Wall clock time and date at job start Wed Apr 1 2020 00:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.69744 * 2 1 4 4 C 1.53185 * 109.58803 * 120.35634 * 2 1 3 5 5 C 1.53043 * 109.31176 * 174.42341 * 4 2 1 6 6 H 1.09001 * 109.45131 * 58.64842 * 5 4 2 7 7 N 1.46498 * 109.46136 * 178.61693 * 5 4 2 8 8 C 1.36940 * 120.00216 * 205.06779 * 7 5 4 9 9 H 1.07997 * 119.99722 * 359.72061 * 8 7 5 10 10 C 1.38808 * 120.00199 * 179.72438 * 8 7 5 11 11 N 1.31622 * 120.00223 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00202 * 179.97438 * 10 8 7 13 13 H 1.48510 * 109.46887 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47248 * 119.99568 * 12 10 8 15 15 H 1.48500 * 109.47163 * 240.00122 * 12 10 8 16 16 C 1.53043 * 109.53610 * 298.63507 * 5 4 2 17 17 C 1.53192 * 109.31104 * 61.36662 * 16 5 4 18 18 N 1.46924 * 108.77531 * 305.36053 * 17 16 5 19 19 C 1.34772 * 120.63045 * 233.58433 * 18 17 16 20 20 O 1.21560 * 119.99499 * 173.73787 * 19 18 17 21 21 C 1.47872 * 120.00375 * 353.74006 * 19 18 17 22 22 N 1.34545 * 126.04510 * 351.44212 * 21 19 18 23 23 C 1.30868 * 107.26758 * 179.89376 * 22 21 19 24 24 N 1.34577 * 107.62562 * 0.36393 * 23 22 21 25 25 C 1.46501 * 125.74840 * 179.72707 * 24 23 22 26 26 C 1.53003 * 109.46984 * 75.02634 * 25 24 23 27 27 C 1.52999 * 109.46956 * 195.01942 * 25 24 23 28 28 C 1.52995 * 109.47552 * 315.02194 * 25 24 23 29 29 N 1.28846 * 108.50291 * 359.77069 * 24 23 22 30 30 H 1.08994 * 109.46942 * 174.90646 * 1 2 3 31 31 H 1.09003 * 109.46618 * 294.90292 * 1 2 3 32 32 H 1.08993 * 109.47313 * 54.90116 * 1 2 3 33 33 H 1.09001 * 109.49597 * 54.47342 * 4 2 1 34 34 H 1.09002 * 109.50102 * 294.37558 * 4 2 1 35 35 H 0.96999 * 120.00204 * 24.79210 * 7 5 4 36 36 H 0.96996 * 120.00190 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49565 * 181.31348 * 16 5 4 38 38 H 1.08997 * 109.49938 * 301.41382 * 16 5 4 39 39 H 1.08999 * 109.58641 * 65.14979 * 17 16 5 40 40 H 1.08998 * 109.58336 * 185.42977 * 17 16 5 41 41 H 1.08003 * 126.18476 * 180.13242 * 23 22 21 42 42 H 1.08994 * 109.47540 * 59.99318 * 26 25 24 43 43 H 1.08997 * 109.47214 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.46712 * 299.99503 * 26 25 24 45 45 H 1.09007 * 109.47084 * 60.00557 * 27 25 24 46 46 H 1.09003 * 109.47401 * 180.02562 * 27 25 24 47 47 H 1.08998 * 109.47444 * 300.00118 * 27 25 24 48 48 H 1.09002 * 109.47159 * 59.99875 * 28 25 24 49 49 H 1.08997 * 109.47278 * 179.97438 * 28 25 24 50 50 H 1.09000 * 109.46865 * 300.00024 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 3.5676 -0.8479 1.1700 6 1 4.0060 0.1475 1.0991 7 7 4.0653 -1.5157 2.3752 8 6 5.3494 -1.2976 2.7980 9 1 5.9966 -0.6368 2.2405 10 6 5.8193 -1.9259 3.9431 11 7 5.0307 -2.7318 4.6223 12 14 7.5711 -1.6290 4.5195 13 1 8.2461 -0.6894 3.5883 14 1 7.5507 -1.0434 5.8840 15 1 8.3091 -2.9174 4.5447 16 6 3.9569 -1.6656 -0.0637 17 6 3.4650 -0.9468 -1.3238 18 7 2.0225 -0.6995 -1.1945 19 6 1.1674 -1.1060 -2.1537 20 8 -0.0315 -0.9984 -1.9844 21 6 1.6876 -1.6830 -3.4119 22 7 2.9767 -1.7118 -3.7961 23 6 3.0215 -2.3058 -4.9614 24 7 1.7614 -2.6357 -5.2994 25 6 1.3557 -3.3141 -6.5329 26 6 1.7250 -4.7963 -6.4448 27 6 -0.1568 -3.1755 -6.7174 28 6 2.0752 -2.6791 -7.7245 29 7 0.9716 -2.2535 -4.3558 30 1 -0.3633 -1.0236 -0.0912 31 1 -0.3633 0.4328 0.9322 32 1 -0.3633 0.5909 -0.8407 33 1 1.6030 -1.7253 1.2912 34 1 1.7661 -0.1669 2.1368 35 1 3.4841 -2.1093 2.8759 36 1 5.3589 -3.1705 5.4227 37 1 5.0413 -1.7694 -0.1039 38 1 3.4984 -2.6527 -0.0055 39 1 3.9902 0.0022 -1.4317 40 1 3.6541 -1.5704 -2.1975 41 1 3.9089 -2.4935 -5.5477 42 1 1.2125 -5.2486 -5.5959 43 1 1.4228 -5.3011 -7.3623 44 1 2.8025 -4.8950 -6.3134 45 1 -0.4199 -2.1195 -6.7801 46 1 -0.4587 -3.6806 -7.6349 47 1 -0.6694 -3.6279 -5.8685 48 1 3.1527 -2.7779 -7.5931 49 1 1.7737 -3.1842 -8.6421 50 1 1.8120 -1.6232 -7.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044744643.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:17 Heat of formation + Delta-G solvation = 71.015035 kcal Electronic energy + Delta-G solvation = -29974.366145 eV Core-core repulsion = 26039.117700 eV Total energy + Delta-G solvation = -3935.248445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 6.11 seconds Orbital eigenvalues (eV) -44.56010 -41.44972 -38.76815 -38.23336 -36.21404 -34.36954 -33.68686 -33.32637 -31.84210 -30.96742 -28.59161 -28.39861 -28.29260 -26.24182 -25.64488 -24.56712 -23.77496 -22.83086 -21.57921 -21.07017 -20.42857 -19.12796 -18.19155 -17.65057 -17.49036 -17.18670 -16.70681 -16.30749 -16.04106 -15.51484 -15.46407 -15.20126 -15.00370 -14.90512 -14.64212 -14.61929 -13.97291 -13.90333 -13.53376 -13.36963 -13.28819 -13.21660 -13.08927 -12.99492 -12.87642 -12.76719 -12.63456 -12.62015 -12.35789 -12.10077 -12.04616 -12.03375 -11.95931 -11.73935 -11.42352 -11.36202 -11.12468 -10.69062 -10.53501 -10.36386 -9.62291 -8.98327 -7.91441 -5.20368 0.34440 1.09449 1.17952 1.48967 1.49772 1.59917 1.87306 2.25301 2.58187 3.00743 3.25180 3.42003 3.66271 3.67368 3.73491 3.78697 3.85546 3.91980 4.09431 4.16292 4.30577 4.35388 4.54833 4.59063 4.59307 4.61910 4.64235 4.69483 4.73247 4.78553 4.80701 4.82978 4.86451 5.02560 5.04154 5.07202 5.12667 5.13992 5.20919 5.22934 5.27018 5.41843 5.47414 5.51104 5.55862 5.65711 5.86554 6.29268 6.31059 6.88110 7.15573 7.35795 8.10938 8.35123 9.32615 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.002666 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.621028 B =10498.456623 C =11580.166233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.151 3.849 3 H 0.093 0.907 4 C -0.122 4.122 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.738 5.738 8 C -0.232 4.232 9 H 0.079 0.921 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.972 3.028 13 H -0.263 1.263 14 H -0.296 1.296 15 H -0.296 1.296 16 C -0.135 4.135 17 C 0.092 3.908 18 N -0.582 5.582 19 C 0.606 3.394 20 O -0.548 6.548 21 C 0.117 3.883 22 N -0.499 5.499 23 C 0.200 3.800 24 N -0.286 5.286 25 C 0.157 3.843 26 C -0.157 4.157 27 C -0.148 4.148 28 C -0.155 4.155 29 N -0.271 5.271 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.141 0.859 41 H 0.270 0.730 42 H 0.044 0.956 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.109 0.891 47 H 0.049 0.951 48 H 0.090 0.910 49 H 0.113 0.887 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -0.233 -31.330 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.111 0.889 4 C -0.161 4.161 5 C 0.065 3.935 6 H 0.069 0.931 7 N -0.377 5.377 8 C -0.363 4.363 9 H 0.097 0.903 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.802 3.198 13 H -0.187 1.187 14 H -0.223 1.223 15 H -0.223 1.223 16 C -0.176 4.176 17 C -0.031 4.031 18 N -0.314 5.314 19 C 0.391 3.609 20 O -0.425 6.425 21 C -0.162 4.162 22 N -0.226 5.226 23 C -0.094 4.094 24 N -0.083 5.083 25 C 0.077 3.923 26 C -0.215 4.215 27 C -0.205 4.205 28 C -0.213 4.213 29 N -0.111 5.111 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.158 0.842 41 H 0.285 0.715 42 H 0.063 0.937 43 H 0.132 0.868 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.128 0.872 47 H 0.068 0.932 48 H 0.108 0.892 49 H 0.132 0.868 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.748 -0.011 -31.022 31.747 hybrid contribution 0.741 -0.476 1.126 1.429 sum -6.007 -0.487 -29.896 30.497 Atomic orbital electron populations 1.22070 0.92435 1.02653 1.01078 1.21396 0.95687 0.95551 0.82537 0.88946 1.22146 0.95870 1.00451 0.97651 1.20429 0.92233 0.94789 0.86046 0.93110 1.42666 1.12158 1.54651 1.28183 1.19679 0.89997 1.21028 1.05638 0.90272 1.25576 1.02160 1.00593 0.98904 1.69843 1.37177 1.35648 1.19822 0.85077 0.79995 0.77043 0.77700 1.18681 1.22311 1.22306 1.22422 1.00788 0.98792 0.95550 1.22671 0.77648 1.02362 1.00385 1.47960 1.08490 1.55946 1.19030 1.16723 0.85188 0.77730 0.81268 1.90835 1.15743 1.56636 1.79275 1.23630 0.88040 1.06528 0.97954 1.71014 1.18117 1.21499 1.11953 1.27338 0.91729 0.96637 0.93683 1.48173 1.05331 1.39161 1.15592 1.21655 0.98035 0.93548 0.79084 1.22294 1.03431 0.91250 1.04527 1.22006 0.91783 1.02888 1.03853 1.22299 1.01822 1.01358 0.95812 1.74203 1.23256 1.14892 0.98783 0.92917 0.91891 0.92006 0.93355 0.90430 0.79906 0.94210 0.91613 0.94585 0.90527 0.84234 0.71457 0.93713 0.86813 0.90053 0.92879 0.87227 0.93153 0.89161 0.86814 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 7.60 71.98 0.55 -3.34 16 2 C 0.15 4.75 3.49 44.97 0.16 4.91 16 3 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 4 C -0.12 -4.40 4.84 30.67 0.15 -4.26 16 5 C 0.17 7.06 2.73 45.02 0.12 7.18 16 6 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 7 N -0.74 -38.13 5.12 -322.81 -1.65 -39.78 16 8 C -0.23 -12.92 9.93 84.03 0.83 -12.08 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 11 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 12 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 14 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 15 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 16 C -0.13 -5.01 5.66 30.67 0.17 -4.84 16 17 C 0.09 2.82 6.10 86.36 0.53 3.34 16 18 N -0.58 -18.92 2.97 -798.38 -2.37 -21.29 16 19 C 0.61 21.05 7.61 86.80 0.66 21.71 16 20 O -0.55 -21.21 12.49 -3.90 -0.05 -21.26 16 21 C 0.12 3.58 7.64 137.13 1.05 4.62 16 22 N -0.50 -12.38 7.87 -193.04 -1.52 -13.90 16 23 C 0.20 3.17 11.71 180.30 2.11 5.28 16 24 N -0.29 -5.09 3.17 -311.59 -0.99 -6.08 16 25 C 0.16 1.44 1.23 3.60 0.00 1.45 16 26 C -0.16 -0.97 8.72 71.98 0.63 -0.35 16 27 C -0.15 -1.66 8.04 71.98 0.58 -1.08 16 28 C -0.16 -0.38 8.28 71.98 0.60 0.21 16 29 N -0.27 -7.54 11.10 -52.44 -0.58 -8.12 16 30 H 0.05 1.87 6.61 -2.39 -0.02 1.85 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.97 6.88 -2.39 -0.02 1.95 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.37 20.85 7.80 -92.71 -0.72 20.13 16 36 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 40 H 0.14 4.14 4.13 -19.21 -0.08 4.06 16 41 H 0.27 1.11 7.53 -2.91 -0.02 1.09 16 42 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.05 0.83 8.02 -2.39 -0.02 0.81 16 48 H 0.09 -0.09 7.34 -2.39 -0.02 -0.11 16 49 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 50 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -78.32 392.24 3.89 -74.42 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.14 Total: 29.48 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 8.60 Total: 18.55 kcal Atomic # 7 Polarization: -142.96 SS G_CDS: -6.83 Total: -149.79 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.32 3.89 -74.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744643.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.439 kcal (2) G-P(sol) polarization free energy of solvation -78.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.11 seconds