Wall clock time and date at job start Wed Apr 1 2020 00:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.69974 * 2 1 4 4 C 1.53196 * 109.58481 * 239.64354 * 2 1 3 5 5 C 1.53038 * 109.31095 * 185.57856 * 4 2 1 6 6 H 1.09007 * 109.46412 * 301.36097 * 5 4 2 7 7 N 1.46497 * 109.46049 * 181.38809 * 5 4 2 8 8 C 1.36939 * 119.99910 * 154.97517 * 7 5 4 9 9 H 1.07997 * 120.00133 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99668 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00123 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47149 * 60.00018 * 12 10 8 14 14 H 1.48497 * 109.47235 * 299.99514 * 12 10 8 15 15 H 1.48505 * 109.47091 * 179.97438 * 12 10 8 16 16 C 1.53046 * 109.52922 * 61.36940 * 5 4 2 17 17 C 1.53194 * 109.31164 * 298.61724 * 16 5 4 18 18 N 1.46924 * 108.76636 * 54.65569 * 17 16 5 19 19 C 1.34766 * 120.63496 * 126.36202 * 18 17 16 20 20 O 1.21562 * 120.00437 * 186.47953 * 19 18 17 21 21 C 1.47872 * 120.00127 * 6.47788 * 19 18 17 22 22 N 1.34553 * 126.04481 * 7.18692 * 21 19 18 23 23 C 1.30870 * 107.26915 * 179.89214 * 22 21 19 24 24 N 1.34581 * 107.62488 * 0.36735 * 23 22 21 25 25 C 1.46505 * 125.74877 * 179.73008 * 24 23 22 26 26 C 1.52995 * 109.46851 * 75.01707 * 25 24 23 27 27 C 1.53001 * 109.46891 * 195.01612 * 25 24 23 28 28 C 1.52999 * 109.47119 * 315.01749 * 25 24 23 29 29 N 1.28850 * 108.50453 * 359.76493 * 24 23 22 30 30 H 1.08993 * 109.47007 * 183.11345 * 1 2 3 31 31 H 1.09000 * 109.47056 * 303.11737 * 1 2 3 32 32 H 1.09005 * 109.46937 * 63.10884 * 1 2 3 33 33 H 1.09002 * 109.49631 * 65.63181 * 4 2 1 34 34 H 1.08998 * 109.49338 * 305.52849 * 4 2 1 35 35 H 0.96998 * 119.99882 * 334.96444 * 7 5 4 36 36 H 0.97001 * 120.00127 * 0.02562 * 11 10 8 37 37 H 1.08998 * 109.49155 * 58.57835 * 16 5 4 38 38 H 1.08999 * 109.49931 * 178.67803 * 16 5 4 39 39 H 1.08999 * 109.59542 * 294.86304 * 17 16 5 40 40 H 1.09001 * 109.69914 * 174.50132 * 17 16 5 41 41 H 1.08001 * 126.18507 * 180.13010 * 23 22 21 42 42 H 1.08997 * 109.47753 * 60.00128 * 26 25 24 43 43 H 1.09003 * 109.47063 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.47292 * 299.99872 * 26 25 24 45 45 H 1.09004 * 109.47241 * 60.00457 * 27 25 24 46 46 H 1.09003 * 109.46602 * 180.02562 * 27 25 24 47 47 H 1.09003 * 109.47259 * 299.99912 * 27 25 24 48 48 H 1.08998 * 109.46930 * 59.99621 * 28 25 24 49 49 H 1.08996 * 109.46982 * 180.02562 * 28 25 24 50 50 H 1.09003 * 109.46723 * 300.00194 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1702 6 1 4.0062 0.1473 -1.0991 7 7 4.0652 -1.5158 -2.3754 8 6 5.3495 -1.2983 -2.7977 9 1 5.9954 -0.6343 -2.2425 10 6 5.8213 -1.9315 -3.9394 11 7 5.0343 -2.7411 -4.6158 12 14 7.5730 -1.6344 -4.5159 13 1 8.5218 -2.0557 -3.4541 14 1 7.7613 -0.1897 -4.8032 15 1 7.8288 -2.4221 -5.7486 16 6 3.9566 -1.6659 0.0635 17 6 3.4650 -0.9469 1.3238 18 7 2.0225 -0.6996 1.1945 19 6 1.1674 -1.1069 2.1531 20 8 -0.0317 -1.0029 1.9823 21 6 1.6875 -1.6804 3.4129 22 7 2.9791 -1.7282 3.7872 23 6 3.0225 -2.3071 4.9601 24 7 1.7607 -2.6233 5.3054 25 6 1.3544 -3.2925 6.5438 26 6 1.4295 -2.3017 7.7071 27 6 -0.0809 -3.8028 6.4003 28 6 2.2901 -4.4717 6.8170 29 7 0.9704 -2.2391 4.3632 30 1 -0.3633 -1.0261 0.0558 31 1 -0.3633 0.5615 0.8607 32 1 -0.3633 0.4648 -0.9166 33 1 1.7661 -0.1668 -2.1369 34 1 1.6029 -1.7253 -1.2913 35 1 3.4850 -2.1120 -2.8741 36 1 4.1245 -2.8952 -4.3166 37 1 3.4978 -2.6529 0.0051 38 1 5.0409 -1.7700 0.1038 39 1 3.9903 0.0020 1.4316 40 1 3.6520 -1.5696 2.1986 41 1 3.9107 -2.4999 5.5435 42 1 0.7629 -1.4615 7.5126 43 1 1.1276 -2.7996 8.6285 44 1 2.4520 -1.9380 7.8093 45 1 -0.1344 -4.5087 5.5715 46 1 -0.3833 -4.3003 7.3218 47 1 -0.7475 -2.9626 6.2057 48 1 3.3126 -4.1081 6.9190 49 1 1.9875 -4.9698 7.7380 50 1 2.2366 -5.1775 5.9880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044744645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:27 Heat of formation + Delta-G solvation = 70.499725 kcal Electronic energy + Delta-G solvation = -30018.710052 eV Core-core repulsion = 26083.439261 eV Total energy + Delta-G solvation = -3935.270791 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.59417 -41.51557 -38.87395 -38.26314 -36.49450 -34.45579 -33.79092 -33.36895 -31.87240 -30.78731 -28.59972 -28.40921 -28.30894 -26.18207 -25.59202 -24.69946 -23.85312 -22.90896 -21.73684 -21.10160 -20.46801 -19.33848 -18.24472 -17.69836 -17.55303 -17.26261 -16.81298 -16.29849 -16.10200 -15.83574 -15.43101 -15.22515 -15.07120 -14.97110 -14.76040 -14.70516 -14.09479 -13.91660 -13.54018 -13.41978 -13.29771 -13.23909 -13.21322 -13.01184 -12.78710 -12.74384 -12.62413 -12.44133 -12.36664 -12.11341 -12.09348 -11.98568 -11.87336 -11.65966 -11.46521 -11.19365 -11.12921 -10.71269 -10.56087 -10.42322 -9.68640 -9.10306 -8.36834 -5.30695 0.30266 1.05647 1.14482 1.59440 1.70020 1.81883 1.85916 2.20988 2.73234 2.95843 3.21886 3.42375 3.57903 3.62273 3.65577 3.76413 3.79930 3.86039 4.00651 4.05503 4.20443 4.27197 4.49092 4.52368 4.53704 4.57980 4.59445 4.62943 4.67776 4.75697 4.77765 4.78784 4.79990 4.93579 4.94822 5.01802 5.06231 5.11127 5.15079 5.20382 5.22766 5.33557 5.41507 5.44177 5.59775 5.62580 5.82737 6.24082 6.50573 6.83338 7.10565 7.11259 8.00588 8.14027 9.14992 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016667 B = 0.002673 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.604180 B =10471.172840 C =11554.203168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.151 3.849 3 H 0.092 0.908 4 C -0.123 4.123 5 C 0.178 3.822 6 H 0.048 0.952 7 N -0.750 5.750 8 C -0.324 4.324 9 H 0.070 0.930 10 C -0.109 4.109 11 N -0.979 5.979 12 Si 1.128 2.872 13 H -0.276 1.276 14 H -0.277 1.277 15 H -0.296 1.296 16 C -0.133 4.133 17 C 0.091 3.909 18 N -0.583 5.583 19 C 0.606 3.394 20 O -0.547 6.547 21 C 0.116 3.884 22 N -0.501 5.501 23 C 0.201 3.799 24 N -0.286 5.286 25 C 0.157 3.843 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.157 4.157 29 N -0.270 5.270 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.356 0.644 36 H 0.242 0.758 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.144 0.856 41 H 0.270 0.730 42 H 0.047 0.953 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.110 0.890 47 H 0.052 0.948 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 0.077 31.687 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.162 4.162 5 C 0.070 3.930 6 H 0.066 0.934 7 N -0.391 5.391 8 C -0.455 4.455 9 H 0.088 0.912 10 C -0.300 4.300 11 N -0.627 5.627 12 Si 0.953 3.047 13 H -0.202 1.202 14 H -0.203 1.203 15 H -0.222 1.222 16 C -0.174 4.174 17 C -0.031 4.031 18 N -0.315 5.315 19 C 0.392 3.608 20 O -0.424 6.424 21 C -0.162 4.162 22 N -0.227 5.227 23 C -0.093 4.093 24 N -0.082 5.082 25 C 0.077 3.923 26 C -0.213 4.213 27 C -0.206 4.206 28 C -0.215 4.215 29 N -0.110 5.110 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.188 0.812 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.286 0.714 42 H 0.066 0.934 43 H 0.132 0.868 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.128 0.872 47 H 0.071 0.929 48 H 0.109 0.891 49 H 0.133 0.867 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.457 -0.014 30.339 30.826 hybrid contribution -1.349 -0.104 0.534 1.454 sum -6.806 -0.119 30.873 31.614 Atomic orbital electron populations 1.22070 0.92252 1.02540 1.01306 1.21386 0.95803 0.95504 0.82461 0.88977 1.22158 0.95698 1.00471 0.97847 1.20366 0.92217 0.94651 0.85758 0.93362 1.42676 1.12298 1.55073 1.29015 1.20383 0.90629 1.24910 1.09599 0.91238 1.27226 1.09589 0.97661 0.95478 1.70989 1.08082 1.40825 1.42848 0.82627 0.70302 0.76164 0.75623 1.20222 1.20266 1.22194 1.22394 1.00667 0.98719 0.95641 1.22704 0.77685 1.02373 1.00373 1.47954 1.08459 1.55990 1.19104 1.16717 0.85177 0.77700 0.81254 1.90837 1.15692 1.56482 1.79352 1.23612 0.87954 1.06782 0.97867 1.70974 1.18106 1.21576 1.12041 1.27344 0.91704 0.96839 0.93408 1.48188 1.05247 1.39357 1.15413 1.21667 0.98099 0.93974 0.78597 1.22278 1.04034 0.98186 0.96760 1.22014 0.93042 1.01584 1.03966 1.22315 0.99621 0.95120 1.04433 1.74206 1.23263 1.14712 0.98834 0.93084 0.91722 0.91839 0.90513 0.93311 0.81229 0.94781 0.94649 0.91854 0.90612 0.83917 0.71412 0.93393 0.86835 0.89915 0.93264 0.87170 0.92877 0.89070 0.86731 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 7.59 71.98 0.55 -3.32 16 2 C 0.15 4.79 3.49 44.98 0.16 4.95 16 3 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 4 C -0.12 -4.45 4.84 30.67 0.15 -4.31 16 5 C 0.18 7.40 2.73 45.02 0.12 7.53 16 6 H 0.05 2.02 8.08 -2.38 -0.02 2.00 16 7 N -0.75 -39.09 5.12 -322.80 -1.65 -40.74 16 8 C -0.32 -18.44 9.93 84.03 0.83 -17.61 16 9 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 10 C -0.11 -6.45 5.50 84.86 0.47 -5.98 16 11 N -0.98 -62.94 13.70 21.65 0.30 -62.65 16 12 Si 1.13 52.62 29.92 68.60 2.05 54.67 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 16 C -0.13 -5.06 5.66 30.67 0.17 -4.89 16 17 C 0.09 2.84 6.11 86.36 0.53 3.37 16 18 N -0.58 -19.07 2.97 -798.35 -2.37 -21.44 16 19 C 0.61 21.09 7.62 86.80 0.66 21.75 16 20 O -0.55 -21.12 12.49 -3.91 -0.05 -21.17 16 21 C 0.12 3.56 7.65 137.13 1.05 4.60 16 22 N -0.50 -12.45 7.85 -193.03 -1.51 -13.97 16 23 C 0.20 3.18 11.71 180.30 2.11 5.29 16 24 N -0.29 -5.06 3.17 -311.59 -0.99 -6.05 16 25 C 0.16 1.42 1.23 3.60 0.00 1.43 16 26 C -0.15 -0.75 8.72 71.98 0.63 -0.12 16 27 C -0.15 -1.69 8.04 71.98 0.58 -1.11 16 28 C -0.16 -0.52 8.28 71.98 0.60 0.08 16 29 N -0.27 -7.48 11.10 -52.43 -0.58 -8.06 16 30 H 0.05 1.79 6.75 -2.39 -0.02 1.78 16 31 H 0.06 2.07 6.75 -2.39 -0.02 2.05 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.36 19.72 6.63 -92.71 -0.61 19.11 16 36 H 0.24 15.61 6.77 -92.71 -0.63 14.98 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.14 4.28 4.08 -23.40 -0.10 4.18 16 41 H 0.27 1.11 7.53 -2.91 -0.02 1.09 16 42 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 43 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.05 0.86 8.02 -2.39 -0.02 0.84 16 48 H 0.09 -0.03 7.34 -2.39 -0.02 -0.05 16 49 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -81.04 390.50 4.18 -76.86 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.38 Total: 30.87 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 8.61 Total: 11.67 kcal Atomic # 7 Polarization: -146.09 SS G_CDS: -6.81 Total: -152.90 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 2.05 Total: 54.67 kcal Total: -81.04 4.18 -76.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044744645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.363 kcal (2) G-P(sol) polarization free energy of solvation -81.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds