Wall clock time and date at job start Wed Apr 1 2020 00:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.69974 * 2 1 4 4 C 1.53196 * 109.58481 * 239.64354 * 2 1 3 5 5 C 1.53038 * 109.31095 * 185.57856 * 4 2 1 6 6 H 1.09007 * 109.46412 * 301.36097 * 5 4 2 7 7 N 1.46497 * 109.46049 * 181.38809 * 5 4 2 8 8 C 1.36939 * 119.99910 * 154.97517 * 7 5 4 9 9 H 1.07997 * 120.00133 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99668 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00123 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47149 * 60.00018 * 12 10 8 14 14 H 1.48497 * 109.47235 * 299.99514 * 12 10 8 15 15 H 1.48505 * 109.47091 * 179.97438 * 12 10 8 16 16 C 1.53046 * 109.52922 * 61.36940 * 5 4 2 17 17 C 1.53194 * 109.31164 * 298.61724 * 16 5 4 18 18 N 1.46924 * 108.76636 * 54.65569 * 17 16 5 19 19 C 1.34766 * 120.63496 * 126.36202 * 18 17 16 20 20 O 1.21562 * 120.00437 * 186.47953 * 19 18 17 21 21 C 1.47872 * 120.00127 * 6.47788 * 19 18 17 22 22 N 1.34553 * 126.04481 * 7.18692 * 21 19 18 23 23 C 1.30870 * 107.26915 * 179.89214 * 22 21 19 24 24 N 1.34581 * 107.62488 * 0.36735 * 23 22 21 25 25 C 1.46505 * 125.74877 * 179.73008 * 24 23 22 26 26 C 1.52995 * 109.46851 * 75.01707 * 25 24 23 27 27 C 1.53001 * 109.46891 * 195.01612 * 25 24 23 28 28 C 1.52999 * 109.47119 * 315.01749 * 25 24 23 29 29 N 1.28850 * 108.50453 * 359.76493 * 24 23 22 30 30 H 1.08993 * 109.47007 * 183.11345 * 1 2 3 31 31 H 1.09000 * 109.47056 * 303.11737 * 1 2 3 32 32 H 1.09005 * 109.46937 * 63.10884 * 1 2 3 33 33 H 1.09002 * 109.49631 * 65.63181 * 4 2 1 34 34 H 1.08998 * 109.49338 * 305.52849 * 4 2 1 35 35 H 0.96998 * 119.99882 * 334.96444 * 7 5 4 36 36 H 0.97001 * 120.00127 * 0.02562 * 11 10 8 37 37 H 1.08998 * 109.49155 * 58.57835 * 16 5 4 38 38 H 1.08999 * 109.49931 * 178.67803 * 16 5 4 39 39 H 1.08999 * 109.59542 * 294.86304 * 17 16 5 40 40 H 1.09001 * 109.69914 * 174.50132 * 17 16 5 41 41 H 1.08001 * 126.18507 * 180.13010 * 23 22 21 42 42 H 1.08997 * 109.47753 * 60.00128 * 26 25 24 43 43 H 1.09003 * 109.47063 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.47292 * 299.99872 * 26 25 24 45 45 H 1.09004 * 109.47241 * 60.00457 * 27 25 24 46 46 H 1.09003 * 109.46602 * 180.02562 * 27 25 24 47 47 H 1.09003 * 109.47259 * 299.99912 * 27 25 24 48 48 H 1.08998 * 109.46930 * 59.99621 * 28 25 24 49 49 H 1.08996 * 109.46982 * 180.02562 * 28 25 24 50 50 H 1.09003 * 109.46723 * 300.00194 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1702 6 1 4.0062 0.1473 -1.0991 7 7 4.0652 -1.5158 -2.3754 8 6 5.3495 -1.2983 -2.7977 9 1 5.9954 -0.6343 -2.2425 10 6 5.8213 -1.9315 -3.9394 11 7 5.0343 -2.7411 -4.6158 12 14 7.5730 -1.6344 -4.5159 13 1 8.5218 -2.0557 -3.4541 14 1 7.7613 -0.1897 -4.8032 15 1 7.8288 -2.4221 -5.7486 16 6 3.9566 -1.6659 0.0635 17 6 3.4650 -0.9469 1.3238 18 7 2.0225 -0.6996 1.1945 19 6 1.1674 -1.1069 2.1531 20 8 -0.0317 -1.0029 1.9823 21 6 1.6875 -1.6804 3.4129 22 7 2.9791 -1.7282 3.7872 23 6 3.0225 -2.3071 4.9601 24 7 1.7607 -2.6233 5.3054 25 6 1.3544 -3.2925 6.5438 26 6 1.4295 -2.3017 7.7071 27 6 -0.0809 -3.8028 6.4003 28 6 2.2901 -4.4717 6.8170 29 7 0.9704 -2.2391 4.3632 30 1 -0.3633 -1.0261 0.0558 31 1 -0.3633 0.5615 0.8607 32 1 -0.3633 0.4648 -0.9166 33 1 1.7661 -0.1668 -2.1369 34 1 1.6029 -1.7253 -1.2913 35 1 3.4850 -2.1120 -2.8741 36 1 4.1245 -2.8952 -4.3166 37 1 3.4978 -2.6529 0.0051 38 1 5.0409 -1.7700 0.1038 39 1 3.9903 0.0020 1.4316 40 1 3.6520 -1.5696 2.1986 41 1 3.9107 -2.4999 5.5435 42 1 0.7629 -1.4615 7.5126 43 1 1.1276 -2.7996 8.6285 44 1 2.4520 -1.9380 7.8093 45 1 -0.1344 -4.5087 5.5715 46 1 -0.3833 -4.3003 7.3218 47 1 -0.7475 -2.9626 6.2057 48 1 3.3126 -4.1081 6.9190 49 1 1.9875 -4.9698 7.7380 50 1 2.2366 -5.1775 5.9880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044744645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:28 Heat of formation + Delta-G solvation = 92.301777 kcal Electronic energy + Delta-G solvation = -30017.764644 eV Core-core repulsion = 26083.439261 eV Total energy + Delta-G solvation = -3934.325383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 5.37 seconds Orbital eigenvalues (eV) -43.72121 -40.18550 -37.79363 -37.26780 -34.68436 -33.29486 -32.31465 -31.96684 -30.93969 -28.97350 -28.14490 -28.02507 -26.91612 -24.98503 -23.88215 -23.35673 -22.64538 -21.65009 -20.38973 -20.20082 -19.20473 -17.41858 -17.19750 -16.81027 -16.51258 -16.04862 -15.33733 -15.08129 -14.74180 -14.69787 -14.40250 -14.01384 -13.94175 -13.59345 -13.39478 -13.21794 -13.14437 -13.02833 -12.92327 -12.65015 -12.43665 -12.37590 -12.10887 -11.94560 -11.86127 -11.66665 -11.45914 -11.32606 -10.79954 -10.73466 -10.60803 -10.55169 -10.49744 -10.02525 -9.94044 -9.76438 -9.66570 -9.21330 -9.05925 -8.80823 -8.32221 -6.97404 -6.04923 -3.04227 1.31486 1.85548 1.95116 2.96785 3.40158 3.54222 3.58046 3.75452 3.77618 3.94599 4.04098 4.14754 4.41143 4.56393 4.70693 4.79740 4.91535 4.97706 5.01737 5.10738 5.16376 5.19559 5.21467 5.32923 5.40358 5.49138 5.50313 5.63887 5.66237 5.71310 5.75231 5.81706 5.94129 6.03386 6.06678 6.16563 6.21861 6.24856 6.43865 6.46822 6.52718 6.54662 6.68542 6.82473 6.99296 7.12093 7.53604 7.85962 7.86516 8.30028 8.80790 9.28628 10.15107 10.30945 11.43598 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002673 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.604180 B =10471.172840 C =11554.203168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.183 3.817 6 H 0.048 0.952 7 N -0.736 5.736 8 C -0.327 4.327 9 H 0.064 0.936 10 C -0.047 4.047 11 N -0.946 5.946 12 Si 1.079 2.921 13 H -0.296 1.296 14 H -0.296 1.296 15 H -0.286 1.286 16 C -0.146 4.146 17 C 0.079 3.921 18 N -0.581 5.581 19 C 0.611 3.389 20 O -0.522 6.522 21 C 0.146 3.854 22 N -0.477 5.477 23 C 0.186 3.814 24 N -0.294 5.294 25 C 0.167 3.833 26 C -0.159 4.159 27 C -0.149 4.149 28 C -0.161 4.161 29 N -0.249 5.249 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.366 0.634 36 H 0.255 0.745 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.133 0.867 41 H 0.221 0.779 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 -0.325 28.506 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.073 3.927 6 H 0.066 0.934 7 N -0.378 5.378 8 C -0.458 4.458 9 H 0.082 0.918 10 C -0.245 4.245 11 N -0.591 5.591 12 Si 0.910 3.090 13 H -0.223 1.223 14 H -0.223 1.223 15 H -0.211 1.211 16 C -0.187 4.187 17 C -0.044 4.044 18 N -0.313 5.313 19 C 0.395 3.605 20 O -0.396 6.396 21 C -0.134 4.134 22 N -0.203 5.203 23 C -0.108 4.108 24 N -0.090 5.090 25 C 0.085 3.915 26 C -0.218 4.218 27 C -0.206 4.206 28 C -0.219 4.219 29 N -0.087 5.087 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.199 0.801 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.149 0.851 41 H 0.237 0.763 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.037 -0.439 27.084 27.986 hybrid contribution -0.775 0.066 1.340 1.550 sum -7.812 -0.373 28.424 29.481 Atomic orbital electron populations 1.22232 0.92789 1.03770 1.00613 1.21367 0.95464 0.95071 0.83500 0.90770 1.22308 0.97711 1.00874 0.96518 1.20149 0.90653 0.95060 0.86885 0.93369 1.42448 1.12996 1.54805 1.27537 1.20038 0.89643 1.26059 1.10092 0.91780 1.25752 1.06248 0.97729 0.94733 1.70870 1.08187 1.38526 1.41542 0.83250 0.74223 0.75433 0.76057 1.22330 1.22308 1.21119 1.22606 1.01568 0.99637 0.94934 1.22757 0.77916 1.01872 1.01811 1.47932 1.08374 1.55979 1.19046 1.16435 0.85411 0.78154 0.80527 1.90861 1.14728 1.55493 1.78545 1.23981 0.86774 1.04749 0.97862 1.71178 1.19061 1.20053 1.10014 1.26499 0.90652 0.99238 0.94456 1.47774 1.05349 1.40460 1.15408 1.21164 0.97936 0.92753 0.79681 1.22262 1.03579 0.99198 0.96722 1.21998 0.92693 1.02764 1.03178 1.22269 0.99135 0.96577 1.03916 1.74279 1.21859 1.14494 0.98092 0.90999 0.91346 0.93622 0.90653 0.91894 0.80099 0.93389 0.92816 0.90759 0.91976 0.85052 0.76295 0.91248 0.89595 0.91310 0.91219 0.90331 0.90530 0.91053 0.89317 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.59 37.16 0.28 -1.84 16 2 C 0.15 2.38 3.49 -67.59 -0.24 2.15 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -2.42 4.84 -26.61 -0.13 -2.55 16 5 C 0.18 3.77 2.73 -67.89 -0.19 3.58 16 6 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 7 N -0.74 -18.84 5.12 -53.38 -0.27 -19.11 16 8 C -0.33 -9.29 9.93 -15.06 -0.15 -9.44 16 9 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 11 N -0.95 -29.77 13.70 55.49 0.76 -29.01 16 12 Si 1.08 26.24 29.92 -169.99 -5.09 21.16 16 13 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 C -0.15 -2.76 5.66 -26.61 -0.15 -2.91 16 17 C 0.08 1.26 6.11 -3.71 -0.02 1.24 16 18 N -0.58 -9.52 2.97 -166.31 -0.49 -10.01 16 19 C 0.61 10.45 7.62 -12.32 -0.09 10.36 16 20 O -0.52 -9.76 12.49 5.31 0.07 -9.69 16 21 C 0.15 2.23 7.65 -156.35 -1.20 1.04 16 22 N -0.48 -6.27 7.85 -12.36 -0.10 -6.37 16 23 C 0.19 1.72 11.71 -90.48 -1.06 0.66 16 24 N -0.29 -2.83 3.17 -49.84 -0.16 -2.99 16 25 C 0.17 0.96 1.23 -131.82 -0.16 0.79 16 26 C -0.16 -0.64 8.72 37.16 0.32 -0.31 16 27 C -0.15 -0.92 8.04 37.16 0.30 -0.62 16 28 C -0.16 -0.55 8.28 37.16 0.31 -0.25 16 29 N -0.25 -3.45 11.10 32.08 0.36 -3.09 16 30 H 0.07 1.23 6.75 -51.93 -0.35 0.88 16 31 H 0.07 1.09 6.75 -51.93 -0.35 0.74 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.37 9.77 6.63 -40.82 -0.27 9.49 16 36 H 0.25 7.94 6.77 -40.82 -0.28 7.66 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.13 2.03 4.08 -62.57 -0.26 1.77 16 41 H 0.22 0.99 7.53 -52.49 -0.40 0.59 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.60 8.02 -51.93 -0.42 0.19 16 48 H 0.07 0.16 7.34 -51.93 -0.38 -0.22 16 49 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 50 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -35.84 390.50 -9.55 -45.39 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.24 Total: 7.44 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.27 Total: 0.41 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: 0.09 Total: -70.58 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.09 Total: 21.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.84 -9.55 -45.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.688 kcal (2) G-P(sol) polarization free energy of solvation -35.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.37 seconds