Wall clock time and date at job start Wed Apr 1 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21572 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.47706 * 120.00012 * 179.97438 * 6 5 4 9 9 C 1.41501 * 126.51436 * 179.71144 * 8 6 5 10 10 C 1.35366 * 105.50099 * 179.90476 * 9 8 6 11 11 N 1.35036 * 107.22795 * 0.35985 * 10 9 8 12 12 C 1.46499 * 124.88167 * 179.76238 * 11 10 9 13 13 C 1.53004 * 109.47137 * 124.97671 * 12 11 10 14 14 N 1.46898 * 109.47591 * 179.97438 * 13 12 11 15 15 C 1.46899 * 111.00211 * 169.99940 * 14 13 12 16 16 C 1.46902 * 110.99996 * 293.95389 * 14 13 12 17 17 N 1.28466 * 110.23213 * 359.76017 * 11 10 9 18 18 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 19 19 C 1.54320 * 107.27576 * 1.05739 * 18 5 4 20 20 H 1.08990 * 110.72081 * 263.83328 * 19 18 5 21 21 N 1.46496 * 110.72131 * 140.55218 * 19 18 5 22 22 C 1.36937 * 120.00105 * 91.48188 * 21 19 18 23 23 H 1.08011 * 119.99816 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00719 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99432 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00509 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46736 * 90.00033 * 26 24 22 28 28 H 1.48500 * 109.47463 * 209.99985 * 26 24 22 29 29 H 1.48496 * 109.47299 * 330.00637 * 26 24 22 30 30 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 31 31 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 32 32 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 33 33 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 34 34 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 35 35 H 1.07996 * 127.25355 * 0.02562 * 9 8 6 36 36 H 1.08008 * 126.39019 * 180.15480 * 10 9 8 37 37 H 1.09000 * 109.47346 * 244.96908 * 12 11 10 38 38 H 1.09000 * 109.47659 * 4.97494 * 12 11 10 39 39 H 1.09004 * 109.46936 * 300.00283 * 13 12 11 40 40 H 1.09000 * 109.46991 * 59.99413 * 13 12 11 41 41 H 1.09002 * 109.46961 * 60.00183 * 15 14 13 42 42 H 1.09004 * 109.46969 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.47126 * 299.99916 * 15 14 13 44 44 H 1.09004 * 109.47212 * 59.99590 * 16 14 13 45 45 H 1.08994 * 109.47440 * 179.97438 * 16 14 13 46 46 H 1.08999 * 109.46785 * 300.00009 * 16 14 13 47 47 H 1.09006 * 109.88301 * 120.47721 * 18 5 4 48 48 H 1.09003 * 109.88253 * 241.48112 * 18 5 4 49 49 H 0.97005 * 120.00849 * 271.48063 * 21 19 18 50 50 H 0.97002 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3004 -1.4996 2.7996 8 6 5.7449 -1.9855 1.0297 9 6 6.9038 -2.3434 1.7584 10 6 7.8338 -2.6591 0.8268 11 7 7.2606 -2.4896 -0.3840 12 6 7.9291 -2.7200 -1.6671 13 6 7.1093 -3.7082 -2.4991 14 7 7.7792 -3.9388 -3.7859 15 6 7.1554 -5.0530 -4.5121 16 6 7.7868 -2.7172 -4.6018 17 7 6.0447 -2.0974 -0.2490 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8083 -1.2020 20 1 1.4468 -1.6636 -1.4204 21 7 2.2286 0.0488 -2.3815 22 6 2.1999 -0.5013 -3.6352 23 1 2.0726 -1.5672 -3.7544 24 6 2.3344 0.3108 -4.7529 25 7 2.4900 1.6097 -4.6076 26 14 2.2959 -0.4398 -6.4630 27 1 0.8967 -0.4685 -6.9595 28 1 3.1302 0.3767 -7.3808 29 1 2.8301 -1.8242 -6.4080 30 1 -0.3633 0.4756 0.9110 31 1 -0.3633 -1.0268 -0.0436 32 1 -0.3634 0.5511 -0.8674 33 1 2.1560 -0.1713 2.0837 34 1 1.4509 -1.6689 1.4042 35 1 7.0211 -2.3627 2.8318 36 1 8.8466 -2.9828 1.0165 37 1 8.0164 -1.7765 -2.2059 38 1 8.9231 -3.1308 -1.4904 39 1 7.0219 -4.6518 -1.9603 40 1 6.1153 -3.2974 -2.6758 41 1 6.1068 -4.8222 -4.7004 42 1 7.6709 -5.2024 -5.4608 43 1 7.2257 -5.9614 -3.9138 44 1 8.3162 -1.9275 -4.0687 45 1 8.2891 -2.9157 -5.5486 46 1 6.7612 -2.4019 -4.7933 47 1 4.2426 -0.6000 -1.0599 48 1 3.6678 -2.2892 -1.0393 49 1 2.3433 1.0061 -2.2746 50 1 2.5843 2.1772 -5.3886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054654041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:13 Heat of formation + Delta-G solvation = 74.185569 kcal Electronic energy + Delta-G solvation = -30081.426007 eV Core-core repulsion = 26146.315046 eV Total energy + Delta-G solvation = -3935.110961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.59730 -39.50877 -37.86665 -37.34913 -34.04486 -33.69475 -32.42743 -30.75704 -30.57032 -29.35034 -27.75201 -27.45648 -26.54955 -24.88475 -23.95195 -22.69247 -21.49267 -21.39405 -20.70078 -19.88533 -19.03938 -17.40539 -17.13482 -16.63523 -16.31524 -15.81923 -15.57456 -15.22049 -15.07395 -14.62171 -14.35280 -14.14041 -13.84295 -13.53018 -13.36475 -13.14667 -13.07266 -12.94848 -12.57865 -12.54687 -12.29387 -12.15783 -12.04745 -11.94937 -11.75423 -11.45835 -11.33234 -11.14265 -11.01407 -10.81913 -10.60031 -10.49915 -10.25817 -9.99411 -9.86666 -9.69933 -9.20006 -9.01795 -8.98828 -8.64877 -8.19978 -7.07233 -5.85191 -3.14832 1.75833 2.19066 2.37049 3.32161 3.35234 3.40788 3.42302 3.67193 3.78231 4.32469 4.50075 4.53958 4.71416 4.78075 4.95165 4.98310 5.04008 5.22024 5.26182 5.28071 5.29693 5.34021 5.49022 5.54050 5.59102 5.67608 5.68959 5.71232 5.72782 5.79002 5.83838 5.87036 5.92248 5.99547 6.05552 6.26588 6.32260 6.40211 6.52125 6.62621 6.64537 6.66481 6.68728 6.71895 6.83970 6.98474 7.61947 7.85073 7.99343 8.32349 8.48276 9.44120 9.99531 10.34910 11.36985 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006604 B = 0.005555 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4239.155938 B = 5039.606887 C = 8677.301609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.115 3.885 5 N -0.601 5.601 6 C 0.613 3.387 7 O -0.551 6.551 8 C -0.014 4.014 9 C -0.182 4.182 10 C -0.022 4.022 11 N -0.283 5.283 12 C 0.125 3.875 13 C 0.040 3.960 14 N -0.545 5.545 15 C 0.024 3.976 16 C 0.013 3.987 17 N -0.241 5.241 18 C 0.087 3.913 19 C 0.175 3.825 20 H 0.066 0.934 21 N -0.710 5.710 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.904 3.096 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.387 0.613 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 -10.276 6.470 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.400 3.600 7 O -0.428 6.428 8 C -0.174 4.174 9 C -0.210 4.210 10 C -0.164 4.164 11 N -0.072 5.072 12 C 0.004 3.996 13 C -0.089 4.089 14 N -0.269 5.269 15 C -0.124 4.124 16 C -0.135 4.135 17 N -0.077 5.077 18 C -0.039 4.039 19 C 0.063 3.937 20 H 0.084 0.916 21 N -0.349 5.349 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.735 3.265 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.177 0.823 36 H 0.197 0.803 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.221 0.779 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.448 -10.370 5.855 15.842 hybrid contribution -0.199 0.040 -0.500 0.540 sum 10.249 -10.330 5.355 15.506 Atomic orbital electron populations 1.21593 0.93882 1.01767 1.01701 1.22667 0.96292 0.99827 0.94763 0.89871 1.22278 0.82502 0.98169 0.97866 1.48346 1.11597 1.64738 1.08589 1.16558 0.81205 0.77201 0.85002 1.90745 1.82636 1.55590 1.13827 1.21886 0.96514 1.09343 0.89642 1.21716 0.91779 1.06931 1.00587 1.22836 1.01046 1.08142 0.84380 1.45591 1.08148 1.46355 1.07079 1.21962 0.95793 1.01520 0.80277 1.22340 0.96866 0.99152 0.90561 1.61983 1.54075 1.06894 1.03965 1.22385 0.97706 0.93573 0.98752 1.22548 1.01489 0.91682 0.97826 1.73824 0.98088 1.15452 1.20292 1.23288 1.02200 1.01633 0.76757 1.21306 0.91929 0.93658 0.86854 0.91555 1.42331 1.86306 1.06207 1.00094 1.19222 1.42317 0.92447 0.83268 0.91188 1.24721 1.02634 0.95420 0.97731 1.69660 1.56303 1.02799 1.28961 0.86245 0.77570 0.77911 0.84757 1.21607 1.21764 1.20896 0.93215 0.92844 0.91454 0.90831 0.91537 0.82264 0.80327 0.88662 0.87245 0.90221 0.92012 0.94849 0.91021 0.91365 0.91141 0.91067 0.94156 0.90497 0.92226 0.77908 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.29 37.16 0.35 -1.57 16 2 C -0.12 -1.90 3.27 -88.47 -0.29 -2.19 16 3 H 0.08 1.45 8.01 -51.93 -0.42 1.04 16 4 C 0.11 1.82 6.38 -2.53 -0.02 1.81 16 5 N -0.60 -10.75 3.33 -171.68 -0.57 -11.32 16 6 C 0.61 11.43 7.86 -12.39 -0.10 11.34 16 7 O -0.55 -11.20 17.18 5.30 0.09 -11.11 16 8 C -0.01 -0.23 6.98 -82.77 -0.58 -0.81 16 9 C -0.18 -2.48 10.81 -39.36 -0.43 -2.91 16 10 C -0.02 -0.24 11.40 -17.17 -0.20 -0.44 16 11 N -0.28 -3.58 3.41 -61.33 -0.21 -3.79 16 12 C 0.13 1.25 6.32 -4.04 -0.03 1.22 16 13 C 0.04 0.44 5.06 -3.82 -0.02 0.42 16 14 N -0.54 -5.66 5.02 -251.25 -1.26 -6.92 16 15 C 0.02 0.23 9.57 60.06 0.57 0.80 16 16 C 0.01 0.13 9.32 60.07 0.56 0.69 16 17 N -0.24 -3.89 9.19 33.42 0.31 -3.58 16 18 C 0.09 1.64 5.30 -3.07 -0.02 1.62 16 19 C 0.17 3.38 3.08 -66.10 -0.20 3.18 16 20 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 21 N -0.71 -16.89 5.15 -51.65 -0.27 -17.16 16 22 C -0.24 -6.35 9.96 -15.06 -0.15 -6.50 16 23 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 26 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.73 8.11 -51.93 -0.42 0.30 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 34 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 35 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.18 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.10 0.98 6.55 -51.93 -0.34 0.64 16 38 H 0.11 0.77 8.04 -51.93 -0.42 0.36 16 39 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 40 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 43 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 44 H 0.07 0.68 6.47 -51.93 -0.34 0.34 16 45 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 46 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.08 1.63 7.55 -51.93 -0.39 1.24 16 48 H 0.06 1.14 7.76 -51.93 -0.40 0.74 16 49 H 0.39 9.91 7.76 -40.82 -0.32 9.59 16 50 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 406.90 15.07 6.13 6.13 Total: -1.00 -31.95 406.90 -9.18 -41.14 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.48 Total: 10.10 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.63 Total: 6.34 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.28 Total: -69.09 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.95 -9.18 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054654041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.323 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds