Wall clock time and date at job start Wed Apr 1 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90596 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.34780 * 125.65139 * 155.80015 * 5 4 2 7 7 O 1.21566 * 119.99625 * 359.97438 * 6 5 4 8 8 C 1.47710 * 120.00485 * 179.97438 * 6 5 4 9 9 C 1.41494 * 126.51946 * 179.71180 * 8 6 5 10 10 C 1.35369 * 105.50206 * 179.89779 * 9 8 6 11 11 N 1.35030 * 107.23009 * 0.35758 * 10 9 8 12 12 C 1.46494 * 124.88861 * 179.76251 * 11 10 9 13 13 C 1.53003 * 109.47418 * 125.01938 * 12 11 10 14 14 N 1.46899 * 109.47304 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99535 * 66.05126 * 14 13 12 16 16 C 1.46899 * 111.00132 * 190.00151 * 14 13 12 17 17 N 1.28471 * 110.22843 * 359.76167 * 11 10 9 18 18 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 19 19 C 1.54321 * 107.26791 * 1.06162 * 18 5 4 20 20 H 1.08997 * 110.71887 * 140.73107 * 19 18 5 21 21 N 1.46499 * 110.72306 * 263.82936 * 19 18 5 22 22 C 1.36944 * 120.00006 * 273.55092 * 21 19 18 23 23 H 1.08004 * 119.99697 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00087 * 179.97438 * 22 21 19 25 25 N 1.31618 * 120.00181 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99831 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47168 * 90.00162 * 26 24 22 28 28 H 1.48500 * 109.47185 * 209.99656 * 26 24 22 29 29 H 1.48493 * 109.47465 * 329.99895 * 26 24 22 30 30 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 33 33 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 34 34 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 35 35 H 1.07995 * 127.24853 * 0.02562 * 9 8 6 36 36 H 1.07998 * 126.38341 * 180.15511 * 10 9 8 37 37 H 1.08997 * 109.47603 * 245.02359 * 12 11 10 38 38 H 1.09001 * 109.47027 * 5.02759 * 12 11 10 39 39 H 1.08997 * 109.47077 * 300.00743 * 13 12 11 40 40 H 1.09003 * 109.46722 * 60.00028 * 13 12 11 41 41 H 1.09001 * 109.47424 * 59.99791 * 15 14 13 42 42 H 1.09002 * 109.46595 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.46976 * 299.99597 * 15 14 13 44 44 H 1.09006 * 109.46719 * 59.99830 * 16 14 13 45 45 H 1.08994 * 109.47342 * 180.02562 * 16 14 13 46 46 H 1.09003 * 109.47063 * 300.00730 * 16 14 13 47 47 H 1.08998 * 109.88266 * 120.47537 * 18 5 4 48 48 H 1.09000 * 109.88221 * 241.64354 * 18 5 4 49 49 H 0.97000 * 120.00326 * 93.54571 * 21 19 18 50 50 H 0.96997 * 120.00069 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4280 -1.2429 0.7758 6 6 4.4478 -1.5592 1.5984 7 8 4.2990 -1.4950 2.8033 8 6 5.7461 -1.9836 1.0361 9 6 6.9042 -2.3395 1.7669 10 6 7.8356 -2.6562 0.8371 11 7 7.2639 -2.4891 -0.3748 12 6 7.9341 -2.7211 -1.6566 13 6 7.1156 -3.7105 -2.4885 14 7 7.7879 -3.9436 -3.7736 15 6 9.0723 -4.6296 -3.5788 16 6 6.9228 -4.6966 -4.6915 17 7 6.0476 -2.0974 -0.2419 18 6 3.4707 -1.2757 -0.6935 19 6 2.0901 -0.8106 -1.2023 20 1 2.1970 -0.1761 -2.0821 21 7 1.2316 -1.9608 -1.4964 22 6 1.2886 -2.5611 -2.7259 23 1 1.9661 -2.1863 -3.4789 24 6 0.4756 -3.6512 -3.0044 25 7 -0.3496 -4.1082 -2.0865 26 14 0.5528 -4.4696 -4.6817 27 1 1.5712 -5.5501 -4.6589 28 1 -0.7746 -5.0475 -5.0121 29 1 0.9232 -3.4619 -5.7076 30 1 -0.3633 0.4752 0.9112 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 1.4520 -1.6705 1.4023 34 1 2.1542 -0.1726 2.0841 35 1 7.0200 -2.3570 2.8405 36 1 8.8483 -2.9788 1.0287 37 1 8.0224 -1.7783 -2.1964 38 1 8.9279 -3.1319 -1.4779 39 1 7.0273 -4.6533 -1.9486 40 1 6.1218 -3.2998 -2.6672 41 1 8.9010 -5.5910 -3.0945 42 1 9.5487 -4.7902 -4.5460 43 1 9.7199 -4.0171 -2.9516 44 1 6.0077 -4.1327 -4.8729 45 1 7.4451 -4.8557 -5.6348 46 1 6.6736 -5.6603 -4.2474 47 1 4.2461 -0.6013 -1.0569 48 1 3.6693 -2.2912 -1.0360 49 1 0.6229 -2.2972 -0.8202 50 1 -0.9175 -4.8702 -2.2810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054654040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:08 Heat of formation + Delta-G solvation = 56.693328 kcal Electronic energy + Delta-G solvation = -30102.064459 eV Core-core repulsion = 26166.194978 eV Total energy + Delta-G solvation = -3935.869481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.64080 -40.96558 -38.99198 -38.65399 -35.71784 -34.70348 -33.86429 -32.27534 -31.65745 -30.34219 -29.32288 -28.53664 -27.77611 -25.96085 -25.69137 -24.09995 -22.94150 -22.45149 -21.82331 -20.70386 -20.28690 -19.40976 -18.39176 -17.78445 -17.34779 -17.17892 -16.54761 -16.38572 -16.37313 -16.05874 -15.75127 -15.38904 -15.31528 -14.81520 -14.63676 -14.44290 -14.35190 -14.12106 -13.99787 -13.50564 -13.41141 -13.33642 -13.08240 -13.02561 -12.89702 -12.78368 -12.70188 -12.58019 -12.34305 -12.19076 -12.14106 -11.99865 -11.69204 -11.45471 -11.40821 -11.24747 -10.93701 -10.26304 -10.07776 -9.62678 -9.50182 -9.00429 -7.92066 -5.19933 0.54077 1.20084 1.44467 1.46361 1.47289 1.55982 2.04292 2.35645 2.56568 2.90599 3.30155 3.39471 3.50987 3.75068 3.83632 3.91004 3.93697 3.97708 4.05647 4.09732 4.20204 4.25547 4.41209 4.43573 4.57635 4.59422 4.61526 4.66102 4.72301 4.73099 4.76986 4.78090 4.81677 4.89681 4.96670 4.99963 5.01815 5.03102 5.20925 5.24898 5.32073 5.43591 5.54317 5.60888 5.78997 5.89084 5.99201 6.29313 6.47285 6.83690 7.13336 7.36578 8.10552 8.34702 9.31441 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.007225 B = 0.005053 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3874.731285 B = 5540.335248 C = 8808.497348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.110 0.890 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.604 3.396 7 O -0.580 6.580 8 C -0.045 4.045 9 C -0.201 4.201 10 C 0.006 3.994 11 N -0.280 5.280 12 C 0.128 3.872 13 C 0.046 3.954 14 N -0.546 5.546 15 C 0.013 3.987 16 C 0.022 3.978 17 N -0.268 5.268 18 C 0.107 3.893 19 C 0.161 3.839 20 H 0.079 0.921 21 N -0.721 5.721 22 C -0.231 4.231 23 H 0.078 0.922 24 C -0.073 4.073 25 N -0.969 5.969 26 Si 0.965 3.035 27 H -0.293 1.293 28 H -0.299 1.299 29 H -0.265 1.265 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.167 0.833 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.375 0.625 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.724 4.360 -0.226 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.117 4.117 3 H 0.128 0.872 4 C -0.008 4.008 5 N -0.329 5.329 6 C 0.393 3.607 7 O -0.460 6.460 8 C -0.204 4.204 9 C -0.229 4.229 10 C -0.137 4.137 11 N -0.069 5.069 12 C 0.008 3.992 13 C -0.083 4.083 14 N -0.271 5.271 15 C -0.134 4.134 16 C -0.126 4.126 17 N -0.105 5.105 18 C -0.019 4.019 19 C 0.051 3.949 20 H 0.097 0.903 21 N -0.361 5.361 22 C -0.363 4.363 23 H 0.096 0.904 24 C -0.265 4.265 25 N -0.620 5.620 26 Si 0.795 3.205 27 H -0.221 1.221 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.184 0.816 36 H 0.249 0.751 37 H 0.127 0.873 38 H 0.162 0.838 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.040 0.960 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.210 0.790 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.443 4.907 -1.172 22.028 hybrid contribution -0.647 -2.053 0.610 2.237 sum 20.796 2.854 -0.561 20.998 Atomic orbital electron populations 1.21490 0.93060 1.01638 1.02158 1.22628 0.97012 0.99161 0.92908 0.87239 1.22306 0.82021 0.97986 0.98513 1.48359 1.11828 1.64479 1.08274 1.16991 0.82183 0.76732 0.84832 1.90701 1.83485 1.56869 1.14917 1.21810 0.96408 1.11365 0.90799 1.21980 0.91461 1.07852 1.01628 1.23516 1.02252 1.05196 0.82717 1.45921 1.07251 1.45135 1.08605 1.22206 0.96012 1.02070 0.78874 1.22216 0.98183 0.97669 0.90244 1.61949 1.05490 1.49090 1.10538 1.22649 0.90336 0.97015 1.03427 1.22424 0.97469 0.95711 0.96992 1.73700 0.99843 1.16885 1.20035 1.22872 1.00095 1.01033 0.77861 1.21553 0.88306 0.88847 0.96244 0.90319 1.42606 1.45876 1.33892 1.13763 1.19593 1.16770 1.08483 0.91431 0.90364 1.25455 0.99706 1.00243 1.01086 1.69816 1.28947 1.28175 1.35094 0.85255 0.76112 0.78550 0.80591 1.22088 1.22590 1.18968 0.90867 0.91989 0.94196 0.93344 0.89873 0.81595 0.75109 0.87296 0.83800 0.95128 0.91881 0.95572 0.89892 0.89000 0.92375 0.89075 0.96020 0.90959 0.93426 0.79046 0.94277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 8.99 71.98 0.65 -3.34 16 2 C -0.10 -3.12 3.52 -9.30 -0.03 -3.16 16 3 H 0.11 2.90 8.14 -2.38 -0.02 2.89 16 4 C 0.11 4.07 6.35 86.85 0.55 4.63 16 5 N -0.60 -23.08 3.33 -815.37 -2.71 -25.80 16 6 C 0.60 24.17 7.86 86.75 0.68 24.85 16 7 O -0.58 -25.51 17.18 -3.92 -0.07 -25.58 16 8 C -0.05 -1.56 6.98 42.45 0.30 -1.26 16 9 C -0.20 -5.33 10.81 22.41 0.24 -5.09 16 10 C 0.01 0.10 11.40 83.54 0.95 1.05 16 11 N -0.28 -6.26 3.41 -347.96 -1.19 -7.44 16 12 C 0.13 1.94 6.32 86.38 0.55 2.49 16 13 C 0.05 0.97 5.06 86.30 0.44 1.41 16 14 N -0.55 -9.81 5.02 -948.83 -4.76 -14.57 16 15 C 0.01 0.15 9.32 127.69 1.19 1.34 16 16 C 0.02 0.44 9.57 127.69 1.22 1.66 16 17 N -0.27 -8.42 9.19 -48.18 -0.44 -8.87 16 18 C 0.11 4.08 5.28 86.73 0.46 4.54 16 19 C 0.16 6.20 3.38 46.28 0.16 6.36 16 20 H 0.08 2.90 8.12 -2.39 -0.02 2.88 16 21 N -0.72 -35.17 4.60 -316.85 -1.46 -36.63 16 22 C -0.23 -12.40 9.98 84.03 0.84 -11.56 16 23 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 25 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 26 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 29 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.55 6.18 -2.39 -0.01 1.53 16 33 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 34 H 0.08 2.75 8.03 -2.39 -0.02 2.73 16 35 H 0.17 4.02 8.06 -2.91 -0.02 3.99 16 36 H 0.23 1.56 8.06 -2.91 -0.02 1.53 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.14 0.95 6.45 -2.39 -0.02 0.94 16 39 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 40 H 0.06 1.80 8.01 -2.39 -0.02 1.78 16 41 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 43 H 0.09 0.59 6.47 -2.39 -0.02 0.58 16 44 H 0.06 1.35 8.12 -2.38 -0.02 1.33 16 45 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 46 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.07 2.54 7.66 -2.39 -0.02 2.52 16 48 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 49 H 0.38 19.99 6.03 -92.71 -0.56 19.43 16 50 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -75.11 403.21 0.71 -74.40 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.37 Total: 35.39 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 8.65 Total: 20.27 kcal Atomic # 7 Polarization: -141.88 SS G_CDS: -10.28 Total: -152.16 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.07 Total: -25.58 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.11 0.71 -74.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054654040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.093 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds