Wall clock time and date at job start Wed Apr 1 2020 01:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90596 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.34780 * 125.65139 * 155.80015 * 5 4 2 7 7 O 1.21566 * 119.99625 * 359.97438 * 6 5 4 8 8 C 1.47710 * 120.00485 * 179.97438 * 6 5 4 9 9 C 1.41494 * 126.51946 * 179.71180 * 8 6 5 10 10 C 1.35369 * 105.50206 * 179.89779 * 9 8 6 11 11 N 1.35030 * 107.23009 * 0.35758 * 10 9 8 12 12 C 1.46494 * 124.88861 * 179.76251 * 11 10 9 13 13 C 1.53003 * 109.47418 * 125.01938 * 12 11 10 14 14 N 1.46899 * 109.47304 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99535 * 66.05126 * 14 13 12 16 16 C 1.46899 * 111.00132 * 190.00151 * 14 13 12 17 17 N 1.28471 * 110.22843 * 359.76167 * 11 10 9 18 18 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 19 19 C 1.54321 * 107.26791 * 1.06162 * 18 5 4 20 20 H 1.08997 * 110.71887 * 140.73107 * 19 18 5 21 21 N 1.46499 * 110.72306 * 263.82936 * 19 18 5 22 22 C 1.36944 * 120.00006 * 273.55092 * 21 19 18 23 23 H 1.08004 * 119.99697 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00087 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00181 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99831 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47168 * 90.00162 * 26 24 22 28 28 H 1.48500 * 109.47185 * 209.99656 * 26 24 22 29 29 H 1.48493 * 109.47465 * 329.99895 * 26 24 22 30 30 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 33 33 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 34 34 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 35 35 H 1.07995 * 127.24853 * 0.02562 * 9 8 6 36 36 H 1.07998 * 126.38341 * 180.15511 * 10 9 8 37 37 H 1.08997 * 109.47603 * 245.02359 * 12 11 10 38 38 H 1.09001 * 109.47027 * 5.02759 * 12 11 10 39 39 H 1.08997 * 109.47077 * 300.00743 * 13 12 11 40 40 H 1.09003 * 109.46722 * 60.00028 * 13 12 11 41 41 H 1.09001 * 109.47424 * 59.99791 * 15 14 13 42 42 H 1.09002 * 109.46595 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.46976 * 299.99597 * 15 14 13 44 44 H 1.09006 * 109.46719 * 59.99830 * 16 14 13 45 45 H 1.08994 * 109.47342 * 180.02562 * 16 14 13 46 46 H 1.09003 * 109.47063 * 300.00730 * 16 14 13 47 47 H 1.08998 * 109.88266 * 120.47537 * 18 5 4 48 48 H 1.09000 * 109.88221 * 241.64354 * 18 5 4 49 49 H 0.97000 * 120.00326 * 93.54571 * 21 19 18 50 50 H 0.96997 * 120.00069 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4280 -1.2429 0.7758 6 6 4.4478 -1.5592 1.5984 7 8 4.2990 -1.4950 2.8033 8 6 5.7461 -1.9836 1.0361 9 6 6.9042 -2.3395 1.7669 10 6 7.8356 -2.6562 0.8371 11 7 7.2639 -2.4891 -0.3748 12 6 7.9341 -2.7211 -1.6566 13 6 7.1156 -3.7105 -2.4885 14 7 7.7879 -3.9436 -3.7736 15 6 9.0723 -4.6296 -3.5788 16 6 6.9228 -4.6966 -4.6915 17 7 6.0476 -2.0974 -0.2419 18 6 3.4707 -1.2757 -0.6935 19 6 2.0901 -0.8106 -1.2023 20 1 2.1970 -0.1761 -2.0821 21 7 1.2316 -1.9608 -1.4964 22 6 1.2886 -2.5611 -2.7259 23 1 1.9661 -2.1863 -3.4789 24 6 0.4756 -3.6512 -3.0044 25 7 -0.3496 -4.1082 -2.0865 26 14 0.5528 -4.4696 -4.6817 27 1 1.5712 -5.5501 -4.6589 28 1 -0.7746 -5.0475 -5.0121 29 1 0.9232 -3.4619 -5.7076 30 1 -0.3633 0.4752 0.9112 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 1.4520 -1.6705 1.4023 34 1 2.1542 -0.1726 2.0841 35 1 7.0200 -2.3570 2.8405 36 1 8.8483 -2.9788 1.0287 37 1 8.0224 -1.7783 -2.1964 38 1 8.9279 -3.1319 -1.4779 39 1 7.0273 -4.6533 -1.9486 40 1 6.1218 -3.2998 -2.6672 41 1 8.9010 -5.5910 -3.0945 42 1 9.5487 -4.7902 -4.5460 43 1 9.7199 -4.0171 -2.9516 44 1 6.0077 -4.1327 -4.8729 45 1 7.4451 -4.8557 -5.6348 46 1 6.6736 -5.6603 -4.2474 47 1 4.2461 -0.6013 -1.0569 48 1 3.6693 -2.2912 -1.0360 49 1 0.6229 -2.2972 -0.8202 50 1 -0.9175 -4.8702 -2.2810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054654040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:09 Heat of formation + Delta-G solvation = 79.435555 kcal Electronic energy + Delta-G solvation = -30101.078282 eV Core-core repulsion = 26166.194978 eV Total energy + Delta-G solvation = -3934.883304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.59532 -39.46484 -37.95162 -37.35719 -33.90136 -33.68276 -32.30897 -30.67081 -30.39627 -29.35293 -27.87976 -27.61085 -26.46196 -24.86690 -23.81794 -22.83389 -21.67816 -21.52243 -20.81603 -19.17670 -18.99596 -17.57822 -17.23605 -16.47342 -16.25138 -15.75644 -15.62288 -15.17272 -15.07448 -14.54001 -14.44841 -14.23264 -13.87356 -13.62793 -13.40388 -13.17737 -12.96617 -12.85678 -12.72091 -12.50118 -12.27044 -11.99814 -11.92563 -11.88656 -11.82789 -11.46826 -11.36088 -11.07313 -10.91364 -10.79203 -10.60017 -10.34185 -10.22045 -9.90073 -9.74650 -9.58871 -9.19262 -9.02060 -8.96027 -8.72812 -8.09332 -7.00571 -5.80054 -3.08911 1.77781 2.20077 2.35450 3.39095 3.42134 3.44801 3.46845 3.70271 3.75072 4.20773 4.55244 4.58751 4.69443 4.74989 4.85191 4.93575 4.99839 5.08608 5.22895 5.29571 5.34003 5.34919 5.43863 5.49990 5.52813 5.60879 5.69759 5.71382 5.75411 5.79853 5.80831 5.91261 6.01901 6.08947 6.30202 6.35367 6.38978 6.43250 6.51430 6.59195 6.65342 6.69061 6.75473 6.82378 6.94843 7.02113 7.67643 7.92611 8.03303 8.38297 8.56628 9.49811 10.06051 10.41067 11.42444 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007225 B = 0.005053 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3874.731285 B = 5540.335248 C = 8808.497348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.593 5.593 6 C 0.612 3.388 7 O -0.551 6.551 8 C -0.008 4.008 9 C -0.181 4.181 10 C -0.025 4.025 11 N -0.285 5.285 12 C 0.127 3.873 13 C 0.040 3.960 14 N -0.543 5.543 15 C 0.016 3.984 16 C 0.024 3.976 17 N -0.242 5.242 18 C 0.086 3.914 19 C 0.169 3.831 20 H 0.069 0.931 21 N -0.712 5.712 22 C -0.239 4.239 23 H 0.071 0.929 24 C -0.010 4.010 25 N -0.930 5.930 26 Si 0.904 3.096 27 H -0.292 1.292 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.043 0.957 40 H 0.100 0.900 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.029 0.971 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.386 0.614 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.408 3.389 0.581 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.096 0.904 4 C -0.007 4.007 5 N -0.325 5.325 6 C 0.399 3.601 7 O -0.429 6.429 8 C -0.169 4.169 9 C -0.209 4.209 10 C -0.167 4.167 11 N -0.074 5.074 12 C 0.006 3.994 13 C -0.089 4.089 14 N -0.267 5.267 15 C -0.132 4.132 16 C -0.124 4.124 17 N -0.078 5.078 18 C -0.040 4.040 19 C 0.057 3.943 20 H 0.086 0.914 21 N -0.354 5.354 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.206 4.206 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.219 1.219 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.177 0.823 36 H 0.195 0.805 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.061 0.939 40 H 0.118 0.882 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.222 0.778 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.093 3.891 -0.342 18.509 hybrid contribution 0.253 -1.761 0.367 1.816 sum 18.346 2.130 0.025 18.469 Atomic orbital electron populations 1.21565 0.93417 1.03462 1.00580 1.22658 0.96867 0.98451 0.95422 0.90362 1.22270 0.82618 0.98429 0.97341 1.48251 1.11459 1.64431 1.08345 1.16519 0.81225 0.77372 0.85029 1.90744 1.82695 1.55578 1.13872 1.21917 0.96465 1.08928 0.89551 1.21726 0.91757 1.06793 1.00620 1.22799 1.01018 1.08406 0.84451 1.45566 1.08175 1.46720 1.06948 1.21926 0.95059 1.02068 0.80310 1.22391 0.99205 0.97951 0.89356 1.61906 1.04773 1.48570 1.11472 1.22520 0.91653 0.96884 1.02187 1.22420 0.97663 0.96455 0.95904 1.73777 0.97772 1.15771 1.20460 1.23227 1.00268 1.02720 0.77769 1.21316 0.88636 0.89760 0.94567 0.91350 1.42469 1.45374 1.32766 1.14763 1.19216 1.18099 1.09139 0.90574 0.91085 1.24716 0.99153 0.98987 0.97783 1.69652 1.27505 1.27511 1.33179 0.86235 0.76831 0.79424 0.83960 1.21929 1.21820 1.20677 0.93628 0.92327 0.90861 0.91114 0.91165 0.82255 0.80479 0.87985 0.88234 0.93892 0.88152 0.95373 0.90987 0.91362 0.90373 0.91022 0.95228 0.92411 0.90189 0.77768 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.99 37.16 0.33 -1.81 16 2 C -0.11 -1.88 3.52 -88.31 -0.31 -2.19 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.12 2.05 6.35 -2.53 -0.02 2.03 16 5 N -0.59 -11.21 3.33 -171.69 -0.57 -11.78 16 6 C 0.61 11.94 7.86 -12.39 -0.10 11.84 16 7 O -0.55 -11.81 17.18 5.31 0.09 -11.72 16 8 C -0.01 -0.14 6.98 -82.77 -0.58 -0.72 16 9 C -0.18 -2.52 10.81 -39.37 -0.43 -2.94 16 10 C -0.02 -0.27 11.40 -17.17 -0.20 -0.46 16 11 N -0.29 -3.51 3.41 -61.33 -0.21 -3.72 16 12 C 0.13 1.16 6.32 -4.04 -0.03 1.14 16 13 C 0.04 0.43 5.06 -3.82 -0.02 0.42 16 14 N -0.54 -5.33 5.02 -251.25 -1.26 -6.59 16 15 C 0.02 0.11 9.32 60.07 0.56 0.67 16 16 C 0.02 0.24 9.57 60.06 0.57 0.81 16 17 N -0.24 -3.85 9.19 33.42 0.31 -3.54 16 18 C 0.09 1.61 5.28 -3.06 -0.02 1.60 16 19 C 0.17 3.26 3.38 -65.94 -0.22 3.04 16 20 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 21 N -0.71 -16.92 4.60 -51.50 -0.24 -17.16 16 22 C -0.24 -6.31 9.98 -15.06 -0.15 -6.46 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 26 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.39 6.18 -51.93 -0.32 1.07 16 33 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 34 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 35 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.60 6.45 -51.93 -0.34 0.27 16 39 H 0.04 0.51 8.12 -51.93 -0.42 0.08 16 40 H 0.10 1.37 8.01 -51.93 -0.42 0.96 16 41 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 43 H 0.07 0.38 6.47 -51.93 -0.34 0.05 16 44 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 45 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 1.02 7.66 -51.93 -0.40 0.62 16 48 H 0.08 1.72 7.67 -51.93 -0.40 1.32 16 49 H 0.39 9.85 6.03 -40.82 -0.25 9.61 16 50 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -32.66 403.21 -9.11 -41.77 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -8.32 Total: 10.02 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -0.68 Total: 6.58 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.25 Total: -69.46 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.66 -9.11 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054654040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.204 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds