Wall clock time and date at job start Tue Mar 31 2020 23:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.58014 * 2 1 4 4 C 1.53189 * 109.58806 * 239.71931 * 2 1 3 5 5 C 1.53030 * 109.31281 * 185.57712 * 4 2 1 6 6 C 1.53042 * 109.54109 * 61.36368 * 5 4 2 7 7 H 1.09001 * 109.49537 * 178.65223 * 6 5 4 8 8 N 1.46496 * 109.49604 * 58.58624 * 6 5 4 9 9 C 1.34777 * 119.99832 * 154.72637 * 8 6 5 10 10 O 1.21604 * 120.00148 * 0.27393 * 9 8 6 11 11 C 1.47526 * 120.00304 * 180.26985 * 9 8 6 12 12 C 1.36593 * 125.77518 * 179.97438 * 11 9 8 13 13 N 1.34813 * 106.84132 * 179.97438 * 12 11 9 14 14 C 1.46499 * 126.59325 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47152 * 75.00039 * 14 13 12 16 16 C 1.52999 * 109.47154 * 195.00143 * 14 13 12 17 17 C 1.52997 * 109.47158 * 315.00249 * 14 13 12 18 18 N 1.40213 * 106.80858 * 0.02562 * 13 12 11 19 19 N 1.28755 * 108.36952 * 359.74622 * 18 13 12 20 20 C 1.53192 * 109.31164 * 298.63285 * 6 5 4 21 21 N 1.46921 * 109.58744 * 120.42573 * 2 1 3 22 22 C 1.36942 * 120.63117 * 353.37439 * 21 2 1 23 23 H 1.07997 * 119.99824 * 29.02646 * 22 21 2 24 24 C 1.38808 * 119.99874 * 209.01912 * 22 21 2 25 25 N 1.31622 * 120.00659 * 15.03041 * 24 22 21 26 26 Si 1.86804 * 120.00007 * 195.03155 * 24 22 21 27 27 H 1.48503 * 109.47101 * 60.00021 * 26 24 22 28 28 H 1.48501 * 109.47422 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46976 * 300.00278 * 26 24 22 30 30 H 1.08999 * 109.46901 * 180.28817 * 1 2 3 31 31 H 1.09003 * 109.47378 * 300.27813 * 1 2 3 32 32 H 1.08991 * 109.47329 * 60.28230 * 1 2 3 33 33 H 1.08994 * 109.49947 * 65.62125 * 4 2 1 34 34 H 1.09002 * 109.49401 * 305.52794 * 4 2 1 35 35 H 1.09005 * 109.46163 * 301.34244 * 5 4 2 36 36 H 1.09007 * 109.45253 * 181.37610 * 5 4 2 37 37 H 0.96994 * 120.00396 * 334.99700 * 8 6 5 38 38 H 1.08004 * 126.57690 * 359.96532 * 12 11 9 39 39 H 1.09006 * 109.46811 * 60.00035 * 15 14 13 40 40 H 1.09000 * 109.47230 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47202 * 300.00228 * 15 14 13 42 42 H 1.09004 * 109.46850 * 59.99974 * 16 14 13 43 43 H 1.09000 * 109.47288 * 180.02562 * 16 14 13 44 44 H 1.09006 * 109.47205 * 300.00207 * 16 14 13 45 45 H 1.08997 * 109.47049 * 59.99861 * 17 14 13 46 46 H 1.09000 * 109.46947 * 180.02562 * 17 14 13 47 47 H 1.09002 * 109.47430 * 299.99764 * 17 14 13 48 48 H 1.08997 * 109.58952 * 174.42221 * 20 6 5 49 49 H 1.09007 * 109.58631 * 294.85048 * 20 6 5 50 50 H 0.96994 * 120.00799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2463 5 6 3.5674 -0.8464 -1.1712 6 6 3.9569 -1.6657 0.0614 7 1 5.0412 -1.7700 0.1011 8 7 3.3406 -2.9923 -0.0186 9 6 3.9003 -4.0353 0.6259 10 8 4.9141 -3.8742 1.2779 11 6 3.2830 -5.3725 0.5406 12 6 3.7484 -6.5067 1.1429 13 7 2.8989 -7.5004 0.8136 14 6 2.9920 -8.9023 1.2288 15 6 2.5668 -9.0298 2.6930 16 6 2.0711 -9.7554 0.3541 17 6 4.4352 -9.3857 1.0729 18 7 1.9101 -6.9345 -0.0036 19 7 2.1649 -5.6797 -0.1390 20 6 3.4651 -0.9485 1.3226 21 7 2.0226 -0.7010 1.1936 22 6 1.1537 -1.1154 2.1676 23 1 0.1360 -1.3694 1.9108 24 6 1.5813 -1.2090 3.4849 25 7 2.7046 -0.6313 3.8550 26 14 0.5624 -2.1549 4.7326 27 1 0.4327 -3.5684 4.2962 28 1 1.2315 -2.1058 6.0574 29 1 -0.7867 -1.5430 4.8358 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3634 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8924 33 1 1.7660 -0.1641 -2.1370 34 1 1.6030 -1.7236 -1.2935 35 1 4.0061 0.1489 -1.0991 36 1 3.9376 -1.3422 -2.0686 37 1 2.5320 -3.1209 -0.5385 38 1 4.6281 -6.5912 1.7638 39 1 1.5385 -8.6854 2.8040 40 1 2.6355 -10.0729 3.0017 41 1 3.2228 -8.4221 3.3161 42 1 2.3741 -9.6645 -0.6890 43 1 2.1399 -10.7984 0.6633 44 1 1.0428 -9.4110 0.4652 45 1 5.0912 -8.7779 1.6960 46 1 4.5042 -10.4288 1.3814 47 1 4.7382 -9.2948 0.0298 48 1 3.6519 -1.5743 2.1952 49 1 3.9904 0.0004 1.4316 50 1 3.0036 -0.6971 4.7753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071556907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:26 Heat of formation + Delta-G solvation = 75.096107 kcal Electronic energy + Delta-G solvation = -30741.892602 eV Core-core repulsion = 26806.821125 eV Total energy + Delta-G solvation = -3935.071477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.10803 -39.22162 -37.65826 -37.22924 -34.02723 -32.65911 -31.98343 -31.11790 -30.04829 -29.70411 -27.91793 -27.83192 -26.15410 -24.93276 -23.75004 -23.15965 -22.06997 -20.72193 -20.41213 -19.78415 -18.58798 -17.59229 -16.36702 -16.17604 -15.99180 -15.32108 -15.00268 -14.56490 -14.54235 -14.45140 -13.99861 -13.91920 -13.65705 -13.42199 -13.08337 -12.99587 -12.82968 -12.71696 -12.62686 -12.38948 -12.25589 -12.11703 -11.83667 -11.74277 -11.43314 -11.14262 -11.08080 -11.01931 -10.88418 -10.77797 -10.63605 -10.30254 -10.25075 -10.23966 -9.87508 -9.57615 -9.38963 -9.33895 -9.07284 -8.36318 -8.24072 -6.50751 -5.66162 -3.09261 1.30621 2.01506 2.06173 3.43284 3.48830 3.50579 3.69188 3.89366 4.04809 4.24907 4.35735 4.41905 4.57774 4.92395 4.97687 5.01644 5.15427 5.21382 5.24628 5.27899 5.34068 5.40839 5.43138 5.45476 5.53636 5.56787 5.61490 5.70150 5.73349 5.82505 6.06219 6.11626 6.21997 6.25279 6.43055 6.44895 6.49978 6.54295 6.62130 6.72117 6.78998 6.99980 7.14153 7.23227 7.47764 7.78629 7.92604 8.04943 8.31081 8.58343 8.84986 9.32884 9.97402 10.53211 11.41808 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.004069 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.051902 B = 6879.884219 C = 7895.173594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.077 0.923 8 N -0.682 5.682 9 C 0.601 3.399 10 O -0.548 6.548 11 C -0.087 4.087 12 C 0.086 3.914 13 N -0.355 5.355 14 C 0.171 3.829 15 C -0.163 4.163 16 C -0.147 4.147 17 C -0.162 4.162 18 N -0.070 5.070 19 N -0.204 5.204 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.244 4.244 23 H 0.067 0.933 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.895 3.105 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.403 0.597 38 H 0.198 0.802 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.026 0.974 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 -16.198 -8.207 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.095 0.905 8 N -0.331 5.331 9 C 0.384 3.616 10 O -0.426 6.426 11 C -0.226 4.226 12 C -0.070 4.070 13 N -0.142 5.142 14 C 0.088 3.912 15 C -0.221 4.221 16 C -0.205 4.205 17 C -0.220 4.220 18 N -0.050 5.050 19 N -0.077 5.077 20 C 0.035 3.965 21 N -0.305 5.305 22 C -0.374 4.374 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.546 5.546 26 Si 0.725 3.275 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.239 0.761 38 H 0.215 0.785 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.116 0.884 49 H 0.044 0.956 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.345 -16.330 -8.362 18.495 hybrid contribution -0.003 -0.479 1.236 1.326 sum 2.343 -16.809 -7.126 18.407 Atomic orbital electron populations 1.21800 0.96175 1.01345 1.00042 1.20449 0.92878 0.93541 0.87159 0.95806 1.22078 0.95155 1.00917 0.99008 1.21687 0.97092 1.00048 0.96789 1.21841 0.96946 0.81611 0.98419 0.90517 1.45638 1.29145 1.07936 1.50403 1.16667 0.83415 0.81949 0.79567 1.90772 1.25256 1.84536 1.42034 1.21652 0.97552 0.96638 1.06793 1.23188 0.97145 0.87338 0.99326 1.50739 1.19199 1.09154 1.35132 1.21020 0.98200 0.75781 0.96203 1.22300 1.03237 1.03654 0.92903 1.21978 1.00030 0.98856 0.99635 1.22288 0.93220 1.02840 1.03669 1.81891 1.09902 1.01582 1.11618 1.74633 1.11565 1.06155 1.15356 1.21199 0.83738 0.97067 0.94459 1.44029 1.02721 1.64678 1.19118 1.19049 0.94596 1.37581 0.86169 0.91550 1.25000 0.97679 0.99754 0.96858 1.69969 1.23176 1.44599 1.16807 0.86489 0.79707 0.80303 0.80992 1.21422 1.21736 1.20989 0.92846 0.92150 0.94450 0.92874 0.92416 0.91083 0.93003 0.76100 0.78490 0.91146 0.89814 0.91259 0.91297 0.90338 0.90617 0.91083 0.89584 0.91212 0.88424 0.95640 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.94 37.16 0.30 -2.30 16 2 C 0.17 3.41 3.50 -67.60 -0.24 3.17 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.25 5.21 -26.62 -0.14 -2.39 16 5 C -0.12 -1.96 5.58 -26.69 -0.15 -2.11 16 6 C 0.12 2.33 2.81 -67.81 -0.19 2.14 16 7 H 0.08 1.53 7.57 -51.93 -0.39 1.13 16 8 N -0.68 -13.43 4.91 -54.73 -0.27 -13.70 16 9 C 0.60 12.24 7.79 -12.47 -0.10 12.15 16 10 O -0.55 -12.38 16.52 5.27 0.09 -12.29 16 11 C -0.09 -1.56 6.99 -83.55 -0.58 -2.14 16 12 C 0.09 1.25 10.43 -16.84 -0.18 1.07 16 13 N -0.36 -4.58 3.44 -48.36 -0.17 -4.75 16 14 C 0.17 1.46 1.25 -131.82 -0.16 1.30 16 15 C -0.16 -1.27 8.74 37.16 0.32 -0.95 16 16 C -0.15 -1.10 8.11 37.16 0.30 -0.80 16 17 C -0.16 -1.01 8.30 37.16 0.31 -0.70 16 18 N -0.07 -1.12 12.91 60.35 0.78 -0.35 16 19 N -0.20 -3.67 12.04 32.85 0.40 -3.27 16 20 C 0.16 3.95 4.89 -3.71 -0.02 3.93 16 21 N -0.58 -14.30 2.91 -164.77 -0.48 -14.78 16 22 C -0.24 -6.66 8.61 -15.06 -0.13 -6.79 16 23 H 0.07 1.79 6.20 -52.49 -0.33 1.47 16 24 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -26.82 11.14 55.49 0.62 -26.21 16 26 Si 0.89 22.71 29.58 -169.99 -5.03 17.68 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 30 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 31 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.40 7.67 6.46 -40.82 -0.26 7.40 16 38 H 0.20 2.31 7.63 -52.48 -0.40 1.91 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 45 H 0.07 0.44 7.44 -51.93 -0.39 0.05 16 46 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.10 2.79 6.06 -51.93 -0.31 2.48 16 49 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 50 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -33.37 394.92 -7.10 -40.47 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.25 Total: 5.59 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.74 Total: 5.66 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.88 Total: -63.05 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.37 -7.10 -40.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071556907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.562 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds