.68903 -40.13043 -37.76219 -37.19095 -34.46136 -33.22633 -32.27031 -31.83111 -30.90465 -29.17007 -28.12698 -28.00331 -26.93692 -24.96985 -24.03710 -23.34880 -22.53461 -21.58922 -20.35999 -20.05484 -19.15696 -17.38307 -17.04576 -16.76423 -16.45732 -15.99029 -15.18296 -15.02328 -14.75047 -14.70754 -14.37491 -13.97672 -13.74144 -13.58738 -13.31334 -13.15344 -13.03294 -12.97366 -12.86533 -12.50034 -12.39919 -12.36902 -12.07529 -11.89820 -11.83813 -11.56276 -11.45163 -11.28900 -10.87331 -10.80606 -10.65715 -10.56024 -10.48838 -10.14617 -9.87219 -9.73127 -9.63054 -9.59619 -9.07198 -8.80729 -8.27413 -6.89889 -5.72011 -3.00449 1.35117 1.88706 1.98793 3.01633 3.44105 3.45795 3.51299 3.53626 3.79994 3.98518 4.06115 4.16965 4.44615 4.59961 4.62558 4.81523 4.93149 5.00442 5.05234 5.12583 5.21046 5.23491 5.29246 5.34618 5.45816 5.53066 5.55343 5.66530 5.69933 5.74023 5.80924 5.87774 6.01390 6.08036 6.13439 6.23293 6.27453 6.34463 6.50719 6.54558 6.61036 6.65075 6.73258 6.89181 7.06307 7.19462 7.58766 7.74769 7.90272 8.34674 8.46570 9.57565 10.16414 10.51288 11.50851 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.002666 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.621028 B =10498.456623 C =11580.166233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.177 3.823 6 H 0.047 0.953 7 N -0.725 5.725 8 C -0.234 4.234 9 H 0.071 0.929 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.293 1.293 16 C -0.147 4.147 17 C 0.080 3.920 18 N -0.580 5.580 19 C 0.611 3.389 20 O -0.522 6.522 21 C 0.146 3.854 22 N -0.477 5.477 23 C 0.185 3.815 24 N -0.294 5.294 25 C 0.167 3.833 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.160 4.160 29 N -0.250 5.250 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.130 0.870 41 H 0.220 0.780 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -0.630 -28.174 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.173 4.173 5 C 0.067 3.933 6 H 0.065 0.935 7 N -0.365 5.365 8 C -0.366 4.366 9 H 0.089 0.911 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.737 3.263 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.188 4.188 17 C -0.043 4.043 18 N -0.313 5.313 19 C 0.395 3.605 20 O -0.397 6.397 21 C -0.133 4.133 22 N -0.203 5.203 23 C -0.109 4.109 24 N -0.090 5.090 25 C 0.085 3.915 26 C -0.219 4.219 27 C -0.206 4.206 28 C -0.218 4.218 29 N -0.088 5.088 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.237 0.763 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.365 -0.431 -27.799 29.034 hybrid contribution 1.317 -0.302 0.319 1.388 sum -7.048 -0.734 -27.480 28.379 Atomic orbital electron populations 1.22232 0.92868 1.03964 1.00382 1.21381 0.95421 0.95072 0.83568 0.90832 1.22292 0.97693 1.00965 0.96347 1.20213 0.90815 0.95024 0.87241 0.93492 1.42448 1.12825 1.54490 1.26740 1.19291 0.89109 1.22091 1.06064 0.91121 1.24743 0.98111 1.00056 0.98253 1.69677 1.35259 1.34001 1.19286 0.86140 0.84629 0.77230 0.78348 1.20557 1.21958 1.21977 1.22631 1.01512 0.99784 0.94913 1.22718 0.77941 1.01811 1.01779 1.47931 1.08360 1.55968 1.19002 1.16438 0.85418 0.78165 0.80530 1.90860 1.14748 1.55620 1.78452 1.23993 0.86849 1.04535 0.97943 1.71207 1.19088 1.19990 1.09975 1.26489 0.90688 0.99032 0.94712 1.47763 1.05422 1.40224 1.15611 1.21156 0.98025 0.92640 0.79705 1.22271 1.02942 0.92500 1.04158 1.21993 0.91301 1.03852 1.03447 1.22259 1.00999 1.02086 0.96458 1.74276 1.21834 1.14641 0.98034 0.90756 0.93604 0.91660 0.91758 0.90555 0.78329 0.93638 0.90801 0.92647 0.91989 0.85302 0.76332 0.91163 0.89615 0.91249 0.91281 0.90366 0.90498 0.91070 0.89352 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.60 37.16 0.28 -1.84 16 2 C 0.15 2.36 3.49 -67.60 -0.24 2.13 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -2.39 4.84 -26.61 -0.13 -2.52 16 5 C 0.18 3.60 2.73 -67.89 -0.19 3.42 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -18.45 5.12 -53.38 -0.27 -18.72 16 8 C -0.23 -6.53 9.93 -15.06 -0.15 -6.68 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 12 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 C -0.15 -2.74 5.66 -26.61 -0.15 -2.89 16 17 C 0.08 1.26 6.10 -3.71 -0.02 1.24 16 18 N -0.58 -9.46 2.97 -166.32 -0.49 -9.95 16 19 C 0.61 10.44 7.61 -12.32 -0.09 10.34 16 20 O -0.52 -9.77 12.49 5.31 0.07 -9.71 16 21 C 0.15 2.24 7.64 -156.36 -1.19 1.05 16 22 N -0.48 -6.25 7.87 -12.37 -0.10 -6.35 16 23 C 0.19 1.72 11.71 -90.49 -1.06 0.66 16 24 N -0.29 -2.84 3.17 -49.84 -0.16 -3.00 16 25 C 0.17 0.96 1.23 -131.82 -0.16 0.80 16 26 C -0.16 -0.72 8.72 37.16 0.32 -0.39 16 27 C -0.15 -0.91 8.04 37.16 0.30 -0.61 16 28 C -0.16 -0.50 8.28 37.16 0.31 -0.20 16 29 N -0.25 -3.46 11.10 32.07 0.36 -3.11 16 30 H 0.07 1.28 6.61 -51.93 -0.34 0.93 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.04 6.88 -51.93 -0.36 0.68 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.38 10.47 7.80 -40.82 -0.32 10.15 16 36 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.13 1.97 4.13 -60.45 -0.25 1.73 16 41 H 0.22 0.99 7.53 -52.48 -0.40 0.59 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.62 8.02 -51.93 -0.42 0.20 16 48 H 0.07 0.14 7.34 -51.93 -0.38 -0.24 16 49 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 50 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -34.71 392.24 -9.60 -44.31 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.35 Total: 7.00 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.27 Total: 3.94 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: 0.06 Total: -69.00 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.71 -9.60 -44.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.200 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds