Wall clock time and date at job start Wed Apr 1 2020 01:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88880 * 2 1 4 4 C 1.54912 * 111.00796 * 123.88215 * 2 1 3 5 5 N 1.47424 * 104.83319 * 155.08170 * 4 2 1 6 6 C 1.34776 * 125.64837 * 155.90740 * 5 4 2 7 7 O 1.21572 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.47706 * 120.00012 * 179.97438 * 6 5 4 9 9 C 1.41501 * 126.51436 * 179.71144 * 8 6 5 10 10 C 1.35366 * 105.50099 * 179.90476 * 9 8 6 11 11 N 1.35036 * 107.22795 * 0.35985 * 10 9 8 12 12 C 1.46499 * 124.88167 * 179.76238 * 11 10 9 13 13 C 1.53004 * 109.47137 * 124.97671 * 12 11 10 14 14 N 1.46898 * 109.47591 * 179.97438 * 13 12 11 15 15 C 1.46899 * 111.00211 * 169.99940 * 14 13 12 16 16 C 1.46902 * 110.99996 * 293.95389 * 14 13 12 17 17 N 1.28466 * 110.23213 * 359.76017 * 11 10 9 18 18 C 1.47023 * 108.70235 * 335.87439 * 5 4 2 19 19 C 1.54320 * 107.27576 * 1.05739 * 18 5 4 20 20 H 1.08990 * 110.72081 * 263.83328 * 19 18 5 21 21 N 1.46496 * 110.72131 * 140.55218 * 19 18 5 22 22 C 1.36937 * 120.00105 * 91.48188 * 21 19 18 23 23 H 1.08011 * 119.99816 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00719 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99432 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00509 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46736 * 90.00033 * 26 24 22 28 28 H 1.48500 * 109.47463 * 209.99985 * 26 24 22 29 29 H 1.48496 * 109.47299 * 330.00637 * 26 24 22 30 30 H 1.09002 * 109.47153 * 297.56874 * 1 2 3 31 31 H 1.09001 * 109.46832 * 177.57065 * 1 2 3 32 32 H 1.09004 * 109.47261 * 57.57047 * 1 2 3 33 33 H 1.08992 * 110.36777 * 273.92592 * 4 2 1 34 34 H 1.09005 * 110.36251 * 36.13876 * 4 2 1 35 35 H 1.07996 * 127.25355 * 0.02562 * 9 8 6 36 36 H 1.08008 * 126.39019 * 180.15480 * 10 9 8 37 37 H 1.09000 * 109.47346 * 244.96908 * 12 11 10 38 38 H 1.09000 * 109.47659 * 4.97494 * 12 11 10 39 39 H 1.09004 * 109.46936 * 300.00283 * 13 12 11 40 40 H 1.09000 * 109.46991 * 59.99413 * 13 12 11 41 41 H 1.09002 * 109.46961 * 60.00183 * 15 14 13 42 42 H 1.09004 * 109.46969 * 180.02562 * 15 14 13 43 43 H 1.09000 * 109.47126 * 299.99916 * 15 14 13 44 44 H 1.09004 * 109.47212 * 59.99590 * 16 14 13 45 45 H 1.08994 * 109.47440 * 179.97438 * 16 14 13 46 46 H 1.08999 * 109.46785 * 300.00009 * 16 14 13 47 47 H 1.09006 * 109.88301 * 120.47721 * 18 5 4 48 48 H 1.09003 * 109.88253 * 241.48112 * 18 5 4 49 49 H 0.97005 * 120.00849 * 271.48063 * 21 19 18 50 50 H 0.97002 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 3.4272 -1.2428 0.7737 6 6 4.4477 -1.5610 1.5944 7 8 4.3004 -1.4996 2.7996 8 6 5.7449 -1.9855 1.0297 9 6 6.9038 -2.3434 1.7584 10 6 7.8338 -2.6591 0.8268 11 7 7.2606 -2.4896 -0.3840 12 6 7.9291 -2.7200 -1.6671 13 6 7.1093 -3.7082 -2.4991 14 7 7.7792 -3.9388 -3.7859 15 6 7.1554 -5.0530 -4.5121 16 6 7.7868 -2.7172 -4.6018 17 7 6.0447 -2.0974 -0.2490 18 6 3.4674 -1.2743 -0.6957 19 6 2.0861 -0.8083 -1.2020 20 1 1.4468 -1.6636 -1.4204 21 7 2.2286 0.0488 -2.3815 22 6 2.1999 -0.5013 -3.6352 23 1 2.0726 -1.5672 -3.7544 24 6 2.3344 0.3108 -4.7529 25 7 2.4900 1.6097 -4.6076 26 14 2.2959 -0.4398 -6.4630 27 1 0.8967 -0.4685 -6.9595 28 1 3.1302 0.3767 -7.3808 29 1 2.8301 -1.8242 -6.4080 30 1 -0.3633 0.4756 0.9110 31 1 -0.3633 -1.0268 -0.0436 32 1 -0.3634 0.5511 -0.8674 33 1 2.1560 -0.1713 2.0837 34 1 1.4509 -1.6689 1.4042 35 1 7.0211 -2.3627 2.8318 36 1 8.8466 -2.9828 1.0165 37 1 8.0164 -1.7765 -2.2059 38 1 8.9231 -3.1308 -1.4904 39 1 7.0219 -4.6518 -1.9603 40 1 6.1153 -3.2974 -2.6758 41 1 6.1068 -4.8222 -4.7004 42 1 7.6709 -5.2024 -5.4608 43 1 7.2257 -5.9614 -3.9138 44 1 8.3162 -1.9275 -4.0687 45 1 8.2891 -2.9157 -5.5486 46 1 6.7612 -2.4019 -4.7933 47 1 4.2426 -0.6000 -1.0599 48 1 3.6678 -2.2892 -1.0393 49 1 2.3433 1.0061 -2.2746 50 1 2.5843 2.1772 -5.3886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054654041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:12 Heat of formation + Delta-G solvation = 52.182034 kcal Electronic energy + Delta-G solvation = -30082.380152 eV Core-core repulsion = 26146.315046 eV Total energy + Delta-G solvation = -3936.065106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.64711 -40.96126 -38.94769 -38.64594 -35.88708 -34.72204 -33.89338 -32.53630 -31.66291 -30.34517 -29.16721 -28.58860 -27.78372 -26.06088 -25.68280 -23.91522 -22.77201 -22.39357 -21.80209 -21.39979 -20.29477 -19.12727 -18.48871 -17.87496 -17.44618 -17.20249 -16.72160 -16.48367 -16.25440 -15.98790 -15.53882 -15.39633 -15.32535 -14.87376 -14.67155 -14.50862 -14.29075 -14.13184 -14.01114 -13.71335 -13.46370 -13.43363 -13.04792 -12.99332 -12.87353 -12.85694 -12.71875 -12.59306 -12.29924 -12.20697 -12.16454 -12.06202 -11.73271 -11.69625 -11.49721 -11.26888 -10.93477 -10.27478 -10.07406 -9.66274 -9.55377 -9.07155 -7.95852 -5.25330 0.52755 1.21087 1.42732 1.44443 1.46187 1.53535 1.98371 2.33641 2.53659 2.89729 3.28616 3.35590 3.52906 3.69816 3.79789 3.80619 3.90646 3.98578 4.12488 4.18282 4.21305 4.26356 4.35251 4.42742 4.44794 4.51783 4.62174 4.63362 4.65119 4.68324 4.75054 4.78935 4.81305 4.88670 4.94266 4.94521 4.98065 5.11175 5.14120 5.20106 5.31730 5.39797 5.48722 5.52455 5.76233 5.84490 5.94765 6.24160 6.40242 6.82636 7.11917 7.31816 8.02828 8.28459 9.27217 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.006604 B = 0.005555 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4239.155938 B = 5039.606887 C = 8677.301609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 H 0.070 0.930 4 C 0.116 3.884 5 N -0.604 5.604 6 C 0.608 3.392 7 O -0.573 6.573 8 C -0.047 4.047 9 C -0.199 4.199 10 C 0.007 3.993 11 N -0.280 5.280 12 C 0.124 3.876 13 C 0.046 3.954 14 N -0.536 5.536 15 C 0.021 3.979 16 C 0.013 3.987 17 N -0.274 5.274 18 C 0.112 3.888 19 C 0.170 3.830 20 H 0.070 0.930 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.074 0.926 24 C -0.066 4.066 25 N -0.966 5.966 26 Si 0.965 3.035 27 H -0.287 1.287 28 H -0.296 1.296 29 H -0.272 1.272 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.170 0.830 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.086 0.914 40 H 0.022 0.978 41 H 0.013 0.987 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.375 0.625 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.994 -12.134 6.943 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.089 0.911 4 C -0.006 4.006 5 N -0.336 5.336 6 C 0.396 3.604 7 O -0.453 6.453 8 C -0.206 4.206 9 C -0.227 4.227 10 C -0.135 4.135 11 N -0.069 5.069 12 C 0.005 3.995 13 C -0.083 4.083 14 N -0.260 5.260 15 C -0.127 4.127 16 C -0.135 4.135 17 N -0.111 5.111 18 C -0.015 4.015 19 C 0.059 3.941 20 H 0.088 0.912 21 N -0.357 5.357 22 C -0.369 4.369 23 H 0.092 0.908 24 C -0.259 4.259 25 N -0.616 5.616 26 Si 0.795 3.205 27 H -0.214 1.214 28 H -0.223 1.223 29 H -0.197 1.197 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.187 0.813 36 H 0.249 0.751 37 H 0.108 0.892 38 H 0.170 0.830 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.027 0.973 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.207 0.793 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.046 -12.268 6.350 18.328 hybrid contribution -0.630 0.560 -0.606 1.039 sum 11.416 -11.708 5.743 17.331 Atomic orbital electron populations 1.21548 0.91927 1.02609 1.02179 1.22565 0.97797 0.98671 0.93385 0.91148 1.22386 0.81840 0.98853 0.97520 1.48394 1.12436 1.64799 1.07934 1.16920 0.81920 0.76693 0.84818 1.90710 1.83227 1.56760 1.14565 1.21884 0.96745 1.11328 0.90650 1.21989 0.91330 1.07715 1.01643 1.23558 1.02290 1.05061 0.82618 1.45890 1.07318 1.45110 1.08613 1.22204 0.96970 1.01184 0.79171 1.22238 0.95239 0.99479 0.91310 1.62071 1.53440 1.06830 1.03683 1.22478 0.96672 0.93764 0.99761 1.22582 0.99838 0.92204 0.98925 1.73765 1.00207 1.16823 1.20275 1.22796 1.00728 1.00379 0.77551 1.21471 0.92321 0.93687 0.86573 0.91212 1.42419 1.86452 1.06034 1.00770 1.19546 1.40415 0.92622 0.84340 0.90776 1.25445 1.03453 0.95821 1.01189 1.69812 1.58331 1.04042 1.29445 0.85268 0.77324 0.77495 0.80449 1.21371 1.22267 1.19706 0.90573 0.91590 0.93336 0.90202 0.89645 0.81255 0.75120 0.89185 0.83009 0.89552 0.95999 0.96807 0.89524 0.89967 0.90164 0.89453 0.97305 0.93205 0.92839 0.79270 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.29 71.98 0.67 -2.81 16 2 C -0.10 -3.42 3.27 -9.40 -0.03 -3.46 16 3 H 0.07 2.51 8.01 -2.39 -0.02 2.49 16 4 C 0.12 3.62 6.38 86.86 0.55 4.17 16 5 N -0.60 -21.92 3.33 -815.34 -2.71 -24.63 16 6 C 0.61 22.99 7.86 86.75 0.68 23.67 16 7 O -0.57 -23.46 17.18 -3.94 -0.07 -23.53 16 8 C -0.05 -1.60 6.98 42.46 0.30 -1.30 16 9 C -0.20 -5.12 10.81 22.41 0.24 -4.88 16 10 C 0.01 0.13 11.40 83.54 0.95 1.08 16 11 N -0.28 -6.63 3.41 -347.94 -1.19 -7.81 16 12 C 0.12 2.21 6.32 86.38 0.55 2.75 16 13 C 0.05 0.99 5.06 86.30 0.44 1.43 16 14 N -0.54 -10.41 5.02 -948.83 -4.76 -15.17 16 15 C 0.02 0.38 9.57 127.69 1.22 1.60 16 16 C 0.01 0.26 9.32 127.69 1.19 1.45 16 17 N -0.27 -8.90 9.19 -48.18 -0.44 -9.34 16 18 C 0.11 4.35 5.30 86.73 0.46 4.81 16 19 C 0.17 6.70 3.08 46.18 0.14 6.84 16 20 H 0.07 2.71 7.96 -2.39 -0.02 2.70 16 21 N -0.72 -35.21 5.15 -317.33 -1.63 -36.84 16 22 C -0.24 -12.73 9.96 84.03 0.84 -11.90 16 23 H 0.07 3.84 7.83 -2.90 -0.02 3.82 16 24 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 25 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 26 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 27 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.67 8.11 -2.39 -0.02 1.65 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.08 2.42 8.04 -2.39 -0.02 2.41 16 34 H 0.09 2.37 8.03 -2.38 -0.02 2.35 16 35 H 0.17 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.23 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.09 1.74 6.55 -2.39 -0.02 1.72 16 38 H 0.15 1.45 8.04 -2.39 -0.02 1.43 16 39 H 0.09 1.71 8.06 -2.38 -0.02 1.69 16 40 H 0.02 0.64 8.06 -2.39 -0.02 0.62 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.09 1.29 8.12 -2.38 -0.02 1.27 16 43 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 44 H 0.08 1.47 6.47 -2.38 -0.02 1.45 16 45 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 46 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.05 2.22 7.55 -2.38 -0.02 2.20 16 48 H 0.05 2.13 7.76 -2.39 -0.02 2.11 16 49 H 0.37 19.99 7.76 -92.70 -0.72 19.27 16 50 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -71.96 406.90 0.38 -71.58 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.20 Total: 36.04 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 8.67 Total: 20.23 kcal Atomic # 7 Polarization: -140.80 SS G_CDS: -10.45 Total: -151.25 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.07 Total: -23.53 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.96 0.38 -71.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054654041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.766 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds