Wall clock time and date at job start Tue Mar 31 2020 23:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.58014 * 2 1 4 4 C 1.53189 * 109.58806 * 239.71931 * 2 1 3 5 5 C 1.53030 * 109.31281 * 185.57712 * 4 2 1 6 6 C 1.53042 * 109.54109 * 61.36368 * 5 4 2 7 7 H 1.09001 * 109.49537 * 178.65223 * 6 5 4 8 8 N 1.46496 * 109.49604 * 58.58624 * 6 5 4 9 9 C 1.34777 * 119.99832 * 154.72637 * 8 6 5 10 10 O 1.21604 * 120.00148 * 0.27393 * 9 8 6 11 11 C 1.47526 * 120.00304 * 180.26985 * 9 8 6 12 12 C 1.36593 * 125.77518 * 179.97438 * 11 9 8 13 13 N 1.34813 * 106.84132 * 179.97438 * 12 11 9 14 14 C 1.46499 * 126.59325 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47152 * 75.00039 * 14 13 12 16 16 C 1.52999 * 109.47154 * 195.00143 * 14 13 12 17 17 C 1.52997 * 109.47158 * 315.00249 * 14 13 12 18 18 N 1.40213 * 106.80858 * 0.02562 * 13 12 11 19 19 N 1.28755 * 108.36952 * 359.74622 * 18 13 12 20 20 C 1.53192 * 109.31164 * 298.63285 * 6 5 4 21 21 N 1.46921 * 109.58744 * 120.42573 * 2 1 3 22 22 C 1.36942 * 120.63117 * 353.37439 * 21 2 1 23 23 H 1.07997 * 119.99824 * 29.02646 * 22 21 2 24 24 C 1.38808 * 119.99874 * 209.01912 * 22 21 2 25 25 N 1.31622 * 120.00659 * 15.03041 * 24 22 21 26 26 Si 1.86804 * 120.00007 * 195.03155 * 24 22 21 27 27 H 1.48503 * 109.47101 * 60.00021 * 26 24 22 28 28 H 1.48501 * 109.47422 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46976 * 300.00278 * 26 24 22 30 30 H 1.08999 * 109.46901 * 180.28817 * 1 2 3 31 31 H 1.09003 * 109.47378 * 300.27813 * 1 2 3 32 32 H 1.08991 * 109.47329 * 60.28230 * 1 2 3 33 33 H 1.08994 * 109.49947 * 65.62125 * 4 2 1 34 34 H 1.09002 * 109.49401 * 305.52794 * 4 2 1 35 35 H 1.09005 * 109.46163 * 301.34244 * 5 4 2 36 36 H 1.09007 * 109.45253 * 181.37610 * 5 4 2 37 37 H 0.96994 * 120.00396 * 334.99700 * 8 6 5 38 38 H 1.08004 * 126.57690 * 359.96532 * 12 11 9 39 39 H 1.09006 * 109.46811 * 60.00035 * 15 14 13 40 40 H 1.09000 * 109.47230 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47202 * 300.00228 * 15 14 13 42 42 H 1.09004 * 109.46850 * 59.99974 * 16 14 13 43 43 H 1.09000 * 109.47288 * 180.02562 * 16 14 13 44 44 H 1.09006 * 109.47205 * 300.00207 * 16 14 13 45 45 H 1.08997 * 109.47049 * 59.99861 * 17 14 13 46 46 H 1.09000 * 109.46947 * 180.02562 * 17 14 13 47 47 H 1.09002 * 109.47430 * 299.99764 * 17 14 13 48 48 H 1.08997 * 109.58952 * 174.42221 * 20 6 5 49 49 H 1.09007 * 109.58631 * 294.85048 * 20 6 5 50 50 H 0.96994 * 120.00799 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2463 5 6 3.5674 -0.8464 -1.1712 6 6 3.9569 -1.6657 0.0614 7 1 5.0412 -1.7700 0.1011 8 7 3.3406 -2.9923 -0.0186 9 6 3.9003 -4.0353 0.6259 10 8 4.9141 -3.8742 1.2779 11 6 3.2830 -5.3725 0.5406 12 6 3.7484 -6.5067 1.1429 13 7 2.8989 -7.5004 0.8136 14 6 2.9920 -8.9023 1.2288 15 6 2.5668 -9.0298 2.6930 16 6 2.0711 -9.7554 0.3541 17 6 4.4352 -9.3857 1.0729 18 7 1.9101 -6.9345 -0.0036 19 7 2.1649 -5.6797 -0.1390 20 6 3.4651 -0.9485 1.3226 21 7 2.0226 -0.7010 1.1936 22 6 1.1537 -1.1154 2.1676 23 1 0.1360 -1.3694 1.9108 24 6 1.5813 -1.2090 3.4849 25 7 2.7046 -0.6313 3.8550 26 14 0.5624 -2.1549 4.7326 27 1 0.4327 -3.5684 4.2962 28 1 1.2315 -2.1058 6.0574 29 1 -0.7867 -1.5430 4.8358 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3634 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8924 33 1 1.7660 -0.1641 -2.1370 34 1 1.6030 -1.7236 -1.2935 35 1 4.0061 0.1489 -1.0991 36 1 3.9376 -1.3422 -2.0686 37 1 2.5320 -3.1209 -0.5385 38 1 4.6281 -6.5912 1.7638 39 1 1.5385 -8.6854 2.8040 40 1 2.6355 -10.0729 3.0017 41 1 3.2228 -8.4221 3.3161 42 1 2.3741 -9.6645 -0.6890 43 1 2.1399 -10.7984 0.6633 44 1 1.0428 -9.4110 0.4652 45 1 5.0912 -8.7779 1.6960 46 1 4.5042 -10.4288 1.3814 47 1 4.7382 -9.2948 0.0298 48 1 3.6519 -1.5743 2.1952 49 1 3.9904 0.0004 1.4316 50 1 3.0036 -0.6971 4.7753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071556907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:25 Heat of formation + Delta-G solvation = 52.428661 kcal Electronic energy + Delta-G solvation = -30742.875536 eV Core-core repulsion = 26806.821125 eV Total energy + Delta-G solvation = -3936.054411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -43.29887 -40.81713 -39.08907 -38.28359 -35.77213 -34.50538 -33.08445 -32.56985 -31.75230 -31.27446 -28.48815 -28.45701 -27.85315 -26.79488 -24.87605 -24.52242 -23.83108 -22.13641 -21.85546 -21.01912 -20.30484 -18.69958 -18.19782 -17.46527 -17.12498 -17.05487 -16.61196 -15.91336 -15.73583 -15.72166 -15.49080 -15.19445 -15.00040 -14.95512 -14.63415 -14.37204 -14.03171 -13.69751 -13.59837 -13.40397 -13.32271 -13.19061 -12.98387 -12.86272 -12.80917 -12.60942 -12.57790 -12.47056 -12.41046 -12.34063 -12.12198 -12.08860 -11.98005 -11.56575 -11.27393 -11.23668 -11.09511 -11.02274 -10.50833 -10.37825 -9.88880 -8.54481 -7.80294 -5.24448 0.14711 0.67229 1.04113 1.37337 1.40193 1.45412 2.20761 2.42351 2.50037 3.20680 3.25614 3.34450 3.62446 3.66178 3.73986 3.75528 3.94235 4.05868 4.12626 4.17379 4.21091 4.51110 4.51875 4.54904 4.57189 4.65197 4.65848 4.73355 4.76896 4.77296 4.80818 4.83732 4.98232 5.03901 5.05860 5.10908 5.12867 5.15990 5.25757 5.27847 5.35171 5.54610 5.56326 5.63792 5.69741 5.75980 5.77699 6.46630 6.57719 6.94836 7.21147 7.28598 7.95498 8.45384 9.24545 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.004069 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.051902 B = 6879.884219 C = 7895.173594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.020 0.980 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.074 0.926 8 N -0.679 5.679 9 C 0.596 3.404 10 O -0.579 6.579 11 C -0.118 4.118 12 C 0.100 3.900 13 N -0.338 5.338 14 C 0.157 3.843 15 C -0.161 4.161 16 C -0.145 4.145 17 C -0.158 4.158 18 N -0.082 5.082 19 N -0.226 5.226 20 C 0.172 3.828 21 N -0.595 5.595 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.050 4.050 25 N -0.933 5.933 26 Si 0.947 3.053 27 H -0.293 1.293 28 H -0.296 1.296 29 H -0.272 1.272 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.407 0.593 38 H 0.223 0.777 39 H 0.049 0.951 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.003 0.997 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 -18.297 -9.884 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.037 0.963 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.020 3.980 7 H 0.092 0.908 8 N -0.328 5.328 9 C 0.381 3.619 10 O -0.459 6.459 11 C -0.258 4.258 12 C -0.058 4.058 13 N -0.125 5.125 14 C 0.076 3.924 15 C -0.219 4.219 16 C -0.202 4.202 17 C -0.216 4.216 18 N -0.061 5.061 19 N -0.099 5.099 20 C 0.045 3.955 21 N -0.319 5.319 22 C -0.366 4.366 23 H 0.086 0.914 24 C -0.245 4.245 25 N -0.580 5.580 26 Si 0.777 3.223 27 H -0.220 1.220 28 H -0.222 1.222 29 H -0.198 1.198 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.240 0.760 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.021 0.979 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.929 -18.450 -10.085 21.114 hybrid contribution 0.093 0.093 1.744 1.749 sum 2.022 -18.357 -8.340 20.264 Atomic orbital electron populations 1.21723 0.95006 1.01017 1.00834 1.20749 0.93980 0.93335 0.86928 0.96278 1.21966 0.95058 1.00743 0.98281 1.21669 0.97040 1.00104 0.95977 1.21626 0.96647 0.81869 0.97896 0.90801 1.45615 1.29220 1.07710 1.50256 1.17047 0.83093 0.82990 0.78796 1.90739 1.26650 1.85269 1.43283 1.21500 0.98689 0.96473 1.09156 1.23519 0.97455 0.86619 0.98225 1.51162 1.17532 1.10486 1.33309 1.21629 1.00398 0.73449 0.96879 1.22341 1.01728 1.05783 0.92076 1.22013 0.98579 1.00520 0.99135 1.22330 0.91032 1.04688 1.03586 1.81786 1.10880 1.01028 1.12432 1.74592 1.11921 1.07153 1.16226 1.20890 0.83975 0.95542 0.95122 1.44238 1.02403 1.65366 1.19896 1.19319 0.94878 1.35762 0.86681 0.91374 1.25626 0.98882 1.01378 0.98640 1.70130 1.24862 1.46631 1.16394 0.85641 0.78947 0.78810 0.78925 1.21986 1.22231 1.19762 0.93613 0.94522 0.90536 0.89096 0.92694 0.90198 0.89834 0.75629 0.76043 0.93175 0.86291 0.91738 0.91963 0.86865 0.92342 0.90875 0.86396 0.91688 0.93097 0.97898 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.94 71.98 0.57 -4.12 16 2 C 0.16 6.19 3.50 44.98 0.16 6.35 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -3.79 5.21 30.67 0.16 -3.63 16 5 C -0.11 -3.40 5.58 30.62 0.17 -3.23 16 6 C 0.13 5.01 2.81 45.07 0.13 5.13 16 7 H 0.07 2.99 7.57 -2.39 -0.02 2.97 16 8 N -0.68 -26.95 4.91 -445.33 -2.19 -29.14 16 9 C 0.60 24.85 7.79 86.69 0.68 25.52 16 10 O -0.58 -27.02 16.52 -4.04 -0.07 -27.08 16 11 C -0.12 -4.29 6.99 40.82 0.29 -4.00 16 12 C 0.10 2.82 10.43 83.85 0.87 3.69 16 13 N -0.34 -8.37 3.44 -306.91 -1.06 -9.43 16 14 C 0.16 2.34 1.25 3.60 0.00 2.34 16 15 C -0.16 -2.15 8.74 71.98 0.63 -1.52 16 16 C -0.15 -1.84 8.11 71.98 0.58 -1.26 16 17 C -0.16 -1.48 8.30 71.98 0.60 -0.88 16 18 N -0.08 -2.58 12.91 37.02 0.48 -2.10 16 19 N -0.23 -8.17 12.04 -49.99 -0.60 -8.77 16 20 C 0.17 8.68 4.89 86.36 0.42 9.10 16 21 N -0.60 -29.72 2.91 -675.22 -1.96 -31.69 16 22 C -0.24 -13.12 8.61 84.03 0.72 -12.40 16 23 H 0.07 3.72 6.20 -2.91 -0.02 3.70 16 24 C -0.05 -2.95 4.96 84.86 0.42 -2.53 16 25 N -0.93 -58.06 11.14 21.65 0.24 -57.82 16 26 Si 0.95 47.98 29.58 68.60 2.03 50.01 16 27 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 28 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 29 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 30 H 0.04 1.72 7.40 -2.39 -0.02 1.70 16 31 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.78 6.40 -2.39 -0.02 1.76 16 35 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.41 15.38 6.46 -92.71 -0.60 14.78 16 38 H 0.22 4.95 7.63 -2.91 -0.02 4.93 16 39 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.96 8.07 -2.38 -0.02 0.94 16 45 H 0.07 0.68 7.44 -2.39 -0.02 0.66 16 46 H 0.12 0.39 8.14 -2.39 -0.02 0.38 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.05 3.07 6.06 -2.39 -0.01 3.05 16 49 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 50 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -77.03 394.92 3.61 -73.42 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.34 Total: 24.01 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 6.40 Total: 18.59 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -5.09 Total: -138.95 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.07 Total: -27.08 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -77.03 3.61 -73.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071556907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.849 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds